Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	438,659	C→T	A507T (GCG→ACG)	dxs ←	1‑deoxy‑D‑xylulose‑5‑phosphate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	438,659	0	C	T	100.0%	76.2 / NA	24	A507T (GCG→ACG)	dxs	1‑deoxy‑D‑xylulose‑5‑phosphate synthase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (11/13);  total (11/13)

GTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATGGGTTTGAC  >  NC_000913/438426‑438895                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                             gTTCAGCACGGGTATTGGTTTACGATTGGCCTGCCGCACTTCGGTCACGCCGCTTCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGGGGTTTCACAAAACGCAGATCGTCCAGCGTGGCGTTCATCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGGACCAAAGTTAAGGCCCGTAAGTTTCTCTCCacgac                                                                                                                                                                                                                             <  2:17422/251‑1 (MQ=255) gTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCacgac                                                                                                                                                                                                                             >  1:95395/1‑251 (MQ=255)     aGCACGTGTACTGGTTGACGATGGTCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAAGTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCtt                                                                                                                                                                                                                         <  1:121191/251‑1 (MQ=255)                gggTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCtt                                                                                                                                                                                                              <  2:165868/250‑1 (MQ=255)                                    gCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGATAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTcc                                                                                                                                                                                          >  2:74073/1‑251 (MQ=255)                                                  ccgcTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCTACCAGCGTGGCGTTCAGCGATTCGGCGACTTGCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCATCGGCTTCAGTTc                                                                                                                                                                            <  2:260966/251‑1 (MQ=255)                                                              ccgccCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACcgc                                                                                                                                                                >  1:2286/1‑251 (MQ=255)                                                                            gTTTTCTTCTACTGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGTCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTGTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGt                                                                                                                                                  <  2:61948/251‑1 (MQ=255)                                                                               ttcttcTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAgc                                                                                                                                               >  2:145541/1‑251 (MQ=255)                                                                                          tGACCAGCGCTTCATGGCTGACGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGAc                                                                                                                                    >  1:224468/1‑251 (MQ=255)                                                                                                                  ccATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCg                                                                                                            <  2:97021/251‑1 (MQ=255)                                                                                                                      ttCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGtat                                                                                                        >  1:97132/1‑251 (MQ=255)                                                                                                                             agtAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCAt                                                                                                 <  2:228833/249‑1 (MQ=255)                                                                                                                                aaCGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCt                                                                                               <  1:74073/250‑1 (MQ=255)                                                                                                                                 ccGCTTCATCAAGCGGTGTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCAGCAGCGTACCAAAGTTAAGGAGCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTGCCACGCCGACCGCGTTGCCGCGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGAGAGCCGGTATAGAGCATCTgg                                                                                             <  2:257324/250‑1 (MQ=255)                                                                                                                                   gCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTCCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCg                                                                                           >  2:67447/1‑251 (MQ=255)                                                                                                                                          caAGCGGTTTCACAAAACGCATAGCGACCAGCGTGGCGATCAGCGCGACGGCGTCTTGCGCCGCGTCTGGCATCATCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCGTCACAATGCCTTTGCCAAATGGTAGTTTTTCCAGCGGCGTCAGTCCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGTCCATCGGTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTc                                                                                     <  1:83674/250‑1 (MQ=255)                                                                                                                                             gcgttttCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGttt                                                                                 <  2:2286/247‑1 (MQ=255)                                                                                                                                                                                         tCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAgcgc                                       >  2:58108/1‑249 (MQ=255)                                                                                                                                                                                                   tCGCCTCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAagagag                            <  1:185193/250‑1 (MQ=255)                                                                                                                                                                                                       cgcTTCTGGCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCa                        >  1:72637/1‑250 (MQ=255)                                                                                                                                                                                                       cgcTTCTGGCATCAGCGAACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATACCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCCCGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCCTCGTTATAGTGCTAGCCGGTATAGAGCTTCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGAACATTTCCGGTATGCAGCGCAGGTAAGAGAGCTCa                        >  2:105645/1‑250 (MQ=255)                                                                                                                                                                                                              ggCATCAGCGTACCAAAGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTAGGCAGCGCAGGTAAGAGAGATCAAAAGCAc                 <  1:77834/250‑1 (MQ=255)                                                                                                                                                                                                                            aaaGTTAAGGATCGTCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATGGGTTTGAc  >  1:60416/1‑251 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                             GTTCAGCACGGGTACTGGTTTACGATGGGCCATCAGCACTTCGTTCACGCCGCTGCCTGCGCCGCCCATAATGGCGTTTTCTTCTACGGTGACCAGCGCTTCATGGCTGGCGGCCATTTCCAGAATTAACGCTTCATCAAGCGGTTTCACAAAACGCATATCGACCAGCGTGGCGTTCAGCGATTCGGCGACTTTCGCCGCTTCTGGCATCAGCGTACCAAAGTTAAGGATCGCCAGTTTCTCGCCACGACGCTTCACAATGCCTTTGCCAATTGGTAGTTTTTCCAGCGGCGTCAGTTCCACGCCGACCGCGTTGCCACGCGGGTAGCGCACCGCTGACGGGCCATCGTTATAGTGATAGCCGGTATAGAGCATCTGGCGACATTCGTTTTCATCGCTCGGGGTCATAATGACCATTTCCGGTATGCAGCGCAGGTAAGAGAGATCAAAAGCACCCTGATGGGTTTGAC  >  NC_000913/438426‑438895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