New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978483	0 (0.000)	20 (0.360)	20/488	1.0	100%	intergenic (‑286/+35)	flhD/insB5	DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB
	?	NC_000913	= 2070271	NA (NA)					noncoding (1/1331 nt)	IS2	repeat region

CGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCAT  >  NC_000913/1978233‑1978720                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                              cGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACt                                                                                                                                                                                                                                               >  2:266744/1‑251 (MQ=255)       cACCGCACCCCGGGATGTCGCCGGGAAGCCCCGGTAAAAAAGAATTAGCATTAGAATAGTTGCGAGAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATGTTTCCTAAATCGACGCAACTGTACTCGTCACGACACTCACATACAACGGAGGGTGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagact                                                                                                                                                                                                                                         <  1:333345‑M1/251‑7 (MQ=255)                             gggAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCCCCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatctccagacaa                                                                                                                                                                                                                   <  1:448038‑M1/251‑29 (MQ=255)                                  gCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatctccagacaaccaat                                                                                                                                                                                                              <  1:179737‑M1/251‑34 (MQ=255)                                       ggTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatcaccagacaaccaatatcac                                                                                                                                                                                                         <  2:78492‑M1/251‑39 (MQ=255)                                                                 gTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatacta                                                                                                                                                                               <  1:484344‑M1/251‑65 (MQ=255)                                                                                    aGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattg                                                                                                                                                            >  1:283785‑M1/1‑168 (MQ=255)                                                                                        gAACGACCTTTTTTGGTGAATATGTCCTTACAAATAGAAATGGCTCTTTAAACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACCCAAAACACTtaggctggtccccagaatctccagacaaccaatataacttaaataagtgatagtcttaatccaagtttttcgactagtaattgg                                                                                                                                                           >  2:48567‑M1/1‑164 (MQ=255)                                                                                                      gTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatg                                                                                                                                          >  2:140681‑M1/1‑150 (MQ=255)                                                                                                          aaTATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGTGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatctccagacaaccaatatctcttaaataagtgatagtcttaatgctagtttttagactagtcattggagaacagatgattgatgtct                                                                                                                                       <  1:493003‑M1/250‑105 (MQ=255)                                                                                                                                   gTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgt                                                                                                             <  1:140681‑M1/251‑131 (MQ=255)                                                                                                                                    tCTTTACACTTATCTAAGCTTTTTCCTAACTCGACGCAACTGTACTCGTCACTACAAGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatatccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgt                                                                                                             >  1:433629‑M1/1‑120 (MQ=255)                                                                                                                                       ttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtacc                                                                                                          >  2:157703‑M1/1‑117 (MQ=255)                                                                                                                                                     gATTTTTCCTAAATCGACGCAACAGTACTCGGCACTACTCGCACATACAACGGAGGGGGTCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatctcctgacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggaaaacagatgattgatgtcttatggccggagaaacgcagacggcgtaccacacaggaaaagatc                                                                                           <  2:302706‑M1/251‑149 (MQ=255)                                                                                                                                                               aaaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttc                                                                                 >  2:411717‑M1/1‑93 (MQ=255)                                                                                                                                                                                                        ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcc                                        >  2:357976‑M1/1‑52 (MQ=255)                                                                                                                                                                                                          aGGGGGGCTGCGATTTTCAATAATGCGTGATGCCGATCACACAAAACACTtagactggccccctgcatctccagacaaccaatatcacttaaataagtgatagtcttaatactcgtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacg                                                                                                                       >  2:489905‑M1/1‑50 (MQ=255)                                                                                                                                                                                                          aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacg                                                                                                                       <  1:489905‑M1/170‑121 (MQ=255)                                                                                                                                                                                                                  tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatg                              >  2:455575‑M1/1‑42 (MQ=255)                                                                                                                                                                                                                                             aTCACACAAAACACTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccagttatttctct   <  2:262872‑M1/251‑237 (MQ=255)                                                                                                                                                                                                                                               cacacaAAACACTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcagtggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctctttgcccggcaacatggtgtagcagccagccagttatttctctg  <  1:203707‑M1/250‑238 (MQ=255)                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                              CGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCAT  >  NC_000913/1978233‑1978720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.