New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1650702	0 (0.000)	21 (0.520)	18/484	0.8	100%	intergenic (+717/+2026)	ydfD/ynfP	lysis protein/protein YnfP
	?	NC_000913	1670814 =	0 (0.000)					coding (1116/1254 nt)	ynfM	putative transporter YnfM

ATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATACACGTCTGTTGTTGATCTCGCCCGCGCCAGAGCCAATCAACAGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAG  >  NC_000913/1650456‑1650943                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                  aTCAACGTTGATATGGTTATTAGCGCACAGGCATTGTTGCAGGACGACATGGCAACATTCGACGGACATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCACGGAAACCGGAAAATgggg                                                                                                                                                                                                                                               >  1:99041‑M1/1‑247 (MQ=255)                   attaGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggac                                                                                                                                                                                                                              <  1:137414‑M1/250‑22 (MQ=255)                                                                ggACATATCGTTGAAGCGATGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGACCGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggc                                                                                                                                                                                >  1:98809‑M1/1‑184 (MQ=255)                                                                   cATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgc                                                                                                                                                                              >  1:421677‑M1/1‑181 (MQ=255)                                                                         gTTGAAGCGTTGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttatt                                                                                                                                                                       <  1:392556‑M1/251‑77 (MQ=255)                                                                         gTTGAAGCGTTGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCAGCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttatt                                                                                                                                                                       <  1:421765‑M1/251‑77 (MQ=255)                                                                                                                        gCTTAAGTTGCACGCCAGTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtctagtattgccgggacgctgggtggtgttttcttgcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcg                                                                                                                        <  1:219483‑M1/251‑124 (MQ=255)                                                                                                                                                                              aTGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggact                                                                  <  2:105887‑M1/251‑178 (MQ=255)                                                                                                                                                                                ggCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggactt                                                                 >  1:295169‑M1/1‑72 (MQ=255)                                                                                                                                                                                ggCCCGAAATTCAGGAAGAGATGCGCATCTGGAAAAAAAGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggaggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgctgctggtcattgctctgatggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaataccagaccggactt                                                                 >  2:281793‑M1/1‑72 (MQ=255)                                                                                                                                                                                           cAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggacttattgccagctc                                                      <  1:164979‑M1/250‑190 (MQ=255)                                                                                                                                                                                                          aTCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtacatacccgtccggacttattgccagctcacaccaacgttaat                                        >  1:207947‑M1/1‑46 (MQ=255)                                                                                                                                                                                                               gAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGACAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggacttattgcaagctcaaaccaacgttaatagccatc                                 >  2:98265‑M1/1‑41 (MQ=255)                                                                                                                                                                                                                  aaaaCGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctgttcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggacttattgccagctcaaaccaacgttaatagccatccta                              <  1:168522‑M1/251‑214 (MQ=255)                                                                                                                                                                                                                          gcgAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggacttattgccagctcaaaccaacgttaatagccatcctaaaatagac                      <  2:52345‑M1/251‑222 (MQ=255)                                                                                                                                                                                                                            gAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcggttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggacttattgccagctcaaaccaacgttaatagccatcctaaaatagacg                     >  1:18504‑M1/1‑28 (MQ=255)                                                                                                                                                                                                                             aaGGTGAACGCAAGGACACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggacttattgccagctca                                                     >  1:141732‑M1/1‑27 (MQ=255)                                                                                                                                                                                                                             aaGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggacgtattgccagctca                                                     <  2:141732‑M1/217‑191 (MQ=255)                                                                                                                                                                                                                                     cGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggacttattgccagctcaaaccaacgttaatagccatcctaaaatagacgaatcgccagc           <  1:160660‑M1/251‑233 (MQ=255)                                                                                                                                                                                                                                     cGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggacttattgccagctcaaaccaacgttaatagccatcctaaaatagacgaagcgccagc           <  2:17765‑M1/251‑233 (MQ=255)                                                                                                                                                                                                                                              aCCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggacttattgccagctcaaaccaacgttaatagccatcctaaaatagacgaagcgccagccaattcccg  <  1:37574‑M1/251‑242 (MQ=255)                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                  ATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATACACGTCTGTTGTTGATCTCGCCCGCGCCAGAGCCAATCAACAGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAG  >  NC_000913/1650456‑1650943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.