| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,622,250 | 0 | A | G | 36.0% | 77.1 / 13.2 | 51 | E161G (GAG→GGG) | yjjJ | toxin YjjJ |
| Reads supporting (aligned to +/- strand): ref base A (4/28); new base G (18/0); total (23/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.05e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTGTTGGTG‑AAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGTGACCTGCTAATT > NC_000913/4622011‑4622497 | gtgCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGGCGGGGGGGGGGAtttat > 1:444228/1‑248 (MQ=255) gCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGTAGGGGAATTATCAg < 2:670440/251‑1 (MQ=255) gCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTGGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCTGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATTATATACGTCTCGGTCAGGAAGAAGATGTGCTTTACTCGCTGACCGTATTTATCGGTGAATATACTGGCTGTTGGTGGGTTGGGGAGGGGAAGTATCa < 2:348261/250‑1 (MQ=255) ccGCAGGGAAGTTGTCTGGTTACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGACGATGTGCTCTACGCCCTGACCGTATTTAACGGAGAATATACTGGCGGTGGGTTGGTTGGGGTGGGGAGTTATAAGGGATg > 2:519566/1‑251 (MQ=255) gCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGGTTGTCGGGGGGGGGGAtttttcaggatgtt > 1:120129/1‑239 (MQ=255) aaGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTGTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTTCTCTACGCCCTGACCGTATTTAACGGTGAATATTCTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGTA‑TTACtc < 2:42471/251‑2 (MQ=255) gTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGcaca < 1:513581/250‑1 (MQ=255) ccggTAACAGGCGGAGATGGCGTCGAACAGTGGTTTGATGGTTTGCCCTGGTAGTTGACCGATATCCGAACGTAGGGCTTGTTAGGGGGGGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTGTGGCAGGAAGAAGATGTGCGCTGCGGCCGGACCGTAGTTAACGGTGAAGATACTGGCGGTTGGTTGGGCGGGGAGGGGAATTATCAGCGATGGA‑TTTCTGCacaac < 2:329528/248‑1 (MQ=255) gggaaCAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGGGAATATACTGGCGGTTGGTGGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCacaac < 2:644905/245‑1 (MQ=255) ggTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTGTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACAcc < 2:429188/251‑1 (MQ=255) aCAGGCGCAGATGGTGGCGAACAGTGGTTTGGTGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGc < 2:653167/251‑1 (MQ=255) aGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTTGTCGGGGAGGGGGGTTATCAGCGATGGG‑TTACTTCCCAACACCCTGCgg > 1:608646/1‑251 (MQ=255) gcgcAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGGCGGGGGGGGGGATTTTCAGCGATGGA‑TTACTGCacaaacacctgcggg > 1:322559/1‑239 (MQ=255) cAGATGGCGACGAACAGTGGGTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGGCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGAGGGA‑TTACTGCGCAACGCCCTGCGGAAA‑tt < 2:131903/251‑1 (MQ=255) aGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGAGCGTATTTAACGGTGAATATACTGGCGGGTGGGTGGTCGGGGAGGGGAATGATCAGCGATGGA‑TTACTGCacaaca < 2:414459/237‑1 (MQ=255) aGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGGTGGGCGGGGGGGGGGGTTATCAGCGATGGA‑TTACTGCacaacaagatcggaaaagg > 1:414459/1‑237 (MQ=255) gATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTTGGCGGGGGGGGGGATTTTTTGCGAGGGA‑TTACTTCacaaacccccgcggagattac > 2:101780/1‑234 (MQ=255) ggCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGGCCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCctct < 2:395081/251‑1 (MQ=255) ggCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTTGGGGGGGGGAAATATTAACGATGGA‑TTACTGCACAAAACCCTGCGGAAA‑TTTctct > 1:513789/1‑251 (MQ=255) gTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGGTGGGCGGGGGGGGGGAATATCAGCGAAGGG‑GTATTGCACAACCACCTTCGGGAA‑TACTCCTGGGTCAAAAAATCAccccatac > 2:49756/1‑246 (MQ=255) tATTTGACCGATCTCCGACCGCAGGGCTTTTTAGAGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGGTGGTTGTGCGGGGGGGGGTATTTTCTACGATGGAGTTA‑TGCCCCACACCCTGCCGAAA‑ATACTCTGGATCAAAAAATCAcccccttccacacaccggg > 2:542166/1‑235 (MQ=255) cGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGc < 1:4608/251‑1 (MQ=255) cAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGCCCGTATTTAACGGTGAATATACTGGCGGCTGGTTGGGCGGGGGGGGGAATTATCCGCGATGGG‑TTTCTGCCCAAAACCCTGCGGGAA‑ATCCTCTTGATCAAAAACTCACCCACTACCAAAAGCCTGCAAGTGGTGCAATGGCAgggg > 1:289928/1‑248 (MQ=255) cAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGGTGGTTGGTCGGGGGGGGGAATTATCAGCGATGGA‑TTACTGCACAAACCCCTGCGGGAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAggggg > 1:322113/1‑248 (MQ=255) tttAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGGTGGTCGGGGGGGGGGATTATCAGCGCTGGG‑TTTCTGCCCAAACCCCCGCGGAAA‑TTTCTCTTGATCCAAAAATCACCCATTACGAACCGCTGGCAAGGGATGCAATGGCAGG‑A‑G‑GAATTTTgg > 1:36607/1‑251 (MQ=255) gggCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTAGTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCGGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCAGTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGttc < 1:75377/251‑1 (MQ=255) ggCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGCTGGTCGGGGGGGGGGATTATCAGAGATGGA‑TTAATGCCCCACACCCTGCGGAAA‑TTCCTCTGGGTCAAAAACTCACCCCTTACGAACAGCTGGCAAGTGATTCACTGGCAGG‑T‑G‑AAATTGTGGGttct > 1:82024/1‑251 (MQ=255) gcgcgTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGTtcttct < 1:613376/251‑1 (MQ=255) gcgcgTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGTtcttct < 1:689867/251‑1 (MQ=255) gcgcTACTGAAGTTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTTCGCCATGTCCGTATTTAACGGTGAATATACTGGCGGTTGGTTGATCGGGGAGGGGAATTATCAGCGATGTA‑TTACTGCACAACACCCTGCTGAGA‑TTCCTCTGGATCAAAAACTCACCCATTGCGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑T‑ACATTTTGGGTTCTTCTGCGGGCGGCGAGC‑AGCCaaaacc < 2:20977/251‑3 (MQ=255) acggAATCTGACTGTGGATATCCGT‑TTTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGTTTCTTCTGCGGGCGGCGAGC‑AGCCAAAA‑GTTACcta < 2:459075/248‑1 (MQ=255) tGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGGTGGGCGGGGGGGGGGATTATCAGCGATGGA‑TTAATGCACAACACCCTGCGGGAA‑TTCCTCTGGAACAAAAAATCCCCCATTACGAACAGCTGGCAAGTGATGCACCTGCCGG‑A‑G‑AAATTGTGGGGTCTTCTGCGGGGGGGGGGC‑AGCCAAAA‑ATTACctac > 1:477323/1‑251 (MQ=255) aaTCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGGTGGG‑TTACTGCACAACACCCTGCGGGAA‑TTTCTCTGGATCAAAAACTCACCCACTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑GGAAATT‑TGGGTTCTTCTTCGGGCGGCGGGC‑AGCCAAAA‑TTTACctaat > 1:30738/1‑248 (MQ=255) aTCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGGTTGTTGGTCGGGGGGGGGGATTATCAGGGGTGGG‑TTTCTGCACAACACCCTGCGGAAAATTCC‑CTGGATCAAAAAAACCCCCACTACACAAAGATGGCAAGGGAGACACTGGCAGGGA‑G‑AAAT‑GTGGGGTCTTTTGCGGGGGGGGAGG‑AGACCAAA‑TTTAcaatctat > 1:523326/1‑244 (MQ=255) gactgaTGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTATg < 2:30738/248‑1 (MQ=255) actgaTGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTCTTTAACGGTGAATATACTGGCGGATGGTTGGTCGGGGGGGGGAATTAACAGCGATCGA‑TTACTGCACAACACCCTGCGGGAA‑TTCCTCTGGATCAAAAACCCACCCATTACGAACAGCTGGCAAGTGATGCACCGGCAGG‑A‑G‑GAATTGTGGGTTCTTCTGCGGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTATTcac > 1:108616/1‑250 (MQ=255) cGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTAGGCACAAACGCCGTCAgg < 1:519566/251‑1 (MQ=255) ctGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑GTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGTTCTTCTGCGGGCGTCGAGC‑AGCCAAAA‑TTTACCTACTATGCACAAACGCCGTCAGGCa < 1:590129/248‑1 (MQ=255) ggCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGGTCTGCTGCTGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTATGCACAATCGCCGTCAGGCGATaaa < 2:305345/251‑1 (MQ=255) gaagaTGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGCTGGGCGGGGGGGGGAATTATCAGCGATGGT‑TTACTGCCAAACACCCCGCGGGAA‑TTCCTCTGGATCAAAAAATCAACCATTACGAACAGCTGGCAAGGGATGCACTCGCAGG‑AAG‑AAATT‑TGGGTTCTTCTGCGGGCGGCGAGC‑AGACCAAA‑TTTACCTACTATGGACAAACGACGCCACGCAAAAAACAtaggtt > 2:578556/1‑246 (MQ=255) aCGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTGTTGGTG‑AAATTCa < 2:7234/249‑1 (MQ=255) cGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTTGGTGGTCGGGGAGGGGTAATATCCGCGATGGA‑TTACTGGACAACACCCTGCGGGAA‑ATCCTCTGGGTTCAAAACTCCCCCCTTACGAACAGCCGGCAAGAGATGCACTGGCAGG‑A‑G‑AAAATGTGGGTTTTTCTTCGGGGGGGGGGG‑CGCCAAAAGTTTAC‑TACTATTCCCCAACGACGTCAGGCAATAAACCTGTTTTGGGG‑AAAttacccc > 2:525681/1‑246 (MQ=255) cGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGGCGGGGGGGGGAATTTTTAGCGGTGGA‑TTAATGCACAACACCCCGCGGAAA‑TTTCTCTGGGTCAAAAAATCACCCATTACGAACAGCCGGCCAGAGATTCACTGGGAGG‑G‑G‑AAAATTTGGGGTTTTCTTCGGGCGGCGAGCCAACAAAAA‑TTT‑CCCACTATGAAAAAACGCCGGAAGGCAATAAACATGTGTTTGTGGAAATTCAcc > 1:112726/1‑251 (MQ=255) gACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTGTTGGTG‑AAATTCACCGTACcac < 1:467288/251‑1 (MQ=255) ttAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGGGGGGGAATATCAACGATTGC‑TTACTGCCCAACAACCCGCGGAAA‑ATCCTCTGGAACCAAAACCCACCCAATACCGACAGCTGGCAAGGGATGCACCGGAAGG‑A‑GGAAATT‑TGGGGTTTTCTGCGGGCGGCGAGG‑CGGCAAAA‑ATTACCTACCTTTCACAAAAGCCATCAAGCAATAAACAATTGTTGGTG‑GAATTCACCggacacccccaaacc > 1:185134/1‑237 (MQ=255) gcTGGCGGTGGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCGGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTGTTGGTG‑AAAGTCACCGTACCACAGCAAACCGCGGTCAGCCAACg < 2:120129/250‑1 (MQ=255) cTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑C‑G‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTATGCACAAACGCCGTCAGGCaa > 1:367286/1‑196 (MQ=255) cTGGCGGTTGGTTGGGCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑GTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGAGGCACTGGCAGT‑A‑G‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTAGGCACAAACGCCGTCAGGCaa < 2:367286/196‑1 (MQ=255) ggCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTGTTGGTG‑AAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGt < 1:392595/249‑1 (MQ=255) gttggttgGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTGTTGGTG‑AAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGt < 1:49756/251‑1 (MQ=255) ggtCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TGCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGTTCGTCTGCGGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTGTTGGTG‑AAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGTGACCTGc < 1:364119/251‑1 (MQ=255) gggaggggaATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTGTTGGTG‑AAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGTGACCTGCTAAtt < 1:251009/251‑1 (MQ=255) | GTGCTGGCCGCAGGGAAGTTGTCTGGTAACAGGCGCAGATGGCGACGAACAGTGGTTTGATGGTTTGCCCTGGTATTTGACCGATCTCCGACCGCAGGGCTTTTTAGGGCGCGCGTGGGGCAGGAAGTTAGCCGCGCAACTGAATCTGACTGATGATATACGTCTCTGGCAGGAAGAAGATGTGCTCTACGCCCTGACCGTATTTAACGGTGAATATACTGGCGGTTGGTTGGTCGGGGAGGGGAATTATCAGCGATGGA‑TTACTGCACAACACCCTGCGGAAA‑TTCCTCTGGATCAAAAACTCACCCATTACGAACAGCTGGCAAGTGATGCACTGGCAGG‑A‑G‑AAATTGTGGGTTCTTCTGCGGGCGGCGAGC‑AGCCAAAA‑TTTACCTACTATGCACAAACGCCGTCAGGCAATAAACATGTGTTGGTG‑AAATTCACCGTACCACAGCAAACCGCGGTCAGCCAACGTTGGGGTGACCTGCTAATT > NC_000913/4622011‑4622497 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |