| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 476,337 | C→T | G12D (GGC→GAC) | ybaZ ← | DNA base‑flipping protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 476,337 | 0 | C | T | 94.7% | 55.6 / NA | 19 | G12D (GGC→GAC) | ybaZ | DNA base‑flipping protein |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (11/7); total (12/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGATTAACCACCCGGTGCCAGGGTAAGGTGCTGCCTTCAGGGAGACGCTTTAACACACCGCCCACCTGGCGCGCGGCGCGGGGCGATCCCGCCAGTTTCGCCACATCACCGTAAGTGGTGACATAGCCTTCGGGAATAGCGGCGACGATTTGCCAGACGCGTTGGGGAAATGAATCTTCTTTTTCCATCTTTTCTTCCTGAGGTAATTTTTCAGCATAATCTGGAAAAACGCCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTTCTCAACGCTCTCAATGGGGGCTCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGCGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCCCACCGT > NC_000913/476106‑476579 | cGATTAACCACCCGGTGCCAGGGTAAGGTGCTGCCTTCAGGGAGACGCTTTAACACACCGCCCACCTGGCGCGCGGCGCGGGGCGATCCCGCCAGTTTCGCCACATCACCGTAAGTGGTGACATAGCCTTCGGGAATAGCGGCGACGATTTGCCAGACGCGTTGGGGAAATGAATCTTCTTTTTCCATCTTTTCTTCCTGAGGTAATTTTTCAGCATAATCTGGAAAAACGTCCGAGTGAAGTCGCATTgc < 1:49874/251‑1 (MQ=255) gCCAGGGTAAGGTGCTGCCTGCAGGGAGACGCTTTAACACACCGCCCACCTGGCGCGCGGCGCGGGGCGATCCCGCCAGTTTCGCCACATCACCGTAAGTGGTGACATAGCCTTCGGGAATAGCGGCGACGATTTGCCAGACGCGTTGGGGAAATGAATCTTCTTTTTCCATCTTTTCTTCCTGAGGTAATTTTTCAGCATAATCTGGAAAAACGTCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATc < 2:84622/251‑1 (MQ=255) cAGGGAGACGCTGTAACACACCGCCCACCTGGCGCGCGGCGCGGGGCGATCCCGCCAGTTTCGCCACATCCCCGTAAGTGGTGACATAGCCTTCGGGAATAGCGGCGACGATTTGCCAGACGCGTTGGGGAAATGAATCTTCTTTTTCCATCCTTTCTTCCTGAGGTAATTTTTCAGCATAATCTGGAAAAACGTCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAAt > 1:114909/1‑251 (MQ=255) cGCCCACCTAGCGCGCGGCGCGGGGCGATCCCGCCAGTTTCGCCACATCACCGTAAGCGGTGACATAGCCTTCGGGAATAGCGGCGACGATTTGCCAGACGCGTAGGGGAAATGAATCTTCTTTTTCAATCTTTTCTTCATGAGGTAATTTTTCAGCATAATCTGGAAAAACGCCCGAGTGAAGTCGCATTGCGCAAGAAACAAGCATCTGGCACGCGATGGGTTGCAATTACACGGGGCAGCAGTGATa > 2:20088/1‑250 (MQ=255) cccctccgggcgcgtttgctggggCGTTCCCGCCAGTTTCGCCTCATCACCGTAAGTGGTGACATAGCCTTCGGGAATAGCGGCGACGATTTGCCAGACGCGTTGGGGAAATGAATCTTCTTGTTCCATCTTTTCTTCCTGAGGTAATTTTTCATCATAATCTGGAAAAACGTCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATTTGTTGCAATTATGCGGTGCAGCAGTGATAAt < 2:162417/231‑1 (MQ=255) ggcgcggGGCGATCCCGCCAGTTTCGCCACATCACCGTAAGTGGTGACATAGCCTTCGGGAATAGCGGCGACGATTTGCCAGACGCGTTGGGGAAATGAATCTTCTTTTTCCATCTTTTCTTCCTGAGGTAATTTTTCAGCATAATCTGGAAAAACGTCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTgg > 1:227130/1‑251 (MQ=255) gggCGATCCCGCCAGTTTCGCCACATCACCGTAAGTGGTGACATAGCCTTCGGGAATAGCGGCGACGATTTGCCAGACGCGTTGGGGAAATGAATCTTCTTTTTCCATCTTTTCTTCCTGAGGTAATTTTTCAGCATAATCTGGAAAAACGTCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTtctc > 2:86953/1‑250 (MQ=255) gATCCCGCCAGTTTCGCCACATCACCGTAAGTGGTGACATAGCCTTCGGGAATAGCGGCGACGATTTGCCAGACGCGTTGGGGAAATGAATCTTCTTTTTCCATCTTTTCTTCCTGAGGTAATTTTTCAGCATAATCTGGAAAAACGTCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTTCTCAACGc > 1:181130/1‑251 (MQ=255) gtggagACATAGCCTTCGGGAATAGCGGCGACGATTTGCCAGACGCGTTGGGGAAATGAATCTTCTTTTTCCATCTTTTCTTCCTGAGGTAATTTTTCAGCATAATCTGGAAAAAAGTCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTTCTCAACGCTCTCAATGGGGGCTCTGTTGGTTCTCCCGc > 1:220168/1‑251 (MQ=255) cGGGAATAGCGGCGACGATTTGCCAGACGCGTTGGGGAAATGAATCTTCTTTTTCCATCTTTTCTTCCTGAGGTAATTTTTCAGCATAATCTGGAAAAACGTCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTTCTCAACGCTCTCAATGGGGGCTCTGTTGGTTCTCCCGCACCGCTACTCTGttt > 2:38635/1‑250 (MQ=255) gCCAGACGCGTTGGGGAAATGAATCTTCTTTTTCCATCTTTTCTTCCTGAGGTAATTTTTCAGCATAATCTGGAAAAACGTCCGAGAGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTTCTCAACGCTCTCAATGGGGGCTCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCggaagga > 1:248909/1‑250 (MQ=255) gAAATGAATCTTCTTTTTCCATCTTTTCTTCCTGAGGTAATTTTTCAGCATAATCTGGAAAAACGTCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTTCTCAACGCTCTCAATGGGGGCTCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGc > 2:78043/1‑247 (MQ=255) aaTCTTCTTTTTCCATCTTTTCTTCCTGAGGTAATTTTTCAGCATAATCTGGAAAAACGTCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTTCTCAACGCTCTCAATGGGGGCTCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGAcgcg > 1:249705/1‑251 (MQ=255) ttcttcCTGAGGTAATTTTTCAGCATAATCTGGAAAAACGTCCGCGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTTCTAACCGCTCTCAATGGGGGCTCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGCGTGTGCCGGGATGTAGCTgg > 1:32894/1‑251 (MQ=255) tcttcCTGAGGTAAGTTTTCAGCATAATTAGGCAAAACGTCCTTGTGAAGGCGCAGTGGGCAAGAAACCAGCATCTGGCACGCGAGGGGTTTCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTTCTCCACGCTCTCAATGGGGGCTCTGTTGGTTCTCGCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAATGAAGCAGCCAAGGCAGATGACGCGTGTGCCGGGATGTAGCttt < 2:140202/250‑3 (MQ=255) ttCAGCATAAGCTGGAAAAACGTCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAATGAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTTCTCAACGCTCTGAATGGGGGCTCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGCGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCAtt < 2:249705/250‑1 (MQ=255) aGCATAATCTGGAAAAACGTCCGAGTTAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACTCGATGGGTTGCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTTCTCAACGCTCTCAATGGGGGCTCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGCGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTg < 1:214592/251‑1 (MQ=255) tGGAAAAACGTCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTTCTCAACGCTCTCAATGGGGGCTCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGCGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCCCAcc > 1:58151/1‑251 (MQ=255) gAAAAACGTCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTTCTCAACGCTCTCAATGGGGGCTCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGCGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCCCACCGt < 2:135979/251‑1 (MQ=255) | CGATTAACCACCCGGTGCCAGGGTAAGGTGCTGCCTTCAGGGAGACGCTTTAACACACCGCCCACCTGGCGCGCGGCGCGGGGCGATCCCGCCAGTTTCGCCACATCACCGTAAGTGGTGACATAGCCTTCGGGAATAGCGGCGACGATTTGCCAGACGCGTTGGGGAAATGAATCTTCTTTTTCCATCTTTTCTTCCTGAGGTAATTTTTCAGCATAATCTGGAAAAACGCCCGAGTGAAGTCGCATTGCGCAAGAAACCAGCATCTGGCACGCGATGGGTTGCAATTAGCCGGGGCAGCAGTGATAATGCGCCTGCGCGTTGGTTCTCAACGCTCTCAATGGGGGCTCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGCGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCCCACCGT > NC_000913/476106‑476579 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |