Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 233,353 C→T R201R (CGG→CGA mltD ← membrane‑bound lytic murein transglycosylase D

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913233,3530CT97.0% 94.2 / ‑6.3 33R201R (CGG→CGAmltDmembrane‑bound lytic murein transglycosylase D
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (16/16);  minor base A (0/1);  total (16/17)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CTTGCTGACGGAAATCCCCGCCATATCTGCTACCTTCGCCATTTCAACCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACCCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGTGCTCGGAATGATCTGCCAGATGCCTGCGGCATTGGCGCCAGACGTTGCGTGAGGATCAAAAGCGCTCTCCACTATGGG  >  NC_000913/233104‑233592
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                               
tttgcttcggacattcaccGCCATATCTGCTACCTTCGCCATGTCCACCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGTCTTTCATCGGTCGTTGGCAGACGTCCGCCATAACGCTTGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGAcc                                                                                                                                                                                                                                                 <  1:5422/233‑1 (MQ=255)
             aTCCCCGCCATATCTGCTCCATAAGCCATTACAACCGGGCTGCTCAAGTGCACACGCGCCAGAGCACGGCTGTCATAGGTTGTTGGCAGACGTACGCCAGAACGCTCGCTGTTTCTGGAACTATCACTCAATGCCAGCATTTTCGGCACATACTGCTTAGATTCCTGCGGAAACCGTAACGACCAGAAGTCCGTGGATTTCCCACTCGCTTTGTAAGTTTTTATTGCATTCATGACTCGACATTCGCAGCt                                                                                                                                                                                                                                   >  2:167786/1‑251 (MQ=255)
                  cGCCATATCTGCTACCTTCGCCATTTCAACCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTtat                                                                                                                                                                                                                              <  1:248552/251‑1 (MQ=255)
                   gCCATATCTGCTACCTTCGACATTTCAACCGGGCTGCTCAGGTGCACACGCGCGAGAGCACGGCTTTCATCGGTCGTTTGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAATATCACTCCATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGACCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTtat                                                                                                                                                                                                                              >  2:231821/1‑250 (MQ=255)
                     cATATCTGCTACCCTCGCCATTTCAACCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGTCCTTCGCCGCTGTTAAAAg                                                                                                                                                                                                                           <  2:88459/251‑1 (MQ=255)
                                ccTTCGCCATTTCAACCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTc                                                                                                                                                                                                                <  1:92330/251‑1 (MQ=255)
                                        agttCAGCCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCAGCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAATATCGCTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGATCAGAAGTCCGTGGATTTCCCACGTGCTTTGTTCGTTTTAATTGCCTGCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCa                                                                                                                                                                                                        <  1:151225/249‑1 (MQ=255)
                                        aTTTCAACCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGcc                                                                                                                                                                                                         >  1:255456/1‑250 (MQ=255)
                                              aCCGGGCTGCTCAGGTGCACCCGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGCTTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGcc                                                                                                                                                                                                  >  1:90919/1‑251 (MQ=255)
                                               ccGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCg                                                                                                                                                                                                 >  2:261264/1‑251 (MQ=255)
                                                   gctgctCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTcgcc                                                                                                                                                                                                                                      <  2:66123/210‑1 (MQ=255)
                                                                      gacAGAGCACGGCTTTCATCGGTCGTTGGCAGACGAACGCCATAACGCTTGCTGTTTTTGAGCATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCACCGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGTCCTTCGCCGCTGTTATAAGCCGCTACGGTCAAAATCCAGTCGCACTCAACCATTTTGTTCAGTCGcgg                                                                                                                                                                          >  2:165367/3‑249 (MQ=255)
                                                                                                  gCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCATTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGa                                                                                                                                               >  2:97715/1‑250 (MQ=255)
                                                                                                      ccGTACGCCATAACGCTTGCTGTTTTTGAGAATAGCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAATCATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGcaa                                                                                                                                          <  2:41272/250‑1 (MQ=255)
                                                                                                        gTACGCCATAACGCTTGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTACGTTTCCTGCGGCAACGGTACCGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGGCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGcaaca                                                                                                                                        <  1:231821/251‑1 (MQ=255)
                                                                                                            gCCATAACGCTTGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTCCGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACAt                                                                                                                                    >  1:51968/1‑251 (MQ=255)
