| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 233,353 | C→T | R201R (CGG→CGA) | mltD ← | membrane‑bound lytic murein transglycosylase D |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 233,353 | 0 | C | T | 97.0% | 94.2 / ‑6.3 | 33 | R201R (CGG→CGA) | mltD | membrane‑bound lytic murein transglycosylase D |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (16/16); minor base A (0/1); total (16/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTTGCTGACGGAAATCCCCGCCATATCTGCTACCTTCGCCATTTCAACCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACCCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGTGCTCGGAATGATCTGCCAGATGCCTGCGGCATTGGCGCCAGACGTTGCGTGAGGATCAAAAGCGCTCTCCACTATGGG > NC_000913/233104‑233592 | tttgcttcggacattcaccGCCATATCTGCTACCTTCGCCATGTCCACCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGTCTTTCATCGGTCGTTGGCAGACGTCCGCCATAACGCTTGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGAcc < 1:5422/233‑1 (MQ=255) aTCCCCGCCATATCTGCTCCATAAGCCATTACAACCGGGCTGCTCAAGTGCACACGCGCCAGAGCACGGCTGTCATAGGTTGTTGGCAGACGTACGCCAGAACGCTCGCTGTTTCTG‑GAACTATCACTCAATGCCAGCATTTTCGGCACATACTGCTTAGATTCCTGCGGAAACCGTAACGACCAGAAGTCCGTGGATTTCCCACTCGCTTTGTAAGTTTTTATTGCATTCATGACTCGACATTCGCAGCt > 2:167786/1‑251 (MQ=255) cGCCATATCTGCTACCTTCGCCATTTCAACCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTtat < 1:248552/251‑1 (MQ=255) gCCATATCTGCTACCTTCGACATTTCAACCGGGCTGCTCAGGTGCACACGCGCGAGAGCACGGCTTTCATCGGTCGTTTGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAA‑TATCACTCCATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGACCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTtat > 2:231821/1‑250 (MQ=255) cATATCTGCTACCCTCGCCATTTCAACCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGTCCTTCGCCGCTGTTAAAAg < 2:88459/251‑1 (MQ=255) ccTTCGCCATTTCAACCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTc < 1:92330/251‑1 (MQ=255) agttCAGCCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCAGCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAA‑TATCGCTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGATCAGAAGTCCGTGGATTTCCCACGTGCTTTGTTCGTTTTAATTGCCTGCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCa < 1:151225/249‑1 (MQ=255) aTTTCAACCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGcc > 1:255456/1‑250 (MQ=255) aCCGGGCTGCTCAGGTGCACCCGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGCTTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGcc > 1:90919/1‑251 (MQ=255) ccGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCg > 2:261264/1‑251 (MQ=255) gctgctCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTcgcc < 2:66123/210‑1 (MQ=255) gacAGAGCACGGCTTTCATCGGTCGTTGGCAGACGAACGCCATAACGCTTGCTGTTTTTGAGCA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCACCGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGTCCTTCGCCGCTGTTATAAGCCGCTACGGTCAAAATCCAGTCGCACTCAACCATTTTGTTCAGTCGcgg > 2:165367/3‑249 (MQ=255) gCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCATTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGa > 2:97715/1‑250 (MQ=255) ccGTACGCCATAACGCTTGCTGTTTTTGAGAA‑TAGCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAATCATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGcaa < 2:41272/250‑1 (MQ=255) gTACGCCATAACGCTTGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTACGTTTCCTGCGGCAACGGTACCGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGGCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGcaaca < 1:231821/251‑1 (MQ=255) gCCATAACGCTTGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTCCGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACAt > 1:51968/1‑251 (MQ=255) ttGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGCTTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGAcgcgc > 2:76800/1‑251 (MQ=255) tGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGAcgcg < 2:90919/249‑1 (MQ=255) tGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAAtt < 2:156379/250‑1 (MQ=255) agaA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCg > 1:151638/1‑251 (MQ=255) aa‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGCCGCGCGTCATAATTGCggg > 1:153140/1‑251 (MQ=255) aa‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCggg > 1:133348/1‑251 (MQ=255) cACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGt < 2:188543/251‑1 (MQ=255) aTTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAAtt > 2:154497/1‑251 (MQ=255) aCGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCCCGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGAAGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGCCGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGt > 2:263201/1‑251 (MQ=255) ggaCTGCTTCGTTTCCTGCGGCAACGGTAACGACTAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGGTTCAAACCATAATTGCGCCCCGTGc < 2:243893/249‑1 (MQ=255) aCTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGTGCTc < 1:154497/251‑1 (MQ=255) tcttttCCTTCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGTGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGTGCTCGGAAt < 1:10638/247‑1 (MQ=255) gTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGTGCTTGGAATGAt > 1:88347/1‑251 (MQ=255) tCCTGCGGCAACGGTAACGACTAGATGTCCATGGATTGCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACACGACCTTCGGCGCGGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCGGGCGCGGCATCATATGCAGGGCGGCAGGTGTTGAAGCAAGAACATGGCGGGGCGCGTCATAATTGCGGGGCGGTTTCAAACCATAATTGCGCCGCGTGCTCGGAATGATCt < 2:128651/250‑1 (MQ=255) ggTAACGCCCAGAAGTCCGTGGATTTCCCACGCGATTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGCTATAAGCAGCTCCGGTCAGAAGCCAGTCGACGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGATGTTGAGGCAACAACATCGCGACGCGCGTCATACTTGCGGGACTGTTTCACACCATAATTACGACCCGTGCTCGGAATGTTCTACCCGATGCCTGc > 2:228739/1‑251 (MQ=255) ccGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGTGCTCGGAATGATCTGCCAGATGCCTGCGGCATTGGCGCCAGa < 1:263201/250‑1 (MQ=255) ccGTGGATTGCCCTCGCGCTGTGTTCGTTTTAATTGCCTTCAGGACTCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGGCTGTTTCAAACCATAATTGCGCCCCGTGCTCGGAATGATCTGCCAGATGCCTGCGGCATTGGCGCCAGAc < 1:169722/251‑1 (MQ=255) gCCTTCATGACTCGACCGTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCGGCATCATATTCAGCGCGGCAGTTGGTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGTGCTCGGAATGATCTGCCAGATGCCTGCGGCATTGGCGCCAGACGTGGCGTGAGGATCAAAAGCGCGCTCCACTATggg < 1:49707/251‑1 (MQ=255) | CTTGCTGACGGAAATCCCCGCCATATCTGCTACCTTCGCCATTTCAACCGGGCTGCTCAGGTGCACACGCGCCAGAGCACGGCTTTCATCGGTCGTTGGCAGACGTACGCCATAACGCTTGCTGTTTTTGAGAA‑TATCACTCAATGCCAGCATTTTAGGCACGTACTGCTTCGTTTCCTGCGGCAACGGTAACGACCAGAAGTCCGTGGATTTCCCACGCGCTTTGTTCGTTTTAATTGCCTTCATGACCCGACCTTCGCCGCTGTTATAAGCCGCTACGGTCAGAAGCCAGTCGCCGTCAAACATTTTGTTCAGACGCTGCATCATATTCAGCGCGGCAGTTGTTGAAGCAACAACATCGCGACGCGCGTCATAATTGCGGGTCTGTTTCAAACCATAATTGCGCCCCGTGCTCGGAATGATCTGCCAGATGCCTGCGGCATTGGCGCCAGACGTTGCGTGAGGATCAAAAGCGCTCTCCACTATGGG > NC_000913/233104‑233592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |