New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 566774	36 (0.880)	10 (0.250)	5/482	2.3	25.4%	pseudogene (91/93 nt)	renD	protein RenD
	?	NC_000913	568036 =	23 (0.570)					pseudogene (2/213 nt)	renD	protein RenD

ATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTATCAGCCGGGAAATAATGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGT  >  NC_000913/567789‑568261                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                  gcttgtccatatgactgcgagaattaaccgtggtgaggcgatccctgaaccagtaaaacaacttcctgtcatgggcggtagacctctaaatcgtgcacaggctctggcgaagatcgcagaaatcaaagctaagttcggactgaaaggagcaagtgtatgacgggcaaagaggcaattattcattacctggggacgcataatagcttctgtgcgccggacgttgccgcgctaacaggcgcaacagtaaCCAg                                                                                                                                                                                                                                <  2:388816‑M2/4‑1 (MQ=255) aTGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTATCAGCCGGGAAATAATGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACTTGGGTAGGATCAACCa                                                                                                                                                                                                                                 <  2:350795/250‑1 (MQ=14)                tgctgcTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTGTATCAGCCGGGAAATAAGGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGATCAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTg                                                                                                                                                                                                                  <  2:157625/250‑1 (MQ=255)                    agaattaaccgaggtgaggcgatccctgaaccagtaaaacaacttcctgtcatgggcggtagacctctaaatcgtgcaccggctctggcgaagatcgcagaaatcaaagctaagttcggactgaaaggagcaagtgtatgacgggcaaagaggcaattattcattacctggggacgcataatagcttctgtgcgccggacgttgccgcgctaacaggcgcaacagtaaCCAGCATAAATCAGGCCGCGGCt                                                                                                                                                                                                             >  2:44641‑M2/229‑251 (MQ=255)                       aCGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTAGCCATGGAGAACACTGTATCAGCCGGGAAATAATGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTaa                                                                                                                                                                                                           <  2:384246/250‑1 (MQ=255)                             cgtggtgaggcgatccctgacccagtaaaacaacttcctgtcatgggcggtagacctctaaatcgtgcacaggctctggcgaagatcgcagaaatcacagctaagttcggaatgaaaggcgcaagtgtatgacgggcaaagcggcaattattcattacctggggacgcataatagcttctgtgcgccggacgttgccgcgctaacaggcgcaacagtaaCCAGCATAAATCAGGCCGCGGCTAAAATGgc                                                                                                                                                                                                     >  2:255067‑M2/220‑250 (MQ=255)                                         atccctgcaccagtaaaacaacttactgtcatgggcggtagacctctaaatcgtgcacaggctattgcgaagatcgcagaaatcaaagctaagttcggactgaaaggagcaagtgtatgacgggcaaagaggcaattattcattacctggggacgcataatagcttctgtgcgccggacgttgccgcgctaacaggcgcaacagtaaCCAGCATAAATCAGGCCGCGGCTAAAATGGCACGGGAaggactt                                                                                                                                                                                        >  2:19888‑M2/208‑248 (MQ=255)                                              tgaaccagtcaaacaacttcctgtcatgggcggtagacctctaaatcgtgcacaggctctggcgaagatcgcagaaatcaaagctaagttcggactgaaaggagcaagtgtatgacgggcaaagaggcaattattcattacctggggacgcataatagcttctgtgcgccggacgttgccgcgctaacaggcgcaacagtaaCCAGCATAAATCAGGCCGCGGCTAAAATGGCACGGGCAGGACTTCTGGt                                                                                                                                                                                   >  2:149279‑M2/203‑251 (MQ=255)                                                      ttCGCTGAAAGTGGCATGAATACATGGAGAACACTTTATCAGCCGGGAACTAATGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATAGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAAACTCGCTTAGGCCTGTGTCCATATTACGTGGGTCGGATCAACCAGCATAAATCAGGCTGGGGCTACAATGGGCCGGGGAGGAATCATGGTCGTTGATg                                                                                                                                                                           >  2:80118/1‑251 (MQ=14)                                                        aaacaacttcctgtcatgggcggtagacctctaaatcgtgcacaggctctggcgaagatcgcagaaatcaaagctaagttcggactgaaaggagcaagtgtatgacgggcaaagaggcaattattcattacctggggacgcataatagcttctgtgcgccggacgttgccgcgctaacaggcgcaacagtaaCCAGCATAAATCAGGCCGCggctaaaatggcacgggcaggtcttctggttatcgaaggt                                                                                                                                                                         <  1:239501‑M2/59‑20 (MQ=255)                                                        aaacaacttcctgtcatgggcggtagacctctaaatcgtgcacaggctctggcgaagatcgcagaaatcaaagctaagctcggactgaaaggagcaagtgtatgacgggcaaagaggcaattattcattacctggggacgcataatagcttctgtgcgccggacgttgccgcgctaacaggcgcaacagtaaCCAGCATAAATCAGGCCGCggctaaaatggcacgggcaggtcttctggttatcgaaggt                                                                                                                                                                         <  1:88729‑M2/59‑20 (MQ=255)                                                           tGAAAGTGGAATGTATCCATGGAGAACACTTTATCAGCCGGGAAATAATGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTa                                                                                                                                                                        >  1:348683/1‑249 (MQ=255)                                                               aggggaagttATCCATGGAGAACACTTTATCAGCCGGGAAATAATGCGGGCAACGGTGTTTAATTATAGCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGGGTGGCGGCCTCAGGCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCt                                                                                                                                                                  <  2:335109/242‑1 (MQ=255)                                                                               ggAGAACACTTTATCAGCCGGGAAATAATGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCAGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTTTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTa                                                                                                                                                  <  1:239590/251‑1 (MQ=255)                                                                                 agaACACTTTATCAGCCGGGAAATAATGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTAAGTCCGGAACACTTTGCAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACAAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTAcc                                                                                                                                                >  1:366723/1‑251 (MQ=255)                                                                                        aaatcgtgcacaggctctggcgaagatcgcagaaatcaaagctaagttcggactgaaaggagcaagtgtatgacgggcaaagaggcaattattcattacctggggacgcataatagcttctgtgcgccggacgttgccgcgctaacaggcgcaacagtaaCCAGCATAAATCAGGCCGCGGCTAAAATGGCACGGGCAGGTCTTCTGGTTATCGAAGGTAAGGTCTGGCGAACGGTGTATTACCGgttt                                                                                                                                           <  1:121014‑M2/89‑2 (MQ=255)                                                                                                   aggctctggcgaagatcgcagaaatcaaagctaagttcggactgaaaggagcaagtgtatgacgggcaaagaggcaattattcattacctggggacgcataatagcttctgtgcgccggacgttgccgcgctaacaggcgcaacagtaaCCAGCATAAATCAGGCCGCGGCTAAAATGGCACGGGCAGGTCTTCTGGTTATCGAAGGTAAGGTCTGGCGAACGGTGTATTACCGGTTTGCTACCAGggaag                                                                                                                              <  1:394999‑M2/102‑1 (MQ=255)                                                                                                    gAAATAATGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAAACGGTGGCGGCGGCACAGTTGACGCCGAGGCCCCAGGACGGAACAATTTGAAAACAAGAAACTAGCTCAGGCCTGAGTCCATACTACGTGGGTAGGATCAACCAGCATCAATCAGGCCGCCACTAAAATGGCGCGGGCAGGAACCCTGGGCGTAGCTGGTAAGGACTCGCGAACGGTGTATTACCGGTTCGCTACCagaggagg                                                                                                                             >  1:269734/1‑247 (MQ=12)                                                                                                          atGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTATATTACCGGTTCGCTACCAGAGAAGAATGgga                                                                                                                       <  1:254418/251‑1 (MQ=255)                                                                                                          atGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGACTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCCTATTAAGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGGTGATGGTAAAGGCTGGCGGACGGGATATTACCGGTTGTCTACCAGAGAAGAATggg                                                                                                                        >  2:254418/1‑250 (MQ=18)                                                                                                                             aaagctaagttcggactgaaaggagcaagtgtatgacgggcaaagaggcaattattcattacctggggacgcataatagcttctgtgcgccggacgttgccgcgctaacaggcgcaacagtaaCCAGCATAAATCAGGCCGCGGCTAAAATGGCACGGGCAGGTCTTCTGGTTATCGAAGGTAAGGTCTGGCGAACGGTGTATTACCGGTTTGCTACCAGGGAAGAACGGGAAGGAAAGATGAGCACgaac                                                                                                    >  2:12012‑M2/124‑250 (MQ=255)                                                                                                                              ttATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTTCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGGCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGGGTATTACCGGTTCGCTACCAGAGAAGGATGGGGAGGAAAGGTGAGCACGAATc                                                                                                   >  2:107323/1‑251 (MQ=255)                                                                                                                                  atCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAACGGGAAGGAAAGGTGAGCACGAATCTGAt                                                                                               <  2:78150/251‑1 (MQ=255)                                                                                                                                         gtgATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAAACAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGGGGGTGATGGGAAGGGCTGGGGAACGGTGTATTACCGGTTCGATACCCGAGAAGAATGGGAAGGACAGGGGAGCACGAATCTGATTTTTa                                                                                          >  2:185595/1‑249 (MQ=21)                                                                                                                                           gATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGa                                                                                      <  1:410073/251‑1 (MQ=255)                                                                                                                                                           ggcggcACAGTTGGTGTGGCCGCGTCAGGCCCGAACCATTTGAAAACCAGACGCTCGATTCGGCCTGTGTCCATATTACGTGGGAAGGGTCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGAAGGCATCCTGGTCGTTGATGGGAAGGTCTGGCGCACGGGGTATTACCGGTTCGCTCCCAACGAAGAATGGGAAGGCAAGGTGAGCAAGAATCTGATTTTTAAGGAGGGTCGCCAGGGTgac                                                                      >  2:25596/1‑249 (MQ=255)                                                                                                                                                                          gtgGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTTCCGCGATGAAACGGGt                                                        <  1:318659/250‑1 (MQ=255)                                                                                                                                                                                gcCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAgg                                                 <  1:282632/251‑1 (MQ=255)                                                                                                                                                                                 ccTCAGGCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAggg                                                <  1:141585/251‑1 (MQ=255)                                                                                                                                                                                          ggAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCATGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGTGGATATaaaa                                       <  1:321270/251‑1 (MQ=255)                                                                                                                                                                                          ggAACAATTTGAAAACAAGAACCGCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATaaaa                                       <  2:92189/251‑1 (MQ=255)                                                                                                                                                                                           gAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAg                                      <  1:213275/251‑1 (MQ=255)                                                                                                                                                                                                                               gtCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGtgagt  >  1:83768/1‑251 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                  ATGAGCGCAAAAGGTTGCTGCTACGATAATGCCTGCGTGGAAAGCTTCTTTCATTCGCTGAAAGTGGAATGTATCCATGGAGAACACTTTATCAGCCGGGAAATAATGCGGGCAACGGTGTTTAATTATATCGAATGTGATTACAATCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAACCAGCATAAATCAGGCTGCGGCTAAAATGGCGCGGGCAGGAATCCTGGTCGTTGATGGTAAGGTCTGGCGAACGGTGTATTACCGGTTCGCTACCAGAGAAGAATGGGAAGGAAAGGTGAGCACGAATCTGATTTTTAAGGAGTGTCGCCAGAGTGCCGCGATGAAACGGGTATTGAGGGTATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGT  >  NC_000913/567789‑568261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.