| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 13 (0.520) | 13/488 | 0.6 | 61.9% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3727274 = | 8 (0.320) | coding (88/438 nt) | yiaA | PF05360 family inner membrane protein YiaA | |||||
AAGCCAGTCCATAAAAACCTTTTTCGCTGAGTAATAATGTCGCATTCCACAGACCTACCATCAGTAATGCAACAGAGATAATAAAGACAGTCAGGCAGGTCATATAATAAATGGAAGTGGTCGGTATGCCTTCATACTTGTCCCGAACGGTCTTTTGATAAGACGCCGCAGAAAACAGTCCTAATACCAGTACGGCAAAATAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTC > NC_000913/3727031‑3727478 | aaGCCAGTCCATAAAAACCTTTTTCGCTGAGTAATAATGTCGCATTCCACAGACCTACCATCAGTAATGCAACAGAGATAATAAAGACAGTCAGGCAGGTCATATAATAAATGGAAGTGGTCGGTATGCCTTCATACTTGTCCCGAACGGTCTTTTGATAAGACGCCGCAGAAAACAGTCCTAATACCAGTACGGCAAAATAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAAggaa > 1:182756‑M2/1‑247 (MQ=255) gaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGATAgg < 1:46489‑M2/12‑1 (MQ=255) cATAAAAACCTTTTTCGCTGAGTAATAATGTCGCATTCCACAGACCTACCATCAGTAATGCAACAGAGATAATAAAGACAGTCAGGCAGGTCATATAATAAATGGAAGTGGTCGGTATGCCTTCATACTTGTCCCGAACGGTCTTTTGATAAGACGCCGCAGAAAACAGTCCTACTACCAGTACGGCAAAATAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAACAGATAGGTAACg > 2:186251/1‑251 (MQ=255) cgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGATAGGTAACGATACCACCAACGAGAGc > 1:48660‑M2/218‑251 (MQ=255) gAGTAATAATGTCGCATTCCACAGACCTACCATCAGTAATGCAACAGAGATAATAAAGACAGTCAGGCAGGTCATATAATAAATGGAAGTGGTCGGTATGCCTTCATACTTGTCCCGAACGGTCTTTTGATAAGACGCCGCAGAAAACAGTCCTAATACCAGTACGGCAAAATAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAAggaaggtgcgaacaagtccctgatatgagatc > 1:196781‑M2/1‑219 (MQ=255) gctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGacac > 2:202719‑M2/205‑250 (MQ=255) ctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGAcaca > 1:54791‑M2/204‑250 (MQ=255) gCATTCCACAGACCTACCATCAGTAATGCAACAGAGATAATAAAGACAGTCAGGCAGGTCATATAATAAATGGAAGTGGTCGGTATGCCTTCATACTTGTCCCGAACGGTCTTTTGATAAGACGCCGCAGAAAACAGTCCTAATACCAGTACGGCAAAATAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAAt < 1:5074/251‑1 (MQ=255) aCCATCAGTAATGCAACAGAGATAATAAAGACAGTCAGGCAGGTCATATAATAAATGGAAGTGGTCGGTATGCCTTCATACTTGTCCCGAACGGTCTTTTGATAAGACGCCGCAGAAAACAGTCCTAATACCAGTACGGCAAAATAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGt < 1:190004/249‑1 (MQ=255) gcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAAt < 1:138249‑M2/66‑1 (MQ=255) ggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAg < 1:40430‑M2/68‑1 (MQ=255) aaacAGAGATAATAAAGACAGTCAGGCAGGTCATAGAATAAATGGAAGTGGTCGGTATGCCTTCATACTTGTCCCGAACGGTCTGTTTATAAGTCGCCGCAGAAAGCAGTCCTAATTCCATTACGGCAAAATAATAGCCTTTTTCATTTAACTGCATCTTTGCATTCCATAGCCCTAAggagggtgcgaacaagtcgctgatatgagatcaggtttggcatctggagtcatcgaatagggttcttcatgag > 2:239507‑M2/2‑178 (MQ=255) gggagagatcgcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatgtccccgcttattcgcaccttccCTAACATATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTTAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCa < 2:122566‑M2/87‑1 (MQ=255) gTCAGGCAGGTCATATAATAAATGGAAGTGGTCGGTATGCCTTCATACTTGTCCCGAACGGTCTTTTGATACGCCGCAGCAGAAAACAGCCCTAATACCAGTACGGCAACATAATATCCTTTTTCCTTTCACTGCCTCTATGCATTCCATAGCCCTAAggcaggagcgatccagtccctgctatgagatcatgtttgtcatctggagccatagcacagggttcatcatgagtcatcaacttaccttcgccg < 1:259620‑M2/251‑94 (MQ=255) gAAGTGGTCGGTATGCCTTCATACTTGTCCCGCACTGTCTTTTGATAAGACGCCGCAGAAAACAGTCCTAATACCAGTACTGCAAAATAATATCCTTTTTCATGTAACGTCGTCTCTGCATTCCATAGCCCTAAggaaggtgagaacaaggccctgatatgagatcttgtgtgtcatcttgagccatagaacagggttcatcatgagtcagcaacttaccttcgccgacagtgaagtcagtattaagcgcc > 2:103049‑M2/1‑134 (MQ=255) tCATACTTGTCCCGAACGGTCTTTTGATAAGACGCCGCAGAAAACAGTCCTAATACCAGTACGGCAAAATAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagccgtaagcgccgtcagaccagaaaag < 1:218268‑M2/248‑133 (MQ=255) cATACTTGTCCCGAACGGTCTTTTGATAAGACGCCGCAGAAAACAGTCCTAATACCAGTACGGCAAAATAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGcc < 2:88610/251‑1 (MQ=255) attcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACg < 2:220087‑M2/154‑1 (MQ=255) aCGGTCTTTTGATAAGACGCCGCAGAAAACAGTCCTAATACCAGTACGGCAAAATAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACg > 1:48054/1‑251 (MQ=255) ggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTTATATTTTGTTGTCCATCACAGTATGCCTTTCATTCCTGAATTTGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTg < 2:29905‑M2/160‑1 (MQ=255) aaaaaatcggcgcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGa < 2:54791‑M2/174‑1 (MQ=255) cAGAAAACAGTCCTAATACCAGTACGGCAAAATAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGACTAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAAAAAACGCATTTGACCAAACACGCAGAc > 1:107787/1‑250 (MQ=255) aGAAAACAGTCCTAATACCAGTACGGCAAAATAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaa > 1:24527‑M2/1‑78 (MQ=255) cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACaaaaa > 1:70789‑M2/71‑250 (MQ=255) catgaagaaaggaaatgactgagtcagccgggaagaaattccccgcttattcgcaccttccCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGTCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGATCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATggg < 1:123841‑M2/190‑1 (MQ=255) aaTACCAGTACGGCAAAATAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAAggaaggtgcgaacaagtccctgctatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtgga < 1:132924‑M2/249‑185 (MQ=255) gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcacaccttccCTAACAGATAGGAAACGATACAACCAAAGAGAGCTCTCACTGACACAATACTAAAGTCCGGTGAACAGGTTGATATTTAGTTGTCAATCACAGTATTACTTTCATTCCTGAATATGTAAGAGCTTTATTTTGCTCATGCAGCGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGAt > 1:249552‑M2/56‑247 (MQ=255) tACGGCAAAATAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATc > 2:27352/1‑250 (MQ=255) aaaTAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTc < 1:63344/251‑1 (MQ=255) | AAGCCAGTCCATAAAAACCTTTTTCGCTGAGTAATAATGTCGCATTCCACAGACCTACCATCAGTAATGCAACAGAGATAATAAAGACAGTCAGGCAGGTCATATAATAAATGGAAGTGGTCGGTATGCCTTCATACTTGTCCCGAACGGTCTTTTGATAAGACGCCGCAGAAAACAGTCCTAATACCAGTACGGCAAAATAATATCCTTTTTCATTTAACTGCATCTCTGCATTCCATAGCCCTAACAGATAGGTAACGATACCACCAACGAGAGCTATCCATGACACAATACTAAAGGCCGGTGAATAGGTTGATATTTTGTTGTCCATCACAGTATTCCTTTCATTCCTGAATATGTAAGAGCTTTATGTTGCTCATGCCGAGCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTC > NC_000913/3727031‑3727478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |