| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,337,723 | 0 | A | C | 28.6% | 103.9 / 13.4 | 74 | G566G (GGT→GGG) | gyrA | DNA gyrase subunit A |
| Reads supporting (aligned to +/- strand): ref base A (38/12); new base C (1/19); total (39/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.45e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGCCATGAAGACTTTCACGCCTTCTTCAAACTCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACGGATCACTTCCATCAGACGATCGGCGCTACCAAGAATACGCAACAGTTCCGCGATCT > NC_000913/2337474‑2337970 | cGCCATGAAGACTTTCACGCCTTCTTCAAACTCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTAc < 2:7063/251‑1 (MQ=255) cATGAAGACTTTAACGCCTTCTTCAAACTCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGAC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGATGGAGAAGCACAGAATATGGTCGTGAGTG‑TCCGCCACC‑AGCAGT‑CGGTCG‑ATAAAACCTTCTTCTTT‑AATACGGGCGGCAGATTTACCtt > 1:545222/1‑251 (MQ=255) tGAAGACTTTCACGCCTTCTTCAAACTCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑c > 1:7745/1‑251 (MQ=255) gAAGACTGTCACGCCGTCTTCAAACTCGGTCACTGGCAGGATCGCAGGGATACGTGCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGTCCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCTACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑GTCGCCACC‑AGCATT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATGCGTGCGTCAGATTTCCCTTT‑c < 2:669884/250‑1 (MQ=255) gACTTTCACGCCTTCTTCAAACTCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAGGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑Gc > 1:585385/1‑251 (MQ=255) gACTTTCACGCCTTCTTCAAACTCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTACGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGCAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATCCGTGCGACTGCTTTACCTTT‑CCC‑Gc > 1:106947/1‑251 (MQ=255) aCTTTCACGCCTTCTTCAAACTCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑Gcc > 2:258194/1‑251 (MQ=255) tttCACGCCTTCTTCAAAATCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCATGCTCCAGCGGCAGCAGGATGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑CGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCac > 2:329229/1‑251 (MQ=255) tCACGCCTTCTTCAAACTCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCCGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCacg > 1:324612/1‑250 (MQ=255) cttcAAACTCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCt > 1:8707/1‑251 (MQ=255) cAAACTCGGTCACGGGCAGGATCGCAGTGATCCGTCCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGCCCGCGCGCGCCACGAGGGGCTTCCGGA‑AACTAATAAACTTTCATCGAATAGACGCGACCAGGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCCCC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGGGGCAGATTTCCCTTT‑CCC‑GCCACGACGCTGCGCTTCg < 1:17044/251‑1 (MQ=255) gggCAGGAGCGCAGGGATGCGTTCGTCCGCCTCCGTCGCCAGAAGGTTGACAATCGGACGCCCGCGCGCGCCACGAGTGGCTTCCGGA‑AATTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCAAAGAATAGGGTCGTGAGTG‑TCCCCCACC‑AGCAGT‑CGGTCG‑ATAAATTCTTCTTCTTA‑AATCCGTGCGGAAGATTTACTTTC‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCg < 1:520715/250‑1 (MQ=255) ggCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCTCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGCGACGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑CATACGTTCGGCCGATTTCCCTTT‑CCC‑GCCCCGACGCTGCGCTTCGTATTCAGAAATCgg > 2:92807/1‑251 (MQ=255) attcGTTCGCCCGGCCCCAGCGGCAGCAGGTTGACGACCGGACGACCGCGCCCGCCACGGGTGGCT‑CCGGCCAACTGATAAACTTTCATCGAATAGACGCGACCCCGGCGGGAGAAGCACAGAATATGGCCGTGAGTT‑TTCCCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATCCGTGCGGCAGATTTCCCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTa < 1:252846/248‑1 (MQ=255) aTACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGCCGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGCCGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGCCGCTTCGCTTCTTATTCACAAAGCGGATGCTACTTAACGt > 2:217088/1‑250 (MQ=255) tACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATTCGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCCGAAAGCGGCTGATACTTAACGt > 2:665760/1‑249 (MQ=255) ccTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGC‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTg > 2:552836/1‑250 (MQ=255) tGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTg > 2:194272/1‑248 (MQ=255) ccccAGCGGCGGCAGGTTGACGAGCGGACGACCGCGCGCGCCACGAGTGGCTTCGGGC‑ACGTGATAAACTTTCATCGAAGGTACGCGCCCCCGGCTGGAGAAGCAAAAAATATGTTCGTG‑GTGGTCCGCCACC‑ATCAGT‑CGGTCT‑AGAAGGTCTTCTTCTTT‑AAAACGGGCGTCTAATTTCCTTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTgagaga < 1:661675/249‑1 (MQ=255) cggcatcaggtggtctaTCGGACGACCGCGCCCCCCCCGAGGGGCTTCCGGC‑ATCTGATAAACTTTCATCAAAAAGACGCCACACCGGCTGGATAAACCCAGAATATGGTGGTGAGTG‑TTCGCCCCC‑AGCAGC‑CGGCCA‑ATAAGTTCTTTTTCTTT‑ATTTCGGGCGCCAGATTTCCCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGGAAGCGTCTCATACTTAACGTAACCCGGGTGAGAGAGCGTCa < 1:236515/235‑1 (MQ=255) cGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCTTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCATATTTACCtt < 2:39491/179‑1 (MQ=255) cGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCtt > 1:39491/1‑179 (MQ=255) ggTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACcac > 1:287288/1‑250 (MQ=255) gATCGGACGACCGGGCGGGCCAGGGGGGGCTGCCGGA‑AACGGATAAACTTTCAAAGAAAAGACGCGCACACGGCGGGAGAAGCACAGAAGAGGGGCGTGAGTG‑TTCGCCACC‑AGCAGG‑CGGTCA‑AAAAAGTCTTCTTTTTT‑AATACGTGCGGAAGATTAACCTTG‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCt < 1:92807/251‑1 (MQ=255) ggACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCCACGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATACAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTgggg > 1:46377/1‑250 (MQ=255) gcgcgcgcCACGGGTGGCTGCCGGC‑AACTAATAAACTTTCATCGAATGGACGCCACACCGGCGGGAGAAGCAAAGAATTGGGTCGGGGGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTTTTT‑AATACGGGCGGCAGATTTCCCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGAt < 1:516438/251‑1 (MQ=255) gcgcgcgcCACGAGTGGCTTCCGGC‑AACTGATACACTTTCATCGAATAGACGCGACCACGGCTGGCGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACATTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATc > 1:246988/1‑247 (MQ=255) cgcCACGGGCGGCTTCCGGC‑AACTTATACAGTTTCATCGAAGAGACGCCCCCCCGGCTGGAGAAGCAAATAAGATGGTCGTGATTT‑GTCGCCCCC‑GGCAGT‑CGTTCG‑AAAAATTCTCCTCCTTT‑AAGACGTTCGGCAGATTCACCTGC‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCtt < 2:566145/249‑1 (MQ=255) ccggggggtttCCGGA‑AACTAATAAATTTTCATGGAATAGCCGCGCCCCCGGGGGAAGAAGAAAAAAATATGGTCGTGAGTG‑TTCGCCCCC‑AGCAGT‑CGGTCA‑ATAAAGTTTTCTTTTTT‑AATCCGTGCGGCAGATTTACCTTC‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGt < 2:276416/242‑1 (MQ=255) cgggTGGTTTCCGGC‑AACTGAAAAACTTTCATCGAATAGACGCGACCGCGGCGGGAGAAGCAAAGAATATGGTCGTGAGTG‑TTCCCCACC‑AGCAGC‑GGGTCG‑ATAAAGTCTTCTTCTTT‑AAGACGTGCGGCATATTTCCCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGtt < 1:552836/248‑1 (MQ=255) gCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAACGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGCCGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCCCGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTc > 2:100179/1‑251 (MQ=255) cccggaaacgtaaaaaCTTTATTCGAAGAGCCGCGCCCCCGGCTGGAAAACCACAGAATATGGTCGGGATTG‑T‑CCCCACCCAGCTGT‑GGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTCCCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTgc < 2:171536/238‑1 (MQ=255) cGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATAAGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCGTCCAGGTTGATGTCTgcgc > 2:456385/1‑251 (MQ=255) ggC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCt > 1:364735/1‑251 (MQ=255) attGATAAACTTTCATCGAATAGACGCGACCACGGCGGGAGAACCACAAAATATGGTGGTGGGTG‑TCCCCCCCC‑AGCAGT‑GGGTCA‑ATAAATTCTTCTTCTTT‑AATACGGGCGGAAGATTTACCTTC‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTg < 1:258194/249‑1 (MQ=255) acggATAACCTTTCAGAGAATAGCCGCGACAACGGCGGGAGAAGCAAAGAATATGGTCGTGATTG‑TGCGCCACC‑AGCATT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTCCCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTg < 2:420986/248‑1 (MQ=255) aCTGATAACTTTTCAGCGAGAAGACGCGCCCGCGGTTGAAAAAGCACAGAATAGGGTCGTGGGTG‑TTCGCCACC‑AGCAGC‑CGGCCG‑ATAAATCCTTCTTCTTG‑AATAGGTGCGGCAGATTTCCCTTC‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTg < 1:598081/251‑1 (MQ=255) tGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGACTATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGCTCTTCCAGGTTGATGTCTGCGCTGTTGGc > 1:246014/1‑251 (MQ=255) tGATAAACTTTAAGCGAATAGCCGCGACCACGGTGGGAAAAGCACAGAATTGGGTCGTGAGTG‑TCCGCCCCC‑AGAAGT‑CGTCCG‑ATAAAGTCTTCTTCTTT‑ATTCCGTGCGTCAGTTTTACTTTC‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTgg < 1:452764/250‑1 (MQ=255) aCTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGAt > 1:76247/1‑251 (MQ=255) ttCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTc > 1:434740/1‑251 (MQ=255) cATCGAATAGACGCGACCACGGCTGGAGAAGCACAGCATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTATTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTc > 2:362040/1‑249 (MQ=255) gACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGtt > 1:110760/1‑251 (MQ=255) accccggtgggaaaaGCACAGAATATGGTCTGGAGTG‑TGCCCCTCC‑AGCGGT‑CGGTCG‑AAAAAGTCTTCTTCTTT‑ATCCCGTGCGGCAGATTTTCTTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATGTCAGTACGACGTTTGTCAc < 1:269719/238‑1 (MQ=255) aCCACGGCTGGAGAAGCACAGAATATGGTCGGGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTGGTATTCAGCAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGAGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGCTTTCCGTACGACGTCTGTCAc > 1:318766/1‑251 (MQ=255) cACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGCATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGCGAGCGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCg > 1:689810/1‑251 (MQ=255) ccggcggGAGAAGCAAAGAATAGGGTCGGGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGAAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGa < 1:194272/250‑1 (MQ=255) tGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGGGATTTCAGTACGACGTTTGTCACCGAACTGt > 1:411599/1‑251 (MQ=255) ggAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGCTCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGCTTTCAGTACGACGTTTGTCACCGAACTGtt > 2:405187/1‑251 (MQ=255) gaagaAGCAAAGAATGTGGTCGGGAGTG‑TTCGCCACC‑AGCGGT‑CGGCCG‑ATAAAGTCTTCTTCTGT‑AATACGTGCGGCATATTTCCCTCT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCTTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGt < 1:604168/248‑1 (MQ=255) aatggtgcGTGAGTT‑TCCGCCACC‑AGCAGT‑CG‑TCGTAAAAAGTCTTCTTCGTT‑AATACGGGCGGAAGATTTTCCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACTACGTTTGTCACCGAACTGTTCACGAAccagctc < 2:258214/244‑1 (MQ=255) atGGTCGTGAGTG‑TTCGCCGCC‑AG‑AGTTAGTTGG‑AAAAAGTCTTCT‑CTTTGAATACGTGGGGAAGATTTCCCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGAGGTCTGCGCTGTTGGCGGTGATTTCAGGACGACGTGTGTCACCGAACTGTTCACGAAccagctcca < 2:105237/251‑1 (MQ=255) atGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAAccagctccc > 1:222998/1‑250 (MQ=255) gttgtggtgttgcccccccc‑aGCAGT‑CGCTCG‑CTAATGTCTTTTTCTTT‑ATTACGTAGGGCAGGTTACCCTTC‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGGTTGTCACCGAGCTGTTCACGAAccagctccagc < 2:490661/233‑1 (MQ=255) gTGATTG‑TTCGCCCCC‑AGCAGT‑CGGTCG‑TAAAAGTCTTCTTTTTT‑AATCCGTGCGGAAGATTTCCCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCtt < 1:534951/251‑1 (MQ=255) gTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGGTTTCAGTACGGCGTTTGTCACCGAACTGTTCACGAACCAGCCCCAGCTCtt > 2:396343/1‑251 (MQ=255) gtccgccccacgcagT‑CGGCCA‑AAAAAGTTTTCTTCTTA‑AAGTCGTGGTGCAGTTTTACCTTC‑CCC‑GCCACGACGCCGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCGGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACgg < 2:365579/239‑1 (MQ=255) cccacc‑aGCAGC‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGGGCGGCAGATTTCCCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACGGATCAc < 1:163642/250‑1 (MQ=255) cacc‑aGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCCGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTTACCGAACTGTTCACGAACCAGCTCCAGCACTTCACGGTTCACtt > 2:179015/1‑251 (MQ=255) ggt‑cggtca‑AAAATGTCTTCTTTTTT‑AATGCGTGCGGTAGATT‑CCCTTTACCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACGGATCACTTCCATCAg < 2:253538/250‑1 (MQ=255) caaTAAAGTTTTCTTCTTT‑AATGCGGGCGGCAGATTTCCCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCGTCACGGATCACTTCCATCAGACGATCg < 2:364735/249‑1 (MQ=255) aaaGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACGGATCACTTCCCTCAGACGATCGgcgc > 2:445081/1‑251 (MQ=255) ttcttcttT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACGGACCACTTCCACCAGACGCTCGGCGCTACCa > 1:483261/1‑250 (MQ=255) catcttttcttataccgggggaaGATTTTCCTTT‑CCCCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACGGATCACTTCCATCAGACGATCGGCGCTAcc < 2:7745/229‑1 (MQ=255) cttT‑AATACGTGCGGCAGATTTACCTTT‑CAC‑GCCACGACGCTGAGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCAAGGTTGATGTCTGCGCTGTTGGCGGGGATTTAAGTACGCCGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACGGATCACTTCCATCAGACGATCGGCGCTACCAAGAAt > 2:295833/1‑250 (MQ=255) aaTACGTGCGGCAGTTTTACCTTT‑CCC‑GACACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTATGCGCTGTTGGCGGTGATTTCAGTACGCCGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTAAAGGGTCCCTTCTCTCAGACGAACAGCGATACCCAGATTACGcc > 2:281183/1‑250 (MQ=255) aTACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACGGATCACTTCCATCAGACGATCGGCGCTACCAAGAATACGCa > 2:495540/1‑250 (MQ=255) ggCGGCAGTTTTCCCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACGGATCACTTCCATCAGACGATCGGCGCTACCAAGAATACGCAACAGtt < 2:208618/250‑1 (MQ=255) gggaaGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACGGATCACTTCCATCAGACGATCGGCGCTACCAAGAATACGCAACAGTTcc < 1:306607/247‑1 (MQ=255) ggccatttttACCTTC‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACGGATCACTGCCATCAGACGATCGGCGCTACCAAGAATACGCAACAGTTcc < 2:222998/244‑1 (MQ=255) ggCAGATTTACCTTT‑CCC‑GCCAAGACGCTGCGCTTCGTATTCAGAAAGAGGCTGATACTTAACAAAGCCCTGGGGAGAGAGCGTCACGACCCCATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGAGATTTCAGTACGACGTTTGGCACCGCACTGTTAACGACCCAGCTCCAGCTCTTCACGGATCAATTCCATCAGACGATAGGCGCTTGCAAGAATACCCAACAGTTCcg > 2:512085/1‑251 (MQ=255) aGATTTTCCTTC‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACGGATCACTTCCATCAGACGATCGGCGCTACCAAGAATACGCAACAGTTCCGCGa < 1:101794/251‑1 (MQ=255) aTTTCCCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTGCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACGGATCACTTCCATCAGACGATCGGCGCTACCAAGAATACGCAACAGTTCCGCGATc < 1:263946/251‑1 (MQ=255) tttACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACATAACGTAGCCCTGGTGCGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACAAGCTCCAGCTCTTCCCGGCTCACTTCCATCAGACGATCGGCGCTACCAAGCATACGCAACAGTTCCGCGctct > 1:693933/1‑251 (MQ=255) | CGCCATGAAGACTTTCACGCCTTCTTCAAACTCGGTCACTGGCAGGATCGCAGTGATACGTTCGTCCTGCTCCAGCGGCAGCAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGC‑AACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTG‑TTCGCCACC‑AGCAGT‑CGGTCG‑ATAAAGTCTTCTTCTTT‑AATACGTGCGGCAGATTTACCTTT‑CCC‑GCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCTTCCAGGTTGATGTCTGCGCTGTTGGCGGTGATTTCAGTACGACGTTTGTCACCGAACTGTTCACGAACCAGCTCCAGCTCTTCACGGATCACTTCCATCAGACGATCGGCGCTACCAAGAATACGCAACAGTTCCGCGATCT > NC_000913/2337474‑2337970 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |