New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1397238	NA (NA)	20 (0.570)	18/488	0.7	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	1414442 =	0 (0.000)					coding (352/810 nt)	recT	recombinase RecT

CCAGCTCAATCTGTTTGCGCGTCATAACTTCAAACTGAGTACCTCCGTCTTTCAGTCTTGCGACAGCATAGACGTGGGTAACCGGGGCATCTTCGTTTTCTCCCGGGCGGTGTATTAACTTTTCATCAAGGCCAAATTCGAAGCTAAACTCGTCACCTTCACGGACAACACGGGCTGACAGGCTGGCGATTTGACCAGAACGGCGAGCCAGATCAATCATGCCGCGATAGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCTGCTGCCAGTTGCTCTTTCATTGAT  >  NC_000913/1414205‑1414686                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                     gaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacggcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcgccttccTGATCTGAACGTTc                                                                                                                                                                                                                                         <  1:110882‑M2/14‑1 (MQ=255)                   ggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatcgcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCg                                                                                                                                                                                                                       <  2:15150‑M2/32‑1 (MQ=255)                           tattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTttat                                                                                                                                                                                                                <  1:23032‑M2/39‑1 (MQ=255)                                acgctggtcatcctgtttcgggcggaccaaatgattcgtcagtgggagagagctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaatcggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgtgtcagccgagaagaatttccccgtttattcggaccttccTTAGCTGAACGTTCTTTTTACCGCTTTTTTCGTTTTTATTACCaa                                                                                                                                                                                                          <  2:33536‑M2/45‑1 (MQ=255)                                                                   acgtcagtgggagagatctcactaaaaactgggtataacgccttaaatggcgaagaaacggtctaaataggctgattcaatgcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaataatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGACGGCGCTACCt                                                                                                                                                                       <  2:262966‑M2/80‑1 (MQ=255)                                                                    cgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTg                                                                                                                                                                      >  1:106001‑M2/171‑251 (MQ=255)                                                                               gagatctcactaaaaactggtgataacgccttaaagggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaatcatgaagaaatgaaatgactgagtcagccgagaagaattgccccgcttattcgcaccttccTTAGCTGAACGTGCTTTTTACCGCACCTTTCGGTGTTATTACCTAAAGACAGTAGAGATGCATGACCGAGGTCCCTCCCTGGCTCATGTCCg                                                                                                                                                           <  2:182069‑M2/92‑1 (MQ=255)                                                                                       actaaaaactgggttcaacgccttaaatggcgaagaaacggtctaaataggctgattaaaggcctttacgggagaaaaaatcggctaaaacatgacgaaatgaaatgcctgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCCCACGCCCGAGCtgtg                                                                                                                                                    >  2:52488‑M2/152‑250 (MQ=255)                                                                                              actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaagatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGATCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTCAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGAGAACACTGt                                                                                                                                            >  1:300878‑M2/145‑251 (MQ=255)                                                                                                 ggggataacgccttaaagggcgaagaaacggtcgaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTGTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTTCGAGCTGTGAACActgtccg                                                                                                                                         <  2:131714‑M2/110‑4 (MQ=255)                                                                                                                   ggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACt                                                                                                                        <  2:263145‑M2/127‑1 (MQ=255)                                                                                                                    gcgaagaaacggtctaaatagtcttattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgcctgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCa                                                                                                                      <  1:238230‑M2/129‑1 (MQ=255)                                                                                                                                            gattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGc                                                                                                <  2:136033‑M2/151‑1 (MQ=255)                                                                                                                                              ttcaaggcctttacgggagaaaaaatcggctaaaacatgcagcaatgaaatgactgagtcagccgagaagaatttcccagcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTAc                                                                                                                                          >  2:35464‑M2/97‑205 (MQ=255)                                                                                                                                              ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTAc                                                                                                                                          <  1:35464‑M2/109‑1 (MQ=255)                                                                                                                                                                    aaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCg                                                                                                                                                                                                                       <  1:95157‑M2/32‑1 (MQ=255)                                                                                                                                                                    aaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCg                                                                                                                                                                                                                       >  2:95157‑M2/75‑106 (MQ=255)                                                                                                                                                                         ggctcaaacatgaagaaatgaaatgacggagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCTGATCTTTACGAATTTCTGTGGTGGCGATa                                                                 <  2:229408‑M2/182‑1 (MQ=255)                                                                                                                                                                                                 gactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCat                                          <  2:106001‑M2/205‑1 (MQ=255)                                                                                                                                                                                                                                        ccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCTGCTGCCAGTTGCTCTTTCATTGAt  <  1:155426‑M2/245‑1 (MQ=255)                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                     CCAGCTCAATCTGTTTGCGCGTCATAACTTCAAACTGAGTACCTCCGTCTTTCAGTCTTGCGACAGCATAGACGTGGGTAACCGGGGCATCTTCGTTTTCTCCCGGGCGGTGTATTAACTTTTCATCAAGGCCAAATTCGAAGCTAAACTCGTCACCTTCACGGACAACACGGGCTGACAGGCTGGCGATTTGACCAGAACGGCGAGCCAGATCAATCATGCCGCGATAGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCTGCTGCCAGTTGCTCTTTCATTGAT  >  NC_000913/1414205‑1414686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.