                                                                                                                      ttGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGCTTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGAcgcgc                                                                                                                          >  2:76800/1‑251 (MQ=255)
                                                                                                                       tGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGAcgcg                                                                                                                           <  2:90919/249‑1 (MQ=255)
                                                                                                                                tGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAAtt                                                                                                                 <  2:156379/250‑1 (MQ=255)
                                                                                                                                  agaATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCg                                                                                                              >  1:151638/1‑251 (MQ=255)
                                                                                                                                    aaTATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGCCGCGCGTCATAATTGCggg                                                                                                            >  1:153140/1‑251 (MQ=255)
                                                                                                                                    aaTATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCggg                                                                                                            >  1:133348/1‑251 (MQ=255)
                                                                                                                                          cACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGt                                                                                                       <  2:188543/251‑1 (MQ=255)
                                                                                                                                                        aTTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAAtt                                                                                         >  2:154497/1‑251 (MQ=255)
                                                                                                                                                                 aCGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCCCGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGAAGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGCCGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGt                                                                                >  2:263201/1‑251 (MQ=255)
                                                                                                                                                                   ggaCTGCTTCGTTTCCTGCGGCAACGGTAACGACTAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGGTTCAAACCATAATTGCGCCCCGTGc                                                                              <  2:243893/249‑1 (MQ=255)
                                                                                                                                                                     aCTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGTGCTc                                                                            <  1:154497/251‑1 (MQ=255)
                                                                                                                                                                           tcttttCCTTCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGTGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGTGCTCGGAAt                                                                       <  1:10638/247‑1 (MQ=255)
                                                                                                                                                                             gTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGTGCTTGGAATGAt                                                                    >  1:88347/1‑251 (MQ=255)
                                                                                                                                                                                tCCTGCGGCAACGGTAACGACTAGATGTCCATGGATTGCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACACGACCTTCGGCGCGGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCGGGCGCGGCATCATATGCAGGGCGGCAGGTGTTGAAGCAAGAACATGGCGGGGCGCGTCATAATTGCGGGGCGGTTTCAAACCATAATTGCGCCGCGTGCTCGGAATGATCt                                                                  <  2:128651/250‑1 (MQ=255)
                                                                                                                                                                                            ggTAACGCCCAGAAGTCCGTGGATTTCCCACGCGATTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGCTATAAGCAGCTCCGGTCAGAAGCCAGTCGACGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGATGTTGAGGCAACAACATCGCGACGCGCGTCATACTTGCGGGACTGTTTCACACCATAATTACGACCCGTGCTCGGAATGTTCTACCCGATGCCTGc                                                     >  2:228739/1‑251 (MQ=255)
                                                                                                                                                                                                            ccGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGTGCTCGGAATGATCTGCCAGATGCCTGCGGCATTGGCGCCAGa                                      <  1:263201/250‑1 (MQ=255)
                                                                                                                                                                                                            ccGTGGATTGCCCTCGCGCTGTGTTCGTTTTAATTGCCTTCAGGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGGCTGTTTCAAACCATAATTGCGCCCCGTGCTCGGAATGATCTGCCAGATGCCTGCGGCATTGGCGCCAGAc                                     <  1:169722/251‑1 (MQ=255)
                                                                                                                                                                                                                                               gCCTTCATGACTCGACCGTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCGGCATCATATTCAGCGCGGCAGTTGGTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGTGCTCGGAATGATCTGCCAGATGCCTGCGGCATTGGCGCCAGACGTGGCGTGAGGATCAAAAGCGCGCTCCACTATggg  <  1:49707/251‑1 (MQ=255)
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                               
CTTGCTGACGGAAATCCCCGCCATATCTGCTACCTTCGCCATTTCAACCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAATATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACCCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGTGCTCGGAATGATCTGCCAGATGCCTGCGGCATTGGCGCCAGACGTTGCGTGAGGATCAAAAGCGCTCTCCACTATGGG  >  NC_000913/233104‑233592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: