New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3652036 =	NA (NA)	30 (0.860)	28/486	0.3	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	3938725 =	0 (0.000)					coding (499/993 nt)	rbsR	DNA‑binding transcriptional dual regulator RbsR

TTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCATGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAACTCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCTATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAGGCCGTCTTTACCGGAAATGAC  >  NC_000913/3938482‑3938967                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                   gttgctgaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcacattccTTAGCAAc                                                                                                                                                                                                                                             >  1:229364‑M2/244‑251 (MQ=255)   tgctgaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattaaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGc                                                                                                                                                                                                                                           >  1:226095‑M2/242‑251 (MQ=255)     ctgaaaaacggtaaccaactggcgatgttcttcacgctggccaacctgtctcgggcggaccatatgatacgtccgtgggagagatctcactaaagactggggataacgccttaaatggcgaagaaacggtctaaataggctgttacaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagcttttctgcgctaattagcaccttcattagtatcgca                                                                                                                                                                                                                                          >  2:262181‑M2/240‑243 (MQ=255)        aaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaatgcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgctttttcgcaccttccTTAGCAACGCAatat                                                                                                                                                                                                                                      <  1:265800‑M2/15‑1 (MQ=255)               ataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCg                                                                                                                                                                                                                               >  2:94639‑M2/230‑251 (MQ=255)                    caactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaataggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATaa                                                                                                                                                                                                                           >  1:46429‑M2/225‑250 (MQ=255)                       ctggcgatgttattaacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgatatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAgg                                                                                                                                                                                                                        >  2:155101‑M2/222‑250 (MQ=255)                            gatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATAc                                                                                                                                                                                                                  <  1:94639‑M2/35‑1 (MQ=255)                                                acctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCg                                                                                                                                                                                              <  1:183588‑M2/55‑1 (MQ=255)                                                     tttagggcggaccaaatgatacggcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGccc                                                                                                                                                                                          <  2:192554‑M2/59‑1 (MQ=255)                                                        cgggcggacaaaatgatacgtcagtgggagagatctcactaaaaacgggggataacgccttaaatggctaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaagcggctcaaacatgaagaaatgaaatgacttagtccgccgagaagaagttccccgcttatgctcaccttccTTAGCAACGCAATATCTGATCGATAAAGTTCATACCCTTATCGCCTGTATTTCCGGCCCGCt                                                                                                                                                                                       <  2:249066‑M2/62‑1 (MQ=255)                                                         gggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTgg                                                                                                                                                                                     <  1:182856‑M2/64‑1 (MQ=255)                                                             ggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATaa                                                                                                                                                                                 <  1:77653‑M2/68‑1 (MQ=255)                                                             ggaccaaatgatacgtcagtgagaaagatctcactaaaaactgggggcaccgccttaaatggcgaagaagaggaataactaggctgattccagacatttacgggagaaagaatcggctaaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgattattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACAGGACCGCTGGATa                                                                                                                                                                                  >  2:154283‑M2/184‑250 (MQ=255)                                                                 caaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACt                                                                                                                                                                             >  1:325619‑M2/180‑251 (MQ=255)                                                                      gatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatggctgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGgc                                                                                                                                                                        <  1:340282‑M2/77‑1 (MQ=255)                                                                                    agagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTgg                                                                                                                                                          >  1:244369‑M2/161‑251 (MQ=255)                                                                                                aaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCggg                                                                                                                                              >  1:301012‑M2/149‑251 (MQ=255)                                                                                                aaaaaatggggataaggccttaaatggcgaagaaacggtctaaatagactgattcaaggcatttaagggcgaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgccccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGATATCggg                                                                                                                                              >  2:144025‑M2/149‑251 (MQ=255)                                                                                                  aaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGggcg                                                                                                                                            >  2:43096‑M2/147‑251 (MQ=255)                                                                                                                       atggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGtctc                                                                                                                       <  1:32702‑M2/126‑1 (MQ=255)                                                                                                                                                ctgattcacggcattcacgggcgaaaaaatcggctccaacatgcagaactgaactgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCTATGAAGTc                                                                                               >  2:176346‑M2/101‑250 (MQ=255)                                                                                                                                                      caaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCTATGTAGCCACTGGTg                                                                                        >  2:242473‑M2/95‑251 (MQ=255)                                                                                                                                                          gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCTATGAAGTCACTGGTGAttt                                                                                    <  1:273004‑M2/161‑1 (MQ=255)                                                                                                                                                               tacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCTATGAAGTCACTGGTGATTTTGaa                                                                                <  1:76570‑M2/165‑1 (MQ=255)                                                                                                                                                                acgggtgaacaaatcggctcaaacaggaagaaaggaaatgactgagtcaggcgagaagaatttccccgctttgtcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTAATACCCGTATCGGCTGTAGTACCGGCCCGCTGGATTAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGACACGTGCGGGTCTCATCATTCCTGATGGCTATGAATTCACGGTTGATTttgactt                                                                              <  2:267571‑M2/167‑4 (MQ=255)                                                                                                                                                                  gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCTATGAAGTCACTGGTGATTTTGAAttt                                                                             >  1:158584‑M2/83‑250 (MQ=255)                                                                                                                                                                                     aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCTATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTAt                                                         <  2:158584‑M2/188‑1 (MQ=255)                                                                                                                                                                                                              tcagccgagaataatttccccgcttattcgcaccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCTGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCTATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTGTGACGCTATGCGCCAACTGCTATCACAGCCGCt                                 <  1:102934‑M2/212‑1 (MQ=255)                                                                                                                                                                                                                                            caccttccTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCTATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAGGCCGTCTTTACCGGAAATGAc  <  1:43096‑M2/243‑1 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                   TTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCATGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAACTCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCTATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAGGCCGTCTTTACCGGAAATGAC  >  NC_000913/3938482‑3938967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.