| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,411,035 | G→A | G106G (GGC→GGT) | yfbS ← | putative transporter YfbS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,411,035 | 0 | G | A | 95.2% | 59.2 / ‑3.5 | 21 | G106G (GGC→GGT) | yfbS | putative transporter YfbS |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (10/10); total (10/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.21e-01 | |||||||||||
CCAGCACGACCAGGCCAATAGGTGTTACGCTAAAGAAACTGAAGCCGTGATAGCCTTCACGCAGCAATTCACTGTTGACTACCAGGTTCGGCGGCGTCGCCACCAGCGTCATCATGCCGCTAATCAGCCCGGCAAAACTTAACGGCATCATCAGACGTGACGGCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCGCCAAGCCCCGCGACGGTCAGCATCAACAAAACCAACATTTTGATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCATTACGGTGGCAACACCGGTACGGACCAAACCATCGCCAATAATAAACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCGCATCCATAC > NC_000913/2410794‑2411279 | ccagcacGACCAGGCCAATAGGTGTTACGCTAAAGAAACTGAAGCCGTGATAGCCTTCACGCAGCAATTCACTGTTGACTACCAGGTTCGGCGGCGTCGCCACCAGCGTCATCATGCCGCTAATCAGCCCGGCAAAACTTAACGGCATCATCAGACGTGACGGCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCGCCAAGcccc < 1:135166/251‑1 (MQ=255) cGACCAGGCCAATAGGTGTTACGCTAAAGAAACTGAAGCCGTGATAGCCTTCACGCAGCAATTCACTGTTGACTACCAGGTTCGGCGGCGTCGCCACCAGCGTCATCATGCCGCTAATCAGCCCGGCAAAACTTAACGGCATCATCAGACGTGACGGCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCACCAAGCCCCGCGACg < 1:142013/251‑1 (MQ=255) ggCCAATAGGTGTTACGCTAAAGAAACTGAAGCCGTGATAGCCTTCACGCAGCAATTCACTGTTGACTACCAGGTTCGGCGGCGTCGCCACCAGCGTCATCATGCCGCTAATCAGCCCGGCAAAACTTAACGGCATCATCAGACGTGACGGCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCACCAAGCCCCGCGACGGTCAGc < 2:42339/251‑1 (MQ=255) aGGTGTTACGCTAAAGAAACTGAAGCCGTGATAGCCTTCACGCAGCAATTCACTGTTGACTACCAGGTTCGGCGGCGTCGCCACCAGCGTCATCATGCCGCTAATCAGCCCGGCAAAACTTAACGGCATCATCAGACGTGACGGCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCACCAAGCCCCGCGACGGTCAGCATcaaca < 1:184930/251‑1 (MQ=255) gtTACGCTAAAGAAACTGAAGCCGTGATAGCCTTCACGCAGCAATTCACTGTTGACTACCAGGTTCGGCGGCGTCGCCACCAGCGTCATCATGCCGCTAATCAGCCCGGCAAAACTTAACGGCATCATCAGACGTGACGGCGACGGTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCACCAAGCCCCGCGACGGTCAGCATCAACaaaa < 2:99294/250‑1 (MQ=255) aGGTTCGGCGGCGTCGCCCCCAGCGTCATCATGCCGCTAATCAGCACGGCAACACTTAACGGCATCATCAGACGTGACGGCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGACCTCATAAACGCACCAAGCCCCGCGACGGTCAGCATCACCAAACCCAACATTTTGATTTCCCTATTGCCCGCACCTTTGACCAGCCATGTTCCCATTACGGTGGc > 2:182785/1‑251 (MQ=255) ggTTCGGCGGCGTCGCCACCAGCGTCATCATGCCGCTAATCAGCCCGGCAAAACTTAACGGCATCATCAGACGTGACGGCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCACCAAGCCCCGCGACGGTCAGCATCAACAAAACCAACATTTTGATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCATTACGGTGGCa < 2:70525/251‑1 (MQ=255) caccaGCGTCATCATGCCGCTAATCAGCCCGGCAAAACTTAACGGCATCATCAGACGTGACGGCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCACCAAGCCCCGCGACGGTCAGCATCAACAAAACCAACATTTTGATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCATTACGGTGGCAACACCGGTACGGAcc > 2:241635/1‑250 (MQ=255) accaGCGTCATCATGCCGCTAATCAGCCCGGCAAAACTTAACGGCATCATCAGACGTGACGGCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCACCAAGCCCCGCGACGGTCAGCATCAACAAAACCAACATTTTGATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCATTACGGTGGCAACACCGGTACGGACCa > 1:195660/1‑250 (MQ=255) aGCGTCATCATGCCGCTAATCAGCCCGGCAAAACTTAACGGCATCATCAGACGTGACGGCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCACCAAGCCCCGCGACGGTCAGCATCAACAAAACCAACATTTTGATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCATTACGGTGGCAACACCGGTACGGACCAAAcc < 1:119510/251‑1 (MQ=255) tcatGCCGCTAATCAGCCCAGCAAAACTTAACGGCATCATCAGACGAGACGGCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCACCAAGCCCCGCGACGGTCAGCATCAACAAAACCAACATTTTGATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCATTACGGTGGCAACACCGGTACGGACCAAACCATCGcc > 1:125170/1‑250 (MQ=255) cAAAACTTAACGGCACCATTATACGTGACGGCGTCGTTGGCAATCGCATGGCAACGCTTAACTCCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCAAAAACGCACCAAGCCCCGAGACGGTCAGCATCAACAAAACCAACAGTTTTATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCATGACTGTGGCAACGCCGGTACGGCCCAAACCATCGCCAATAATAAACAATGCGGCAATc < 2:11820/251‑1 (MQ=255) aattAACGGCATCATCAGACGTGACGGCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGACGGTTGAACTCATAAAAGCACCAAGCCACGCGACGGTCAGCATCCACAAAACCAACATTTTGATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCATTACGGAGGAAACACCGGTACGGACCAAACCATCGCCAATAATCAACCAGGCGGCAATccgg > 2:2338/3‑247 (MQ=255) cTTAACGGCATCATCAGACGTGACGGCGACGTTTGCATACGCATGGCATCGCTTAACACCACGGGAATAAAGATAGCGAAAACGCAGGATGAAATCATAAACGCACCAAGCACCGCGACGGTCAGCATCAACAAACCCAACATTTTGCTTTCACTCTTGCCCGCAACTTTGACCAGCCATGTTCACATTACGGTGGCAACACCGGTACCGACCAAACCATCGCCAATAATAAACAAGGCGGCACTCAGGAc > 1:135556/1‑251 (MQ=255) caGACGTGACGGCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCACCAAGCCCCGCGACGGTCAGCATCAACAAAACCAACATTTTGATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCATTACGGTGGCAACACCGGTACGGACCAAACCAGCGCCAATAATAAACAAGGCGGCAATCAGGACAACGTTAGGATCAg < 1:182785/251‑1 (MQ=255) ggCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCAGGTTGAACTCATAAACGCACCAAGCCCCGCGACGGTCAGCATCAACAAAACCAACATTTTGATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCATTACGGTGGCAACACCGGTACGGACCAAACCATCGCCACTAATAAACCAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCgg > 2:232392/1‑250 (MQ=255) tttGAATACGCAGGGCAACGCTTAACACAACGGGAATAAAGTTAGAGACAACATCGGTTGAACTCATAAACGCACAAAGCCCCGCGACGCTCAGCATCAACAAAACAAACATTTTGATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCATGACGGTGGCAACACCGGAACGTACAAAACAATCGCGAACAATAAACACGGCGGCTATAAGGACAACGTTAGGATCAGCAAACACGGACAATACt > 2:139819/1‑251 (MQ=255) aTGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCACCAAGCCCCGCGACGGTCAGCATCAACAAAACCATCATTTTGATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCAGTACGGTGGCAACACCGGTACGGACCAAACCATCGCCAATAATAAACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGt < 1:232392/251‑1 (MQ=255) caccacGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCACCAAGCCCCGCGACGGTCAGCATCAACAAAACCAACATTTTGATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCATTACGGTGGCAACACCGGTACGGACCAAACCATCGCCAATAATAAACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTa < 1:70373/251‑1 (MQ=255) tAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCACCAAGCCCCGCGACGGTCAGCATCAACAAAACCAACATTTTGATTTCACTATTGACCGCAACTTTGACCAGCCATGTTCCCATTACGGAGGCAAAACCGGTACGGACCAAAACATCGCCAATAATAAACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCAGGAAAATACTTCTGGGACTGTCCGCGTTCCGCTTAATGCAAAcg > 1:214828/1‑249 (MQ=255) aaaCGCACCAAGCCCCGCGACGGTCAGCATCAACAAAACCAACATTTTGATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCATTACGGTGGCAACACCGGTACGGACCAAACCATCGCCAATAATAAACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCGCATCCATAc > 1:98681/1‑251 (MQ=255) | CCAGCACGACCAGGCCAATAGGTGTTACGCTAAAGAAACTGAAGCCGTGATAGCCTTCACGCAGCAATTCACTGTTGACTACCAGGTTCGGCGGCGTCGCCACCAGCGTCATCATGCCGCTAATCAGCCCGGCAAAACTTAACGGCATCATCAGACGTGACGGCGACGTTTGCATACGCATGGCAACGCTTAACACCACGGGAATAAAGATAGCGACAACGCCGGTTGAACTCATAAACGCGCCAAGCCCCGCGACGGTCAGCATCAACAAAACCAACATTTTGATTTCACTATTGCCCGCAACTTTGACCAGCCATGTTCCCATTACGGTGGCAACACCGGTACGGACCAAACCATCGCCAATAATAAACAAGGCGGCAATCAGGACAACGTTAGGATCAGAAAAGCCGGAAAATACTTCTGGGACTGTCAGCGTTCCGCTTAATGCAAACGCGACAATAACAAACAAAGCGACCGCATCCATAC > NC_000913/2410794‑2411279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |