| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,556,207 | 0 | T | C | 28.2% | 145.4 / 13.3 | 71 | S215G (AGT→GGT) | rtcA | RNA 3'‑terminal phosphate cyclase |
| Reads supporting (aligned to +/- strand): ref base T (48/3); new base C (0/20); total (48/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.86e-15 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGT‑AGCGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC > NC_000913/3555957‑3556453 | cccGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCCGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGT‑AGCGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGCCTTCAAGCGCGACGGTCTTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCCTGCAGGGAAAAACt > 1:32422/1‑251 (MQ=255) cAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGT‑AGCGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTc > 1:108157/1‑249 (MQ=255) tCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGT‑AGCGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAACAAGCG‑TTCGGTGATATTTTCACTTTCGCCTTCAAGCGAGACGGTATTACCAG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATg > 2:642131/1‑251 (MQ=255) cAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGT‑AGCGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGgcgc > 2:202636/1‑251 (MQ=255) aaGATATTCCCCCACCGCCTCCGTGCTTGCCAGGT‑AGCGTTTCACCTCTT‑TCACCACCTGTGCCGCACCCAAC‑TCGGCACTGACGCGCTTTTCACCGACGACAAGACAGCG‑CTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAATGTACCGATTTCACGCTCAGCATCATGGcgcg > 2:436763/1‑251 (MQ=255) cctcctaccccccgcccccgTGCTTGCC‑GGTGTGCTTTTCCCCTCTT‑CCCCCAACTGT‑CCCCAACCCCCCTCGCCACTGCCGCGTTTTTCACCGCCAAAAAAAAGGTG‑TTCGGTGATATTTTCCCTTTCGCCTTAAAGCGAGAGGTTATTCCCCG‑GCCCCGGGTC‑GCGCGGCAGTTTATAATTATTCTGT‑CCATGCAGGAAAAAACCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCgg < 2:548127/238‑1 (MQ=255) tCCCCCACCGCCGCCGTGCTTGCCAGGT‑AGCGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGAGCGACACAc‑c > 1:213964/1‑251 (MQ=255) aCCGCCGCCGTGCTTGCCAGGT‑AGCGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCgg > 1:548127/1‑239 (MQ=255) aCCGCCGCCGTGCTTGCCAGGT‑AGCGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTa > 1:170987/1‑250 (MQ=255) cgccgccgTGCTTGCCAGGT‑AGCGTTTAACCTCTT‑TCACCAACTGCGACGCCACCACC‑TCGGCACTGCCGCGCTTTTCACCGACGACACAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCACCTGGTC‑GCGTGGCAGGTTATGAATATTCTGT‑TCATGAAGGGAAAAACTAC‑CC‑GCCAGTGTAGCGATTTAACGCTCAGAAACATGGCGCGGCACAC‑CAGCTAAt > 2:407129/1‑250 (MQ=255) ccgccgTGCTTGCCAGGT‑AGCGTCTC‑CCCCTTCACACCCACTGTCCCCCACCCGCC‑CCGGCACTGACGCTCTTTCCCCCGACGAAAAAAAAGCG‑TTGGGTGATTTTTTCTCTTCCGACTCAAAGCGAGAGGGTATCCCCCG‑GCCCCTGGTC‑GCCCGGCAGTTTATGAATTTTCTGT‑ACAGGCAGGGAAAACCCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGa < 1:160927/251‑1 (MQ=255) cgccgTGCTTGCCAGGT‑AGCGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCACGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTCATGCATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGa > 1:307299/1‑250 (MQ=255) cgTGCTTGCCAGGT‑AGCGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CCGCTAATAGAACtt > 2:15381/1‑251 (MQ=255) cTTGCCAGGT‑AGCGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTcc > 1:228233/1‑251 (MQ=255) cAGGT‑AGTGTTTCACCTCTT‑TCAACAACTGTGCCGCCACCACC‑TCGGCACTGACGCGCTTTTCACCGCAGACAAAAAAGCG‑ATCGGTGATATTTTCACTTTCGCATTCACGCGAGACGGTATTACACG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAACACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCACCAAAC‑CAGCTAATAGACCTTCTCCAccc > 2:51930/1‑248 (MQ=255) aGGT‑AGCGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCCGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGCTTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGCACTTCTCCACGCAt > 1:362656/1‑251 (MQ=255) aGGT‑AGCGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCAt > 1:61572/1‑251 (MQ=255) cGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATCTTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGcac > 2:252761/1‑251 (MQ=255) cGTTTCACCTCTT‑CCACCAACTGTGCCTCACCCCCC‑CCGGCAGTGCCCCGCTTTTCACCGCCGAAAAAAAAGCG‑TTCGGTGATATTTTCACTTGCCACTTCAAGCGAGACGGTTTTCCCCG‑GCCCCGGGTC‑GGGCGGCAGGTTATAAATATTCTTT‑TCATGCATGGAAAACCCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGcac < 1:436846/251‑1 (MQ=255) tttCCCCTCTT‑TCTCCAACGGGGCCGAAACCCCC‑CCGGCCCTGACCCTTTTTGCACCGACGAAAAAAAGGCG‑TGCGGTAATTTTTTCACTTTCGACTTCAAGCGAGACGTTATGCCCCG‑GCCCC‑GGTCCGCGCGGCGGGTTATGATTATTCTGT‑GCATGCAGGAAAAAACCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGcaca < 1:354321/250‑1 (MQ=255) ctctT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTcc > 1:176236/1‑251 (MQ=255) ctT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcg > 1:540157/1‑251 (MQ=255) tCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGaa > 2:468550/1‑219 (MQ=255) cAACTGTGCCTCAACCACC‑ACGCCACTGACGCGCATTTCACCGACGACAAAAAAGAG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGCCGGTATTACCCG‑GCCCCTGGAC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGATAATAGAACTTCTCCACGCATCTGCACCATGTTCCCGCGCTCGc > 2:461581/1‑251 (MQ=255) cAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGc > 2:147989/1‑251 (MQ=255) ccaccctccgcggcaccgccccgcTTTTCCCCGACGACAAAAAAGCG‑TTCGGTGATATTTCCCCTTCCGGCTCCAAGCGAAACGTTATCCCCCG‑GCCCCTGGGC‑GCGCGGCAGGTAAAGAATATCCTTT‑CCAGGCGGGGAAAACCCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCaa < 1:191109/230‑1 (MQ=255) cAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAACGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa > 2:339424/1‑249 (MQ=255) aaaccccccgggCAGTGACGCGTTTTCCCCCGACGAAAAAAAAGCG‑TGCGGGGATTTTTTCACTTCGGACTAAAAGGGGGAGGGTATTCCCCG‑GCCCCGGGCC‑GCGCGGAGGGTTAGGAATATTTTGT‑TCAGGAAGGAAAAAACCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAg < 1:599547/241‑1 (MQ=255) ccacc‑TCGGCCCTGCCTCGCTTTCCACC‑ACCAAAAAAAAGGGGTTGGGTGATTTTTTCTCTTTCGACTCAAAGGGAGCTGGTATCCCCCG‑CCCCGTGGCC‑GCGGGGCGGGTTATAAATATTCTTT‑TCATGCAGGAAAAAACCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGgtg < 1:497304/251‑1 (MQ=255) c‑TCGGCCCTGACGCGCTTTTCACCGACGACAAACCAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTa > 2:131355/1‑250 (MQ=255) cggactcgacgcccttccccccGACGACAAAAAGTCT‑TCCGGTGATATTTTCCCTTTCGTCTACAAGCGATGCGGTATCCCCCG‑GCCCCTGGTC‑CCGCGCCGGGTTATGAATATTCTGT‑TCAGGCAGGAAAAAACCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAAc < 2:455605/231‑1 (MQ=255) cACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGAt > 1:384122/1‑251 (MQ=255) gccgcgctttccaccacaaaaaaaaaaGCT‑TTCGGTGTTATTTTCCCTTTCGCCTTCAAGCGAGCTGGTTTTCCCCG‑GCCCCTGGGC‑GCGGGGTGGGTTATAAATTTTCTGT‑TCATGCAGAAAAAACCCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCa < 2:228233/230‑1 (MQ=255) gactcgcTTTTCCCCGAAAAAAAAAAAGCG‑TGCGGTGATATTTTCTCTTTCGCCTTAAAGCGAGATGGTATTCCCCG‑CCCCCTGGCC‑GCGCGGCAGTTTATAAATATTTTGT‑TCAGGCAGGAAAAACCCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGc < 1:547881/245‑1 (MQ=255) ttttCATCGACGCCACAAAAGCG‑TTCGGTGCTATTTTCACTTTCGACTTCAAACGAGACGGTATTACCCG‑GCACCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCAAAGTTGCAAGGTGTTAAACGATGACACggccgt > 2:73805/1‑247 (MQ=255) aaaGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGccacc > 2:236667/1‑250 (MQ=255) ggTGATTTTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCACTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCCCGGGCGAGACTTCCGTTGCCACCACACCGCCTc > 2:290076/1‑251 (MQ=255) ttCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCGAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAAc > 1:227313/1‑251 (MQ=255) gACTTCAAGCGAGCCGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTACCGCGCTCGCCAAGTTGAAAGGTGTTACACGATGCCACGGGCGAGACTTCCGTTGCCCACACACAGCCTCCGGCAGGGTAAAAACCGt > 2:532339/1‑251 (MQ=255) aCTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGCTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCACCATGGCGCGGCACAC‑CCGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTg > 2:670220/1‑251 (MQ=255) cAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGt > 1:7592/1‑251 (MQ=255) aaGCGAGACGGTTTTCCCCG‑GCCC‑GGGTCCGCGCGGAAGGTTATGAATATTCTGT‑CCAGGCAGGAAAAACCCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGGTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTa < 1:252761/251‑1 (MQ=255) gctaaccGGTATT‑CCCGTGCCCCGGGGC‑GCGCGGCAGTTTATGAATATTTTTT‑TCATCCAGAAAAAACCCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAAc < 1:508774/245‑1 (MQ=255) gagaCGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTcc > 1:333973/1‑204 (MQ=255) gagaCGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACcaca > 1:503088/1‑216 (MQ=255) tATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGtt > 1:588076/1‑251 (MQ=255) cccG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCtg > 1:709120/1‑251 (MQ=255) cccG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCtg > 1:326196/1‑251 (MQ=255) cgCCCCTTGTCCGCGCGGCATTTTATGAATATTC‑GTATCATGCAGGAAAAATCTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGTACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGGGGTTTGCtgat < 1:456932/250‑1 (MQ=255) ccccTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCtgatga > 1:114678/1‑250 (MQ=255) ggggTC‑GGGCGGCAGGTTATGAATATTCTGT‑TCAGGCAGGAAAAAACCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTc < 1:131355/249‑1 (MQ=255) cgcgGCAGGTTATGAATATTCTGT‑CCAGGAAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTAtttt < 1:43905/251‑1 (MQ=255) cgGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGGGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGACCTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACCCCGCCTCCGGCAGGGTAAAACCCGTGGCGTAACAGCGCGGTTTGCTGATGAATTCCTATTTTCg > 2:543187/1‑251 (MQ=255) ggCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCg > 1:403217/1‑166 (MQ=255) ggCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGc > 1:155467/1‑251 (MQ=255) cAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGccc > 1:97540/1‑250 (MQ=255) gggTTATGAATATTGTGT‑TCAGGCAGGAAAAAACCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCcag < 1:593707/250‑1 (MQ=255) gTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCcagc > 1:313371/1‑250 (MQ=255) ttATAAATATTCTTT‑GCATACAGGAAAAACCTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCcagca < 1:436763/250‑1 (MQ=255) taaatattgggT‑TCATGCAGGAAAACCCCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCg < 1:249843/240‑1 (MQ=255) aaattttcggttcaggaaggAAAAACCCC‑CCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGc < 2:227313/233‑1 (MQ=255) atacttggtgtgtgcaggAAAAACCCCACC‑GCCAGTGTAGCGATTTCCCGCTCAGCAACATGGCGCGGCCCGC‑CATCTAACAGAACTTCGCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTGGCAATGTGTTAAACGATGCCACGGGCGAGACTGCCGTGGCCACCACGCCGCCTCCGGCATGGTAAAAGCCGTTGCGTAACAGCGTGGTTTGCTGATGAATTCCTAATTTCGCCAGCAGCGGCTc < 2:223702/235‑1 (MQ=255) atTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTcc > 1:583757/1‑250 (MQ=255) gT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCAcc > 1:681416/1‑251 (MQ=255) aaggCAGGAAAAAACCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAAGAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGAGGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTGCGCCAGCAGCGGCTCCAGCACCcgg < 2:709120/248‑1 (MQ=255) gCAGGGACAACCTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACCTGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGGAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCcggcgg > 1:564128/1‑251 (MQ=255) aGGGAAAAACTCC‑CC‑GCCAGTGTCGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGAt > 1:203132/1‑251 (MQ=255) ggAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATa > 2:473418/1‑250 (MQ=255) ggAAAAACCCC‑CCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATa < 1:642131/251‑1 (MQ=255) aaaaaCTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATaaa > 1:437822/1‑250 (MQ=255) aaaaCCCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCA‑ACACATCTAATAGAACTTCTCAACGCACCTGCACAATGTTCCCGCGCTCGCCAAGTGGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCTCCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAAATCCTATTTTCGCCATCAGCGGCTCCAGCACCCGGCTGATAAAAt < 2:213964/251‑1 (MQ=255) aaaCTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAAAATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTGCCGTTGCCACCACACCGCCTCCGGCAGGGTAAACAACGTGGCGTACCAACGTGGCTTGCTGATGACTTCCTATTTTCGCCAGCAGCGGCGCCAGCACCCGGCGGAGAAAATc > 2:174897/1‑251 (MQ=255) | CCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGT‑AGCGTTTCACCTCTT‑TCACCAACTGTGCCGCAACCACC‑TCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCG‑TTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG‑GCCCCTGGTC‑GCGCGGCAGGTTATGAATATTCTGT‑TCATGCAGGGAAAAACTCC‑CC‑GCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAC‑CAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTTGCCACCACACCGCCTCCGGCAGGGTAAAAACCGTGGCGTAACAGCGTGGTTTGCTGATGAATTCCTATTTTCGCCAGCAGCGGCTCCAGCACCCGGCGGATAAAATC > NC_000913/3555957‑3556453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |