New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 130381012 (0.400)16 (0.530) 15/490 0.8 57.1% coding (912/921 nt) oppB murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

TCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCCGTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGTCGACGTTTTATGCATAACCGTGCGGCGGTTGCCAGTCTGATAGTGCTGGTGCTGATCGCGTTATTTGTAATCCTGGCACCGATGCTTTCCCAGTTTGCCTATGACGATACTGACTGGGCGATGATGTCCAGCGCCC  >  NC_000913/1303564‑1304059
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                         
tCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTAAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCggtg                                                                                                                                                                                                                                                       >  1:21989‑M1/1‑247 (MQ=255)
                      tggctggacgctgtatgaatcccgcctgcagggaaagctgcacgtaatcagcaagagatatccgccgcgaattgagcggcataacctgcatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtaatcgggcattatctgaacataaaacactatcaataagatggagtcattaccCGAAAATCCGTTACTGCTACTGGAgctcgcgctg                                                                                                                                                                                                                                 >  2:178522‑M2/218‑248 (MQ=255)
                       tACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTTTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCggtgatgctgccaacttactgattta                                                                                                                                                                                                                                 <  1:37837‑M1/250‑27 (MQ=255)
                              gCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGCTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCCGTTACTGATACTGGAGCTCGCGATGATGTtaag                                                                                                                                                                                                                         <  2:87607/251‑1 (MQ=255)
                                  tctTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACAATTTATGGTTTGCCGGGGATTGGCCAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCggtgatgctgccaacttactgatttagtgtatgatggg                                                                                                                                                                                                                     >  2:298240‑M1/1‑213 (MQ=255)
                                  gtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatcggaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaaggcatcgggcattatctgaacataaatcactaacaataagttggaggcattaccCGAAAATCCGTTACTGATACTGGAGCTCGCGATGATGTtaagta                                                                                                                                                                                                                       <  1:178522‑M2/44‑1 (MQ=255)
                                     ataatcccgcctgaagggaaagctccacgtaatccgcaagcgatatacgcagcgaattgaacggcataacctgaatctgaggcagcacctggcacggctggtacggaagtcgctgtcgttctcaaaaacggttgagctgcatgacaaagtcatcgtgcattatctgaacataaaacactatcaataagttgcagtcattaccCGAAAATCCGTTACTGATACTAGGGCTCGCGATGATGTTAAGTAAGaaa                                                                                                                                                                                                                  <  2:14307‑M2/49‑1 (MQ=255)
                                                      tGTCGGCATTATTTCCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCTGTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCggtgatgcggccaacttactgatttagtgtatgatgttgtttttgaggtgctccagt                                                                                                                                                                                                  <  2:117294‑M1/250‑58 (MQ=255)
                                                           gCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc                                                                                                                                                                                            <  2:84970‑M1/251‑64 (MQ=255)
                                                               tattaCCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCCGTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCa                                                                                                                                                                                         <  2:213809/250‑1 (MQ=255)
                                                               acgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacgtctgggactgaagtcgctgtcgttctctaaatcgttggagctgcatgacaaagtcatctgtcattatctgaacataaaacactatcaagaagttggattcattaccCGAAAATCCTTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAg                                                                                                                                                                                        <  1:17838‑M2/75‑1 (MQ=255)
                                                                            aTGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATGTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCCGGTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACTCTGGAAAATTTCAGTGAAAAGCTGGAg                                                                                                                                                                           <  2:20780/251‑1 (MQ=255)
                                                                                            tttATGGTTTGCCGGGAATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctac                                                                                                                                                           >  2:221967‑M1/1‑155 (MQ=255)
                                                                                                 ggTTTGCCGGTGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATTCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCCGTTACTTATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTtgtg                                                                                                                                                       <  1:151150/250‑1 (MQ=255)
                                                                                                 ggTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCCGTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTc                                                                                                                                                                                          >  2:219524/1‑215 (MQ=255)
                                                                                                 ggTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCCGTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTc                                                                                                                                                                                          <  1:219524/215‑1 (MQ=255)
                                                                                                               tGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTCAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCCGTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGTc                                                                                                                                         <  2:255166/250‑1 (MQ=255)
                                                                                                                             ctggcacggctgggccgggagtcgctgtcgttctcaacatcggtggagctgcatgacaaagtcctcgggcattatctgaacataaaacactatcaataagttggagtcattaccCGAAAATCCGTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGGCGGCATTTTATGCAt                                                                                                                           >  2:216027‑M2/115‑250 (MQ=255)
                                                                                                                                 cacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCGAAAATCCGTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGTCGACGTTTTATGCATAACCg                                                                                                                      >  1:160861‑M2/111‑251 (MQ=255)
                                                                                                                                            cggaagtcgctgtcgatcacaaaatcggtggagctgcatgacaaagtcaccgggcattatctgaacataaaacactatcaagaagttggagtcattaccCGAAAAGCCGTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGCAAAACAGCGAGACGCTGGAAAATTGCAGTGAAAAGCTGGAGTTCAAATGGCGCAGCTTGTGGCAGGACGCACGGCGACGttgtatacagaacctttctgaggttg                                                                                                           <  2:308849‑M2/152‑13 (MQ=255)
                                                                                                                                                      ttCCTTAGTGTTAAGCCTGACCATCCTGGTTGCTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGCAACTCCGTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGTCGACGTTTTATGCATAACCGTGCGGCGGGTGCCAGTCTggt                                                                                                 >  1:30051/1‑249 (MQ=255)
                                                                                                                                                       tCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTCATGCCATTGTCGATGTGCTATCTGCGGTTATCGACCCGAAAATCggtgatgctgccaacttactgatttagtgtatgctggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcacaagcaccgccggacatcagcgctatctctgctctc                                                                                                >  1:130112‑M1/1‑96 (MQ=255)
                                                                                                                                                          ttAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCCGTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGGCGCCGTTTTATGCATAACCGTGCGGCGGTTGCCAGTCTggtatgg                                                                                             >  2:292532/1‑245 (MQ=255)
                                                                                                                                                           tAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacagcagcgctatctctgctctcac                                                                                              <  1:105610‑M1/249‑158 (MQ=255)
                                                                                                                                                               caaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCGAAAATCCGTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGTCGACGTTTTATGCATAACCGTGCGGCGGTTGCCAGTCTGATAgtgctg                                                                                          <  1:311819‑M2/169‑1 (MQ=255)
                                                                                                                                                                  aaGCCTGCCCATCCTGGTTGGGTCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTGATCGACCCGAAAATCggtgatgctgccaacttactgagttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctagcagccgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcgcggccggacatcagcgcgagcgctgctgtcgctgccgtaa                                                                                      <  2:211866‑M1/250‑166 (MQ=255)
                                                                                                                                                                     ccTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATATGCTATATGCGGTTATCGACCCACCAATCCGATAACGATACTGGAGCTCGCGATGATGCTAAGTAAGCAAAACAGCGAGCCGCAGGAAAATTTCAGTGAAAAGCTGGAAGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGTAAACGTTTTATGCATAACCGTGCGCCGGTTGCCAGtttcgtagggatggggctgat                                                                                  >  1:158233/1‑231 (MQ=255)
                                                                                                                                                                           agctgcatgacaaagtcatcgggcattatatgaacataaaacactatcaataagttggagtcattaccCGAAAATCCGTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGTCGACGTTTTATGCATAACCGTGCGGCGGTTGCCAGGCTGATAGGGCTGGTGCTGatcgcggt                                                                            >  1:98132‑M2/69‑249 (MQ=255)
                                                                                                                                                                              tctGGTTGGTGATTTAACCATTTTGTTTAATGCAATTGTCGATGTGCTCTATGCGGTTATCGAACCGAAAATCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggagctccagtggcttatgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctttgctatcactgccgtaaaacacggcacctg                                                                         >  2:17838‑M1/2‑73 (MQ=255)
                                                                                                                                                                                            tAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAATATCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgccgttcacttacac                                                           >  2:86515‑M1/1‑59 (MQ=255)
                                                                                                                                                                                             aaCCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacacc                                                          >  1:159774‑M1/1‑58 (MQ=255)
                                                                                                                                                                                              aCCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCCGTTACGGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGTCGACGGTTTATGCATAACCGTGCGGCGGGTGCCAGTCTGATAGTGCTGGTGCTGATCGCGTTATTTGTAATCCTGGCACCg                                                         <  2:224371/251‑1 (MQ=255)
                                                                                                                                                                                                              ccATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCCGTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGTCGACGTTTTATGCATAACCGTGCGGCGGTTGCCAGTCTGATTGGGCTGGTGCTGGTCGCGTTTTTTGTAATCCTGGCACCGGTGCTTTCCCAGTTTg                                         >  1:174161/1‑251 (MQ=255)
                                                                                                                                                                                                                          tgCTATATGCGGTTATCGACCCGAAAATCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaccccggtacgccccagaaaac                             >  2:83699‑M1/1‑29 (MQ=255)
                                                                                                                                                                                                                          caataagttggagtcattaccCGAAAATCCGGTCCTGATACTGGAGCTCGCGATGATGTTACGTACGAAAAACAGCGAGACGATGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCAAGTCGACGTTTTATGCATAACCGTGCGGCGGTTGTACGTCAGAGAGGGCTGGTGTTGATGGCGTTATTTGTCATCCTGGGACCGATGATTTCCCAGTTTGCCTCTGACGAt                              >  2:283840‑M2/22‑250 (MQ=255)
                                                                                                                                                                                                                                atGCGGTTATCGACCCGAAAATCggtgatgctgccaactgactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattga                       <  1:288621‑M1/251‑229 (MQ=255)
                                                                                                                                                                                                                                            aCCCGAAAATCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccatga            >  2:12023‑M1/1‑11 (MQ=255)
                                                                                                                                                                                                                                                      cggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtccgcaccagaaaatcattgatatggccatgaatggcgttgg  >  1:161404‑M1/1‑1 (MQ=255)
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                         
TCACGCATTAAAACCTGCTCTGTTACCCGTGCTCTCTTATATGGGCCCCGCATTTGTCGGCATTATTACCGGTTCTATGGTTATCGAAACCATTTATGGTTTGCCGGGGATTGGACAACTGTTCGTTAATGGCGCATTGAACCGTGACTATTCCTTAGTGTTAAGCCTGACCATCCTGGTTGGTGCTTTAACCATTTTGTTTAATGCCATTGTCGATGTGCTATATGCGGTTATCGACCCGAAAATCCGTTACTGATACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTCGAAGGGCGCAGCTTGTGGCAGGACGCACGTCGACGTTTTATGCATAACCGTGCGGCGGTTGCCAGTCTGATAGTGCTGGTGCTGATCGCGTTATTTGTAATCCTGGCACCGATGCTTTCCCAGTTTGCCTATGACGATACTGACTGGGCGATGATGTCCAGCGCCC  >  NC_000913/1303564‑1304059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.