| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,630,295 | C→T | Q76Q (CAG→CAA) | ettA ← | energy‑dependent translational throttle protein EttA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,630,295 | 0 | C | T | 90.9% | 91.2 / NA | 33 | Q76Q (CAG→CAA) | ettA | energy‑dependent translational throttle protein EttA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (16/14); minor base G (0/3); total (16/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACGTTCAGATTATGACCGTCGTGAGCCTGAATGATCTCTTCCAGACGGCCTTGTTCAGCGGCCAGCTTGTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCCTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCG > NC_000913/4630054‑4630533 | ccaaggccGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACGTTCAGATTATGACCGTCGTGAGCCTTAAGGATCTCTTCCAGCCGGCCTTTTTCAGCGGCCAGCTTGTCAAAATCGGCATCCGGATCGGCGTCCAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCGCGGTGTGTTCCGGGTGCAGCTTCTGTTCTTGCGGCAg < 2:69677/244‑1 (MQ=255) cAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACGTTCAGATTATGACCGTCGTGAGCCTGAATGATCTCTTCCAGACGGCCTTGTTCAGCGGCCAGCTTGTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCt < 1:201855/251‑1 (MQ=255) aTCCGCCGCACGCTCCAGCTGTACGTTCAGATTATGACCGTCGTGAGCCTGAATGATCTCTTCCAGACGGCCTTGTTCAGCGGCCAGCTTGTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCt > 1:104782/1‑251 (MQ=255) aTCCGCCGCACGCTCCAGCTGTACGTTCAGATTATGACCGTCGTGAGCCTGAATGATCTCTTCCAGACGGCCTTGTTCAGCGGCCAGCTTGTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCt > 1:144223/1‑251 (MQ=255) ccAGCTGTACGTTCAGATTATGACCGTCGTGAGCCTGAATGATCTCTTCCAGACGGCCTTGTTCAGCGGCCAGCTTGTCAAAATCGGCCTCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTc > 2:164966/1‑250 (MQ=255) catcTGTACTTTCAGATTATGACCGTCGTGAGCCTGAATGATCTCTTCCGGTCGGCCTTGTTCAGCGGCCAGCTTGTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCAc < 1:18568/248‑1 (MQ=255) cAGCTGTACGTTCAGATTATGACCGTCGTGAGCCTGAATGATCTCTTCCAGACGGCCTTGTTCAGCGGCCAGCTTGTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTTCGGCAGATCACCAATCTTGATGTCTTGCTGCGGCCGCGCTTCAc > 2:83341/1‑251 (MQ=255) gACCGTCGTGAGCCTGAATGATCTCTTCCAGACGGCCTTGTTCAGCGGCCAGCTTGTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAAt < 1:304967/250‑1 (MQ=255) ctctTCCAGACGGCCTTGTTCAGCGGCCAGCTTGTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAggg > 1:112295/1‑251 (MQ=255) cAGACGCCCTTGTTCGGCGGCCGTATTGTCAAAACCGGCCTCCGGATCGGCTTACAGCGCATACCCTTCATCCAGGCTTTTCAGTGCGTGACCCTCTCCTGAAACCGCTTCTTCAATGGACCCACGCACGTTGTGTTCCGGGTGCAGCTGCGGTTCTCGCGGCAAATAACCAATTTGGATGTCTGGCTGCGGACGCGTTTCCCC‑T‑CCGTTGTTTTTATCAAGGCCCGCCATAATGCGCAGCAGGGTGGACt < 2:261937/251‑1 (MQ=255) ttGTCAAAATCGGAATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGCCGCGCTTCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGac > 2:176495/1‑251 (MQ=255) gTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGacac > 1:82578/1‑251 (MQ=255) ccGGATCGGCGTACAGCGCATACACCTCACCCGGGCTTTTCGGGGCGTTAACCACTTCTAAAACCGTTTCTTCAATGGACTCCCGCACGGTGTGTTCCGGGTTCAGCGGCGTTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGCCGCGCTTCCCC‑T‑TCGATGTTTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGccc < 1:164966/249‑1 (MQ=255) ggATCGGCGTACAGCACATACTCTTCACCCAGGCTTTTCAGGGCTTTAACCTCTTCTGAATCCGTTTCTTAAAGGGCCTCACGACCGGTGTGTTCCGGGTGCGGCTGGGGTTTTGGCGGCAGATACCCAATTTTTATGTCTGGCGGCGGACGCGCTTCACC‑T‑GCGATGTCTTTAACAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAgg < 1:28166/251‑1 (MQ=255) gATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAggg > 1:174753/1‑251 (MQ=255) tCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACAACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGga > 1:194162/1‑250 (MQ=255) gggtaaagcgaatccctttcagaaaGGCGTTCCAGGGCGTTAAACACTTCTGAAACCGCTTTTTAAAGGGCCTCAGGCAGGGGGTGTTCCGGGTTCGGGGGGGGTTCGTGGGGCAGATACCAAATTTTGATGTCGGGCTGGGGACGCGCT‑CACCCT‑TCGATGTCTTTATCAAGGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATGTTTGCCCCAGGgaagaa < 1:83341/227‑1 (MQ=255) aaaccgcctccccTTCACCCAGGCGTTTCAGGGCGTTAACCCCTTCTGAACCCGCTTCTTCAATGGACCCCCGCACGGTGTGTTCCGGGTTCAGCGGGGGTTCTTGCGGCAGATAACCAATCTTGATGTCGGGCTGCGGACGCGCT‑CCCC‑TGTGGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACt < 2:304359/238‑1 (MQ=255) catcctatcgccTTCATCCAGGAGTTTCAGGTCGTTAACCTCTCCTAAAACCGCTTCGTCAACTGCCTCACGCACGGTTTGTTCCGGGTTCAGCTGCGTGTCGTGCGGCAAATACCGAATCTTGATTTCTGCCTGCGGACGCGCTTCCCC‑T‑GCGAGGCCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCa < 1:14839/240‑1 (MQ=255) acTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAATg < 1:13471/159‑1 (MQ=255) acTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAATg > 2:13471/1‑159 (MQ=255) aGGCTTTTCAGGGCTTTAACCACTTCGGAACCCGCTTCTTCAATGGACCCCCGCTCGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGAAGATAACCAATCTTGATGTCTGGCTGCGGCCGCGCTCCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAat < 1:226687/251‑1 (MQ=255) aGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAat > 1:100918/1‑251 (MQ=255) ccccactttggaacccGCTTTTTCAATGGACTCACGCAAGGTGTGTTCCGGGTGCGGCCGCGGTTCTTCGGGCAGATAACCATTCTTGTTGTCTGGCTGCGGCCGCGTTTCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGaa < 1:166083/237‑1 (MQ=255) tttcgaaacccctcttttaaaTGGACTCACGCAGGGTGTGTCCCGGGTACAGCGGCGTTTCTGGCGGCAAATAACCAAGTTTGATGTCTGGCTGCGGGCGCGTTTCCCC‑T‑TCGATGTCTTTATAAAGGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGaacaac < 2:264282/231‑1 (MQ=255) cTTCTGAAACCGGTTCTTCAATGGCCGCACCCACGGTGTGTTCCGGTTTCGGCTGCGGTTCGGGCGGCAGATAACCAATCTTGATGTCTGGCGGCGGACGGGCTTCACC‑T‑CTGATGTCGTTCTCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGaacaa < 1:138546/249‑1 (MQ=255) aaCCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCg > 1:95869/1‑250 (MQ=255) cGCTTATTCAATGGACCCACGCACGGTGTGTTCAGGGTTCCGCTGAGGTTCTTTCGGCAGATAACCAATCTTGCTGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATCATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGCCACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAACTATGACGTTTCGGCGGAACAACTTTACCGacac > 2:144847/1‑251 (MQ=255) tGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGt > 1:220564/1‑250 (MQ=255) ggACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGCACAACTTTGCCGACACGATGCATGGtat > 2:215919/1‑251 (MQ=255) ggACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCTTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGtat > 2:150205/1‑251 (MQ=255) tCCGGGTTCCGCTGCGGTTCTTGCGGCAGATAACCAATCTTGTTGTCTGGCTGCGGACGCGCTTCCCC‑T‑TCGATTTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGt < 1:237384/250‑1 (MQ=255) caggtGCGGTTCTTGGGGAAGATACCCAATCTTGTTGTCTGGCTGCGGGCGCGCTTCCCT‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGATTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCg < 1:178944/247‑1 (MQ=255) | CCCAGTCCGGCAGACGTAGCGCATCCGCCGCACGCTCCAGCTGTACGTTCAGATTATGACCGTCGTGAGCCTGAATGATCTCTTCCAGACGGCCTTGTTCAGCGGCCAGCTTGTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCCTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACC‑T‑TCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCG > NC_000913/4630054‑4630533 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |