| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,600,491 | C→A | A251S (GCA→TCA) | lsrR ← | DNA‑binding transcriptional repressor LsrR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,600,491 | 0 | C | A | 95.2% | 60.0 / ‑3.1 | 21 | coding (751/954 nt) | lsrR | DNA‑binding transcriptional repressor LsrR |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base A (10/10); minor base . (0/1); total (10/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01 | |||||||||||
GCCGCTGCTGTG‑TCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCT‑TTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCGTCCTGTTGACTCACAGCACCAATGCCGACAATCGCCACATCCGCTGCTTGCGCGGCTAACAGAACATCTTTGACGCAATTTTCATTTTTTAGCGTACGGGCAATGTCAGCGGAGGAT > NC_000913/1600304‑1600708 | gccgcTGC‑GTGGTCCTGATCGGTACCCATTGTGTTGATATAACCGCCTTTCATGGCACCGGCAATTGCTTCG‑CTGTTATTTTCTCCCCCTGCCACGCCTCCCCGGACGGGTATGGTCTTCAGCGCGCTTAAATGTAGGCCAATCAGTTCGGTAGGTATTTTGATTTTCGTGACAGCGTCACTTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAAGCATTAATTGTTCGcc < 1:164481/251‑1 (MQ=255) ccgcTGCTGTG‑TCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCT‑TTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGccc > 2:50918/1‑251 (MQ=255) gtgcccTGATCGGTACCCAGTGTGTTGATATAACCGCCTTTTATTGCAGCGGCAATTGCTTCGGCT‑TTATTTTCTCCCCCTGCCACGCCAACCGGGACGGTTATGGTCTTCAGCGCGCTTAAAGTTAAGCCAATCATTTCGTGATGTATTTTGATATTCGTGACAACGCCCCCTTTTG‑ATTAAATAAAGTATCCTAAAATGCCGCCAACCGCCCCTTTTCGGCCAATCATTTACTGTTCGCCCTGGCTGat < 1:32789/247‑1 (MQ=255) g‑tCCTGTTCGGTAACCAGTGCGTTGATATACCCGCCTTTCATTGCAGCGGCAATTGCTTCGGCT‑TTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGata < 1:50918/250‑1 (MQ=255) ccTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCT‑TTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGAtata > 1:88892/1‑250 (MQ=255) aaCCGGTGCGTTGATATACCCGCCTTTCATTGCAGCGGCATTGGTTTCGGCT‑TTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGCGCGCTTAAAGGTAAGCAAATCAGTTCGTTAGGTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTGCGGCCAATCATTAACTGTTCGCCCTGGCTTATATAACCGTAGCGaa < 2:209358/251‑1 (MQ=255) ataACCGCCTTTCATTGCAGCGGCAATTGCTTGGGTT‑TTATTTTCTCCCCCGGCCACGCCAACCCGGACGGGTATGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTGTGATATGCGGGACAACGTCACCATTTGAATCAAA‑AAAGTAGCCAAAAATTTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATAGAACCGGAGCGAATGATTGTCTCATCGt < 2:108977/251‑1 (MQ=255) ataACCGCCTGTCATTGCAGCGGCAATTGCTTCGGCT‑TTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTGCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCGTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGTCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCg < 1:123789/250‑1 (MQ=255) gCGGCAATTGCTTCGGCT‑TTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCGTCCTGTTGACTCACAGCAcc > 2:30610/1‑251 (MQ=255) gggacatggcgtCGGCT‑TTATTGGCTCCCCCTGCCCCGCCAACCCGGTCGGGTTTGGTCTTTCGCGCCCTGAAAGGGAAGCCAATCAGTTCTTTAATTATTTTGATTATCGGGACAACGTCACCTTTTTAATCAAA‑AAAGTAGCCTAAAAGGTCGCCATCCGCCCCTTTCCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATTATTGTCGCATAGTCCTGTTTACTCACATCACCa < 2:23294/240‑1 (MQ=255) tGCTTCGGCT‑TTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCGTCCTGTTGACTCACAGCACCAATGCCg > 1:89354/1‑250 (MQ=255) ctcCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCGTCCTGTTGACTCACAGCACCAATGCCGACAATCGCCACATCCgct > 1:134260/1‑251 (MQ=255) ccAACCCGGACGGGTAGGGGCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCGTCCTGTTGACTCACAGCACCAATGCCGACAATCGCCACATCCGCTGCTTGCGCGGCTaa < 1:196185/251‑1 (MQ=255) gggTATGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCGTCCTGTTGACTCACAGCACCAATGCCGACAATCGCCACATCCGCTGCTTGCGCGGCTAACAGAACATCtt > 1:46582/1‑251 (MQ=255) ggTATGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCGTCCTGTTGACTCACAGCACCAATGCCGACAATCGCCACATCCGCAGCTTGCGCGGCTAACAGAACATCttt > 2:146903/1‑251 (MQ=255) aTGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCGTCCTGTTGACTCACAGCACCAATGCCGACAATCGCCACATCCGCTGCTTGCGCGGCTAACAGAACATCTTTGa < 1:174543/250‑1 (MQ=255) gcTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCGTCCTGTTGACTCACAGCACCAATGCCGACAATCGCCACATCCGCTGCTTGCGCGGCTAACAGAACATCTTTGACGCAATTTTCAtttt > 1:112297/1‑251 (MQ=255) ggTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCGTCCTGTTGACTCACAGCACCAATGCCGACAATCGCCACATCCGCTGCTTGCGCGGCTAACAGAACATCTTTGACGCAATTTTCATTTTTTAGCGt > 1:33662/1‑251 (MQ=255) aaGCCAATCAGTTCGTTATGTATTTTGATATTCTTGCAAACGTCCCCTTTTGAATCAAA‑AAAGTAGCCTAAAAGGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCGTCCTGTTGACTCACAGCACCAATGCCGACAATCGCCACATCCGCTGCTTGCGCGGCTAACAGAACATCTTTGACGCAATTTTCATTTTTTAGCGTAc < 2:81116/250‑1 (MQ=255) cccAACCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGAAACAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCGTCCTGTTGACTCACAGCACCAATGCCGACAATCGCCACATCCGCTGCTTGCGCGGCTAACAGAACATCTTTGACGCAATTTTCATTTTTTAGCGTACggg < 1:230822/250‑1 (MQ=255) gTATTTTGATATTCGTGACAACGTCACCTTTTGAATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCGTCCTGTTGACTCACAGCACCAATGCCGACAATCGCCACATCCGCTGCTTGCGCGGCTAACAGAACATCTTTGACGCCATTTTCATTTTTTAGCGTACGGGCAATGTCAGCGGAGGAt > 1:119228/1‑251 (MQ=255) | GCCGCTGCTGTG‑TCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCT‑TTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAA‑AAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGATATAACCGGAGCGAATGATTGTCGCATCGTCCTGTTGACTCACAGCACCAATGCCGACAATCGCCACATCCGCTGCTTGCGCGGCTAACAGAACATCTTTGACGCAATTTTCATTTTTTAGCGTACGGGCAATGTCAGCGGAGGAT > NC_000913/1600304‑1600708 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |