New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1978503 =	NA (NA)	22 (0.880)	22/488	0.2	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 2168156	0 (0.000)					coding (151/318 nt)	yegR	uncharacterized protein YegR

TCACTTATCGGCATCGTGCTCCCACAGGTTCCGGCTACGCACAGCCAGAACGCGCATATTTGACGCTTACCAAAAAATATTCTCACTCTCCACATTTGAATGTCAGACGAGCGACACCATGTAATCCTACACCTTCTGTCTTCAGCTCAACTATTTGCATTTTTTTGCCCTGAGTAACACAGAAATGAGTTGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCGGCTTCGGTGTAGTATTGGTTATCGAGTTTACGCTGAATATTACTTTTATATGCAAGACCAAATTTACCGATACTTGTCTCATCATTATGCACAGCACAACCAGACATAATAAAAATACTAATTAATGATATAGCAGCTATCTTTTTCATCTCACCTTCCCCCATTAAATACCAACGACACTCTCTAGTGTTTAAATATAATAATGGCATGATTATTATAATTGAAT  >  NC_000913/2167907‑2168383                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                    tCACTTATCGGCATCGTTCTCCCACAGGTTCCGGCTACGCACAGCCAGAACGCGCATATTTGACGCTTACCAAAAAATATTCTCACTCTCCACATTTGAATGTCAGACGAGCGACACCATGTAATCCTACACCGTCTGTCTTCAGCGCAACTATTTGCATTTTTTTGCCCTGAGTAACACAGAAATGAGTTGCATCATTTTTTACTATATGGTCGGCACCAGATATTCTACCCCTGGCTAAAGAAgcttc                                                                                                                                                                                                                                     <  2:166958/250‑1 (MQ=255)            cATCGTGCTCCCACAGGTTCCGGCTACGCACAGCCAGAACGCGCATATTTGACGCTTACCAAAAAATATTCTCACTCTCCACATTTGAATGTCAGACGAGCGACACCATGTAATCCTACACCTTCTGTCTTCAGCTCAACTATTTGCATTTTTTTGCCCTGAGTAACACAGAAATGAGTTGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactcc                                                                                                                                                                                                                         >  1:115024‑M2/1‑239 (MQ=255)                          aGGTTCCGGCTACGCACAGCCAGAACGCGCATATTTGACGCTTACCAAAAAATATTCTCACTCTCCACATTTGAATGTCAGACGAGCGACACCATGTAATCCTACACCTTCTGTCTTCAGCTCAACTATTTGCATTTTTTTGCCCTGAGTAACACAGAAATGAGTTGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTGCggtaatgactccaacttattgatagt                                                                                                                                                                                                           >  2:32563‑M2/1‑225 (MQ=255)                             ttCCGGCTACGCACAGCCAGAACGCGCATATTTGACGCTTACCAAAAAATATTCTCACTCTCCACATTTGAATGTCAGACGAGCGACACCATGTAATCCTACACCTTCTGTCTTCAGCTCAACTATTTGCATTTTTTTGCCCTGAGTAACACAGAAATGAGTTGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactccaacttattgatagtgtt                                                                                                                                                                                                        <  1:32330‑M2/251‑30 (MQ=255)                                                             tGACGCTTACCAAAAAATATTCTCACTCTCCACATTTGAATGTCAGACGAGCGACACCATGTAATCCTACACCTTCTGTCTTCAGCTCAACTATTTGCATTTTTTTGCCCTGAGTAACACAGAAATGAGTTGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtc                                                                                                                                                                         <  2:21834‑M2/250‑61 (MQ=255)                                                                          aaaaTATTCTCCCTCTCCACATTTGAATGTCAGACGAGCGACACCATGTAATCCTACACCTTCTGTCTTCAGCTCAACTATTTGCATTTTTTTGCCCTGAGTAACACAGAAATGAGTTGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccg                                                                                                                                                           <  2:27443‑M2/251‑75 (MQ=255)                                                                                   tcACTCTCCACATTTGAATGTCAGACGAGCGACACCATGTAATCCTACACCTTCTGTCTTCAGCTCAACTATTTGCATTTTTTTGCCCTGAGTAACACAGAAATGAGTTGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                                                                                                                     <  1:184072‑M2/248‑81 (MQ=255)                                                                                           cacaTTTGAATGTCAGACGAGCGACACCATGTAATCCTACACCTTCTGTCTTCAGCTCAACTATTTGCATTTTTTTGCCCTGAGTAACACAGAAATGAGTTGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagc                                                                                                                                          <  2:80080‑M2/251‑92 (MQ=255)                                                                                               tttGAATGTCAGACGAGCGACACCATGTAATCCTACACCAGCTGTCTTCAGCTCAACTATTTGCATTTTTTTGCCCTGAGTAACACAGAAATGAGTTGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg                                                                                                                                                     >  2:20084‑M2/1‑156 (MQ=255)                                                                                                              aGCGACACCATGTAATCCTACACCTTCTGTCTTCAGCTCAACTATTTGCATTTTTTTGCCCTGAGTAACACAGAAATGAGTTGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtg                                                                                                                       <  1:68464‑M2/251‑111 (MQ=255)                                                                                                                                 acacCTTCTGTCTTCAGCTCAACTATTTGCATTTTTTTGCCCTGAGTAACACAGAAATGAGTTGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagat                                                                                                     >  2:184072‑M2/1‑122 (MQ=255)                                                                                                                                                         aTTTGCATTTTTTTGCCCTGAGTAACACAGAAATGAGTTGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccttgccaggtgctgcctcagattcaggttatgccgctcaattcgctg                                                                            >  1:21834‑M2/1‑98 (MQ=255)                                                                                                                                                                   ttttGCCCTGAGTAAACCATAAATGAGTTGCATCATTTTTTACTATATGTTCTGCGCCAGATATTCTACCCCTGGCTAAAGAAGCTTCtgtaatgactccaacttattgagagtgttttatgttcatataatgcccgatgtctttgtcatgcagctcctccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgcttcctcagattcaggttatgccgctcaattcgcttcgtatatcg                                                                   >  2:234390‑M2/1‑88 (MQ=255)                                                                                                                                                                                             gTTGCATGATTTTTTGCTAAATTTTCAGAACAAGATATTCTACACCTGGCTAAAGAAGATTCggaaatgactacaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgctggctgattaagtgcagctatcaatt                                        <  2:28844‑M2/251‑190 (MQ=255)                                                                                                                                                                                              ttGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgtctttgtcatgcagctccac                                                                                                                                                             >  2:241211‑M2/1‑61 (MQ=255)                                                                                                                                                                                              ttGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgaatccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                                                                                                                             <  1:241211‑M2/133‑73 (MQ=255)                                                                                                                                                                                                       tttttACTATGTTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactcaaacttattgctagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattaaggttatgccgctcaattagctgcgtatatcgcttgctgcttatgtgcagctttcccttcaggcgggat                              <  2:220240‑M2/251‑200 (MQ=255)                                                                                                                                                                                                           tACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattca                           >  1:27443‑M2/1‑48 (MQ=255)                                                                                                                                                                                                             cTATATTTTCTGAACAAGCTATTCTACCCCTGGCTAAAGCAGCTTCggtaatgactccaacttattgacagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgctgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcctac                        <  2:26566‑M2/251‑206 (MQ=255)                                                                                                                                                                                                                tatTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactacaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattccgtgcagctttcccttcaggcgggtttcatatagc                     <  2:34260‑M2/251‑209 (MQ=255)                                                                                                                                                                                                                 atTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcg                    <  1:68131‑M2/251‑210 (MQ=255)                                                                                                                                                                                                                          aCCAGATATTCTACCCCTGGCTAAAGAAGCTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcgtccagccat           >  1:56775‑M2/1‑33 (MQ=255)                                                                                                                                                                                                                                    cTACCCCTGGCTAAAGAAGCTTCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatcc  <  1:137821‑M2/250‑228 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                    TCACTTATCGGCATCGTGCTCCCACAGGTTCCGGCTACGCACAGCCAGAACGCGCATATTTGACGCTTACCAAAAAATATTCTCACTCTCCACATTTGAATGTCAGACGAGCGACACCATGTAATCCTACACCTTCTGTCTTCAGCTCAACTATTTGCATTTTTTTGCCCTGAGTAACACAGAAATGAGTTGCATCATTTTTTACTATATTTTCTGCACCAGATATTCTACCCCTGGCTAAAGAAGCTTCGGCTTCGGTGTAGTATTGGTTATCGAGTTTACGCTGAATATTACTTTTATATGCAAGACCAAATTTACCGATACTTGTCTCATCATTATGCACAGCACAACCAGACATAATAAAAATACTAATTAATGATATAGCAGCTATCTTTTTCATCTCACCTTCCCCCATTAAATACCAACGACACTCTCTAGTGTTTAAATATAATAATGGCATGATTATTATAATTGAAT  >  NC_000913/2167907‑2168383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.