| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 331,446 | C→T | H662Y (CAT→TAT) | betT → | choline:H(+) symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 331,446 | 0 | C | T | 95.2% | 61.7 / NA | 21 | H662Y (CAT→TAT) | betT | choline:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (8/12); minor base G (0/1); total (8/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGTTGGGTCATCTGGATTTGTTGGTGCATATGGGCGAAGAGCAAAACTTTGTCTATCAGATTTGGCCGCAGCAATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGCGAATGTTCAATAAGTTT > NC_000913/331203‑331683 | cagTTGGGTCATCTGGATTTGTTGGTGCATATGGGCGAAGAGCAAAACTTTGTCTATCAGATTTGGCCGCAGCAATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCATGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCa < 2:47530/251‑1 (MQ=255) gttgGTGCCTATGGGCGAAGAGCAAAACTTTGGCTATCAGATTTGGCCGCAGCAATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCGACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAAGCGCCGGGCCATa < 2:225970/251‑1 (MQ=255) gttgGTGCATATGGGCGAAGAGCAAAACTTTGTCTATCAGATTTGGCCGCAGCAATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAAGCGCCGGGCCAt > 1:6728/1‑250 (MQ=255) gAAGAGCAAAACTTTGTCTATCAACTTTGGCCGCAGCAATCTTCGGTGACGGAATTTACCTACCGCGCCCGCCGCGGTACATCGACCTACTACCGGCTGGAAAACTTCCTGTTAGACGGCCGCCCGGGCAACGACCTGATGGAATACAGCAAGGTGCAGGTGATCACCGATCTTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCCTCGTGAAGCGCCTGGCCATAGCGTGATggtaccgg > 2:21907/1‑243 (MQ=255) aaaaCTTTGTCTATCAGATTTGGCCGCAGCAATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGCCGCGTgc > 2:71130/1‑250 (MQ=255) ttGTCTATCAGATTTGGCCGCAGCAATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGt < 1:68150/249‑1 (MQ=255) aattGGCCGCAGCAATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGCGCAGGGGATCACCGATATTCTTGACAAGTACGAGCGGCACCTTAACTTTATTTATCTCAATCGTGTAGCGCCGGGCCAAAGCGTGATGTTCCCGAACGCGTGATTGTTATTGCATAAAAc > 2:231947/3‑251 (MQ=255) tGGCCGCAGCAATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACcg < 1:238362/250‑1 (MQ=255) caATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTca < 2:178591/251‑2 (MQ=255) gggCTTTACCTACCGCGCACGCAGAGGTCAATCGACCTACTACCGGCTGGAACCCTTCCTGTTCGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAACGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGCCGCGTGCTTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGt > 2:163540/1‑251 (MQ=255) gCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGttt > 1:94617/1‑251 (MQ=255) cctaccGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCTTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATAGGGCGCTGTGTCTCCTa < 2:230130/251‑1 (MQ=255) gcaGCGGTAAATCGACCTACTACCGGCTGGAAGCCTTCCTGTTAGAAGGCAGCCAGGGCATCGACCTGATGGACTACAGCAAAGTGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTAGCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGGTCCCGGACGCGTGATTGTTATGGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCCTGATACg < 2:35728/251‑1 (MQ=255) acCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAATCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGcc < 2:94617/251‑1 (MQ=255) aGAAGGCAGCCAGGGCGACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTAc > 2:235809/1‑251 (MQ=255) cAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCGCCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATAGCTATACGGTTAAGCCCTTAGTATCTATTGATGATTTCCAGaca < 2:28836/251‑1 (MQ=255) gggCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGAGGATTACCAGACAACAGat < 1:71130/251‑1 (MQ=255) agagCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTcc > 1:171593/1‑155 (MQ=255) agagCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTTATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTcc < 2:171593/155‑1 (MQ=255) gACCAGGACGAGCGGCACCTTAACTTTATTGATCCCCATCGTGAAGCGCCGGGCCATAGCGGGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTACGACTTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGc < 2:185399/251‑1 (MQ=255) ccTTAACGTTATTTATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTGAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGCGAATGTTCAATAAGttt < 1:163540/251‑1 (MQ=255) | CAGTTGGGTCATCTGGATTTGTTGGTGCATATGGGCGAAGAGCAAAACTTTGTCTATCAGATTTGGCCGCAGCAATATTCGGTGCCGGGCTTTACCTACCGCGCACGCAGCGGTAAATCGACCTACTACCGGCTGGAAACCTTCCTGTTAGAAGGCAGCCAGGGCAACGACCTGATGGACTACAGCAAAGAGCAGGTGATCACCGATATTCTTGACCAGTACGAGCGGCACCTTAACTTTATTCATCTCCATCGTGAAGCGCCGGGCCATAGCGTGATGTTCCCGGACGCGTGATTGTTATTGCATAAAACCGCGCCATGTCTGCATATGGCGCTGTTTCTCCTACCTCTTGATACGTTATATCTATACGGTTAAGCCCTTAGTATCTATTGATGATTACCAGACAACAGATAATAAAAAAGAAAAGAACTATTGCAGCCCAAAACCTACATTTGGGCTGTTGCGAATGTTCAATAAGTTT > NC_000913/331203‑331683 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |