New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1397238	NA (NA)	23 (0.760)	20/490	0.5	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	1414442 =	0 (0.000)					coding (352/810 nt)	recT	recombinase RecT

GTTTGCGCGTCATAACTTCAAACTGAGTACCTCCGTCTTTCAGTCTTGCGACAGCATAGACGTGGGTAACCGGGGCATCTTCGTTTTCTCCCGGGCGGTGTATTAACTTTTCATCAAGGCCAAATTCGAAGCTAAACTCGTCACCTTCACGGACAACACGGGCTGACAGGCTGGCGATTTGACCAGAACGGCGAGCCAGATCAATCATGCCGCGATAGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCTGCTGCCAGTTGCTCTTTCATTGATGG  >  NC_000913/1414217‑1414688                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                       ccaactggcgatgttattcacgctggccaacctgtttcgggcggcccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccacgcttattcgaaccttccTTAGCTGAACGTTCTTTTTACCGctc                                                                                                                                                                                                                               >  2:140850‑M2/226‑251 (MQ=255)          gatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGttt                                                                                                                                                                                                                      <  1:89784‑M2/35‑1 (MQ=255)                                      cgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCAt                                                                                                                                                                                          >  1:163554‑M2/189‑251 (MQ=255)                                                 aatgatacgtcagtgggagagctctcactacaaactggggataaagccttacatggcgacgaaacggcctaaatagcctgcttcaaggcctatacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttacccgcttattcgcaacttccTTAGCTGAACGTTCTTTTTACCCCTCTTTTCGTTTTTATTACCAAAAGGCAGTACATATGCCTGACCGAGGgcg                                                                                                                                                                               >  1:23553‑M2/178‑251 (MQ=255)                                                  atgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagactttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGgcgc                                                                                                                                                                              >  2:113333‑M2/177‑251 (MQ=255)                                                                 gagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaacgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTc                                                                                                                                                               >  2:55086‑M2/162‑251 (MQ=255)                                                                       tctcactaaaaactggagataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccacgcttattcgaaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCATAAGGCAGTACATATGCATGACCGAGGGCGCTACTTGGTTCAATTCCGAGCt                                                                                                                                                         >  2:189989‑M2/156‑251 (MQ=255)                                                                                    tggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagacgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTAc                                                                                                                                            >  2:22118‑M2/143‑251 (MQ=255)                                                                                                    tatggcgtataagcggtctaaataggctgattcaaggcatttacgggggaaaaaatcggatcaaaaatgcagaaatgaaatgacagagtcagcagagaagaatttccacgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACAGTGGGCGCTACCTGACTAAAGTCCGAGCTGTGAACACGGTACGCGCGCAATGACaaa                                                                                                                             >  2:1669‑M2/127‑250 (MQ=255)                                                                                                    aatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACaaaa                                                                                                                            <  1:2321‑M2/125‑1 (MQ=255)                                                                                                     attgcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAAc                                                                                                                           <  1:136668‑M2/126‑1 (MQ=255)                                                                                                                                                                      atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTcc                                                                                                                                                              >  2:89675‑M2/61‑151 (MQ=255)                                                                                                                                                                      atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTcc                                                                                                                                                              <  1:89675‑M2/91‑1 (MQ=255)                                                                                                                                                                                   atgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCa                                             <  1:55086‑M2/204‑1 (MQ=255)                                                                                                                                                                                      actgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCatat                                          <  1:220674‑M2/207‑1 (MQ=255)                                                                                                                                                                                              cgccgagaagaatttccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGCGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTgg                                   >  2:25927‑M2/37‑250 (MQ=255)                                                                                                                                                                                                             ccccgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCTGCTGCCAGt                   <  1:113333‑M2/230‑1 (MQ=255)                                                                                                                                                                                                                cgcttattcgcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCTGCTGCCAGTTGc                <  1:5315‑M2/233‑1 (MQ=255)                                                                                                                                                                                                                         gcaccttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCGGCTGCCAGTTGCGCGTTCAtt       <  2:145402‑M2/242‑1 (MQ=255)                                                                                                                                                                                                                          caccttccTTAGCTGAACGTTCTTTTTACCGATCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCTGCTGCCAGTTGCTCTTTCTTTg      >  2:259552‑M2/9‑251 (MQ=255)                                                                                                                                                                                                                          caccttccTTAGCTGAACGTTCTTTTTACAGCTCTTTTCGTTTCTATCACCAAATGGCAGTAAATATGCCTGACCGAGGGCGCTACATGCATCAAATCCGAGCTGTGCACACTATACGATCAAACTGACAAAACTCATAGCGCCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGACGTCATATGGCGTGGAAGCGCTGCTGCCAGTTGCTCTTTCATTg      >  1:133128‑M2/9‑251 (MQ=255)                                                                                                                                                                                                                             cttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCCAAAGGCAGTAAATATGCATGCCCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCTGCTGCCAGTTGCTCTTTCATTGATg   >  2:289042‑M2/6‑251 (MQ=255)                                                                                                                                                                                                                              ttccTTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAAGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCTGCTGCCAGTTGCTCTTTCATTGATgg  >  1:155093‑M2/5‑251 (MQ=255)                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                       GTTTGCGCGTCATAACTTCAAACTGAGTACCTCCGTCTTTCAGTCTTGCGACAGCATAGACGTGGGTAACCGGGGCATCTTCGTTTTCTCCCGGGCGGTGTATTAACTTTTCATCAAGGCCAAATTCGAAGCTAAACTCGTCACCTTCACGGACAACACGGGCTGACAGGCTGGCGATTTGACCAGAACGGCGAGCCAGATCAATCATGCCGCGATAGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGTAAATATGCATGACCGAGGGCGCTACCTGGCTCAAGTCCGAGCTGTGAACACTGTACGATCGCACTGACAAAACTCATAGTGTCACAGTTTCCTAACGCCGGAACTTTACGAATTTCTGTGGTGGCGATACGGATCATACGTTCAGCCGTCATATGGCGTGGAAGAGCTGCTGCCAGTTGCTCTTTCATTGATGG  >  NC_000913/1414217‑1414688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.