| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 303,911 | C→T | G91E (GGA→GAA) | ykgJ ← | putative metal‑chelating domain‑containing protein YkgJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 303,911 | 0 | C | T | 95.7% | 65.1 / ‑6.2 | 23 | G91E (GGA→GAA) | ykgJ | putative metal‑chelating domain‑containing protein YkgJ |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (14/8); total (14/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 | |||||||||||
GCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATAGAAGAAGTATCGGGTTTTGTTACCCCTGAAAAACGAAGCCCCGCTATTATCGCTGGCGGGGCAGTGCAATTAATTATTGTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTCCGTTCTCACCAGACATGGCGAATTCTCTGCATGTGGACGATCGATTTTTATATATCGTGCAGCAGGCATTTTTGCCCGGGGTTCCTGCAAGGGCAATACATCGGGGGTTTTTCTGATTGGTACCGCTCATG‑CATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAAC > NC_000913/303664‑304145 | gCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATAGAAGAAGTATCGGGTTTTGTTACCCCTGAAAAACGAAGCCCCGCTATTATCGCTGGCGGGGCAGTGCAATTAATTATTGTATGTTTATAACGGTGTCATCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTTCGt < 1:165635/251‑1 (MQ=255) taGATAGTCAGTGAGAATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGAAAATAGAAGAAGTATCGGGTTTTGTTACCCCTGAAAAACGAAGCCCCGCTATTATCGCTGGAGGGGCAGGGCAATTAATTATTGTATGTTTATAACGGTGTCAGCCCGAATTTAACCCTTGCACGATTGCAATCCTCATTGACGACTTCGTTCTCACCAGACATGGCgg > 2:60518/2‑250 (MQ=255) atagtaagtgaatcaatCGCGCTACTTCAGGATGATGTAGAACCGAAGAACGCTACAGAAGAGAGGGATTGTTGCTGGCAAATAGAAGACGTATCGGGATTTGTTACCCCTGAAAAACGAAGCCCCGCTATTATAGCGTGCGGGGCAGTGCAATTAATTCTTGTGTGTTTATAACGGTGTCAGCCCGAATTTAGCCCGTGCACGTCTGCAAGCCTCATTGACGACTTCGTTCTCCCCCGACATGGCCAAtt > 2:248627/16‑251 (MQ=255) aTAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATAGAAGAAGTATCGGGTTTTGTTACCCCTGAAAAACGAAGCCCCGCTATTATCGCTGGCGGGGCAGTGCAATTAATTATTGTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTTCGTTCTCACCAGACATGGCGAAtt > 2:116255/1‑251 (MQ=255) cAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATAGAAGAAGTATCGGGTTTTGTTACCCCTGAAAAACGAAGCCCCGCTATTATCGCTGGCGGGGCAGTGCAATTAATTATTGTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTTCGTTCTCACCAGACATGGCGAATTctct < 1:116255/250‑1 (MQ=255) tataTCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATAGAAGCAGTATCGGGTTTTGTTACCCCTGAAAAACGAAGCCCCGCTATTATCGCTGGCGGGGCAGTGCAATTAATTATTGTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTTCGTTCTCACCAGACCTGGCGAATTCTCTGCAtgtg < 2:233536/250‑1 (MQ=255) cgcTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATAGAAGAAGTATCGGGTTTTGTTACCCCTGAAAAACGAAGCCCCGCTAT‑ATCGCTGGCGGGGCAGTGCAATTAATTATTGTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTTCGTTCTCACCAGACATGGCGAATTCTCTGCATGTGGAcgatcga < 1:84520/251‑1 (MQ=255) cTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATAGAAGAAGTATCGGGTTTTGTTACCCCTGAAAAACGAAGCCCCGCTATTATCGCTGGCGGGGCAGTGCAATTAATTCTTGTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTTCGTTCTCACCAGACATGGCGAATTCTCTGAATGTGGAcgatcgat > 1:30037/1‑251 (MQ=255) tACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGCGAGGCATTGTTGCTGGCAACTAGAAGACGTATCGGGTTTTGTTACCCCTGAAAAACGAAGCCCCGCTATTATCGCTGGCGGGGCAGTGCCATTAATTATTGTATGTTTATAAAGGTGTCAGCCCGTATTTAGCCCTTGCCCGATTGCAAGCCTCATTGACGCCTTCGTTCTCCCCAGACATGGCGCATTCTCTGCATGTGGAccatcgctt > 2:137156/1‑248 (MQ=255) aagTATCGGGTTTTGTTACCCCTGAAAAACGAAGCCCCGCTATTATCGCTGGCGGGGCAGAGCAATTAATTATTGTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTTCGTTTTCACCAGACATGGCGAATTCTCTGCATGTGGACGATCGATTTTTATATATCGTGCAGCAGGCATTTTTGCCCGGGGTTCCTGCAAGGGCAATACATCGGGGGttttt > 1:145620/1‑251 (MQ=255) cGGGTTTTGATATCCCTGAAAAACGAAGCCACGCTATTATCGCTGGCGGGGCAGTGCAATTAATTATTGTATGTTTCTAACGGTGTCAGACCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTTCGTTCTCACCAGACCTGGCGAATTCTCTGCATGTGGCCGATCGCTTTTTATATATCGTGCAGCAGGCATTTTTGCCCGGGGTTCCTGCAAGGGCAATACATCGGGGGTTTTTCTGAtt > 2:119914/1‑251 (MQ=255) aCCCCTGAAAAACGAAGCCCCGCTATTATCGCTGGCGGGGCAGTGCAATTAATTATTGTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTTCGTTCTCACCAGACATGGCGAATTCTCTGCATGTGGACGATCGATTTTTATATATCGTGCAGCAGGCATTTTTGCCCGGGGTTCCTGCAAGGGCAATACATCGGGGGGTTTTCTGATTGGTACCGCTc < 2:124852/250‑1 (MQ=255) aGCCCCGCTATTATCGCTGGCGGGGCAGTGCAATTAATTATTGTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTTCGTGCTCACCAGACATGGCGAATTCTCTGCATGTGGACGATCGATTTTTATATATCGTGCAGCAGGCATTTTTGCCCGGGGTTCCTGCAAGGGCAATACAGCGGGGGTTTTTCTGATTGGTACCGCTCATG‑CATCGGTGAAAAg < 1:93254/251‑1 (MQ=255) gCTATTATCGCTGGCGGGGCCGTGCAATTAATTATTGTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTTCGTTCTCACCAGACATGGCGAATTCTCTGCCTGTGGACGATCGATTTTTATATATCGTGCAGCAGGCATTTTTGCCCGGGGTTCCTGCAAGGGCAATACATCGGGGGTTTTTCTGATTGGTACCGCTCATG‑CATCGGTGGAAAGGGGatt > 1:88619/1‑250 (MQ=255) gTTTATAACGGAGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTTCGTTCTCACCAGACATGGCGAATTCTCTGCATGTGGGCGATCGATTTTTATATATCGTGCAGCAGGCATTTTTGCCCGGGGTTCCTGCAATGGCAATAAATCGGGGGTTTTTCTGATTGGTACCGCTCATG‑CATAGGTGAAAAGGGGATATTTGCTCAGTGAGCCTGGCGGGAATCGTACCGCCAGCAtg > 2:22560/1‑250 (MQ=255) tCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGCCTTCGTTCTCACCAGACATGGCGAATTCTCTGCATGTGGACGATCGATTTTTATATATCGTGCAGCAGGCATTTTTGCCCGGGGTTCCTGCAAGGGCAATACATCGGGGGTTTTTCTGATTGGTACCGCTCATG‑CATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGcc > 2:115387/1‑251 (MQ=255) cccGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTTCGTTCTCACCAGACATGGCGAATTCTCTGCATGTGGACGATCGATTTTTATATATCGTGCAGCAGGCATTTTTGCCCGGGGTTCCTGCAAGGGCAATACATCGGGGGTTTTTCTGATTGGTACCGCTCATG‑CATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAgg > 2:54442/1‑250 (MQ=255) gCCCTTGCACGATTGCAAGCCTCATTGACGACTTCGTTCTCACCAGACATGGCGAATTCTCTGCATGTGGACGATCGATTTTTATATATCGTGCAGCAGGCATTTTTGCCCGGGGTTCCTGCAAGGGCAATACATCGGGGGTTTTTCTGATTGGTACCGCTCATG‑CATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCCGCATCGTCGGCTTCGGCCCAGTAAAAAgaga > 1:158866/1‑250 (MQ=255) gtgcacgatggcaaccctgttggccgacTCCTTTCTCACAAGACATGGCGATTTCTCTGCATGTGTATGACCGATTTTTATATATCGTGCAGCAGGCTTTTTTGCCCGGGTTTCCTGAAAGGGCAATACATCGGGGGTTTTTCGGATTGTTACCGCTCATG‑CACCGTTGAAAGGGGGATTTTTGTCCAGGGAGCCGGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCgg < 2:88619/227‑1 (MQ=255) cACGATTGCAAGCCGCATTGGCGACTTAGTTCTCCACAGAAAGGGCAAAGTCTATGCATGGGGGCGAGCTTTTTTGATATATCGTGCAGCAGGCATTTTTGCCCGGGTTTCCTGCAGGGGCAATACATGTGGGTTTTTTCTGATGGGTACCTCGC‑TGACATCGGTGAAAAGGGGATGTTTGGTCAGTGATCCGTGTGTGAATAGTACCGCCAGCATCGTCGGTTTCGGCCCAGTAAAAAGAGACGCGGaaa < 2:126767/251‑1 (MQ=255) cAAGCCTCATGGACGACTTCGTCCTCACAAGCCATGGCGATTTCTCGGCTTGTGGACGATCGATTTTTATATAGGGGGCAGCAGGCTTTTTTGCCCGGGGTCCCTGAAAGGGCAATACATCGGGGGTTTTTTTGATTGGTCCCGCTCATG‑CATCGGTGAAAAGGGGATATTTGTTCAGGGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGcaca < 1:54442/251‑1 (MQ=255) aaGCCTCATTGACGACTTCGTTCTCACCAGACATGGCGAATTCTCTGCATGTGGACGATCGATTTTTATATATCGTGCAGCAGGCATTTTTGCCAGGGGTTCCTGCAAGGGCAATACATCGGGGGTTTTTCTGATTGGTACCGCTCATG‑CATCGGTGAACAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGAATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGcaca > 1:160346/1‑250 (MQ=255) aGCCTCATTGACGACTTCGATCTCACCAGACATGGCGAATTCTCTGCATGTGGACGATCGATTTTTCTATATCGTGCAGCAGGCATTTTTGCCCGGGGTTCCTGCAAGGGCAATACATCGGGGGTTTTTCTGATTGGTACCGCTCATG‑CATCGGTGAACAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGGAAAAAGAGAAGCGGAAAAATGcacacc > 2:236612/1‑249 (MQ=255) | GCTTTTTATATTCTGATGCAGATAGTCAGTGAGTATATCGCGCTACTTCAGGATGATGTAGATCCGAAGAACGCTACAGAAGAGAGGCATTGTTGCTGGCAAATAGAAGAAGTATCGGGTTTTGTTACCCCTGAAAAACGAAGCCCCGCTATTATCGCTGGCGGGGCAGTGCAATTAATTATTGTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTCCGTTCTCACCAGACATGGCGAATTCTCTGCATGTGGACGATCGATTTTTATATATCGTGCAGCAGGCATTTTTGCCCGGGGTTCCTGCAAGGGCAATACATCGGGGGTTTTTCTGATTGGTACCGCTCATG‑CATCGGTGAAAAGGGGATATTTGTTCAGTGAGCCTGGCGGGAATAGTACCGCCAGCATCGTCGGCTTCGGCCCAGTAAAAAGAGACGCGGAAAAATGCACAAC > NC_000913/303664‑304145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |