Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	4,123,923	IS2 (–) +5 bp	coding (530‑534/1026 nt)	cytR ←	DNA‑binding transcriptional repressor CytR

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4123923 =	0 (0.000)	53 (0.760)	47/488	0.4	100%	coding (534/1026 nt)	cytR	DNA‑binding transcriptional repressor CytR
	?	NC_000913	4498181 =	NA (NA)					noncoding (1/1331 nt)	IS2	repeat region
*	?	NC_000913	= 4123927	1 (0.010)	82 (1.180)	71/488	0.1	98.8%	coding (530/1026 nt)	cytR	DNA‑binding transcriptional repressor CytR
	?	NC_000913	= 4499511	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region

CATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTA  >  NC_000913/4497942‑4498422                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                  catcCCGGGCAAACGCCCGTGAATTATTCTAGGATTATTTTCTTTGTTAAAAAATACACACGGTATTAACTGATGTATTTACTTTTTACCGCTCCCTGCAGGGGGGATTATCAGATTCCGCGGTTATTCATGATGTATATACATTCAATAATTAAGTAACCTCATAAAAAATCTTGTACTCTCAGGGGGATGCGGGATAACTGCCGTAAGGAGTGCTGTAGGTATTGGAGTGTGCCTTGTAGACTGGccc                                                                                                                                                                                                                                         <  2:611242/250‑1 (MQ=255)  gtcCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTGTCTTTGTTAAAAAAGACAAACGGAATTAACTGATGTATTTACTATTTACCGCTACATGCAGGGAGGATTATCAGCATCCGCGGTTATTCATTATTTATATACATGCAATAAAAAAGTAAGCTCATAAAAAATCATGAACTCAAAGGGTGATGCGGGCTAACTGACGTAAGAAGTGCTACCGTGTGTTGATGGTCCCTTGTAGTATGGcccc                                                                                                                                                                                                                                        >  2:548844/2‑250 (MQ=255)    cccGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTACCTGCAGGGGGGATTATCAGAATCCGAGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGAAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTg                                                                                                                                                                                                                                     >  1:651561/1‑251 (MQ=255)             aTGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTcc                                                                                                                                                                                                                              >  1:610899/1‑249 (MQ=255)                          attCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTAGTTACCGCACCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCTGGAGAACTGACGTAAGGATTGCTGCAGGGAGTTGATTGACCCTTGTAGACTGGCCCCCTGAATCGCCATACAACCGATATCa                                                                                                                                                                                                               <  2:307129/251‑1 (MQ=255)                               aagATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTGACTATTTACCACTCCCGTCAGGTGGGATGAGCAAAATCCTCCGTTATACATTATATATATACATTCAATAAAAAAGTAACCTCATAAAAAAGCCTGTACTCACAGGCGGAGGCGGGATAACTTTCGTAAGGAGTGCTGCACGGACTCGCTGTGCCCTTGTAGATTTGCCCACTGAATCCCCAGACATCCAATATCACTTa                                                                                                                                                                                                           <  2:348838/248‑1 (MQ=255)                                 gATTATTTGCTTTGTTAAAAAAGACAAACGTTATTAACTGATGTATTTCCTATTTACCACTCCCTGCATGGGTGATTATCATAATCCGCGGTTATTCATTATCTATATACATTCAATAAAAAAGGAACCTCATAAAAAATCCTGTACTCACAGGTTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTTTATACTGGCCCCCTGAATCTCCATACAACCACAATCTCTTAAAt                                                                                                                                                                                                        <  2:571571/251‑1 (MQ=255)                                                  aaaaaGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAGGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt                                                                                                                                                                                        >  1:556036/1‑250 (MQ=255)                                                       gACAAACGGTATTAACTGATGTATTTAATGTTTCCCGCTCGCTGACGGGCGGATTCACAGAATCGGCGGTTCTTCCTTATTTATATACATTCACTAAAAAAGTACCCTCATAACAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGATGCAGGGCTTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGGATTAATACtcgt                                                                                                                                                                                  >  2:413141/1‑248 (MQ=255)                                                        aCAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGtt                                                                                                                                                                                 >  2:574249/1‑251 (MQ=255)                                                           aaCGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttttt                                                                                                                                                                              >  1:505580/1‑251 (MQ=255)                                                            aCGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttttt                                                                                                                                                                              >  2:108581/1‑250 (MQ=255)                                                                           gTATTTACTATTTACCGCGCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGgag                                                                                                                                                              <  1:706919/251‑1 (MQ=255)                                                                               ttactatttacCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAc                                                                                                                                                           >  1:19637/1‑250 (MQ=255)                                                                                   tatttacCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAgatg                                                                                                                                                      >  1:144400/1‑251 (MQ=255)                                                                                       tacCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAtgatt                                                                                                                                                   <  1:158264/250‑1 (MQ=255)                                                                                            cTCCCTTCAGGGGGGATTATCAAAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTACCTTGTAGACTGGCACCCTGAATCTCAAGACAACAAATATCAATTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGACATTGGAGAACAGATGATTGATGTc                                                                                                                                             >  2:139153/1‑251 (MQ=37)                                                                                               ccTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATCCATTCCATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCtt                                                                                                                                           >  1:87544/1‑250 (MQ=255)                                                                                                   cAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGc                                                                                                                                      >  1:318744/1‑251 (MQ=255)                                                                                                    aGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGcc                                                                                                                                     >  1:601298/1‑251 (MQ=255)                                                                                                    aGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGcc                                                                                                                                     <  1:237410/251‑1 (MQ=255)                                                                                                     ggggggATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATTCTAGTTTTTAGACTAGGCATTGGAGAACAGATGATTGATGTCTTAGGGCCg                                                                                                                                    <  1:548670/251‑1 (MQ=255)                                                                                                        gggATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGTCTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCgg                                                                                                                                   >  1:354236/1‑249 (MQ=255)                                                                                                                 aGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAATCGCAGa                                                                                                                        <  2:446011/251‑1 (MQ=255)                                                                                                                                   ttatttatATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACAGACGTAAGGCGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCACCAGACAACCAATATCACTTAAATAAGTGCTAGTCTTAAAACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGGGAAACGCACACGGCGTACCACACAGGa                                                                                                       >  1:698184/1‑250 (MQ=25)                                                                                                                                     atttatATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCACTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGaaaa                                                                                                    <  2:518381/251‑1 (MQ=255)                                                                                                                                                  cAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGtt                                                                                       >  1:199043/1‑251 (MQ=255)                                                                                                                                                  cAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGAGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAATTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGCACCACACAGGAAAAGATAGCAATTGtt                                                                                       >  1:375371/1‑251 (MQ=255)                                                                                                                                                         aaaGTAACCTCATAAAAAATCCTGTACTCACATGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTcagc                                                                                   >  1:361432/1‑248 (MQ=255)                                                                                                                                                                  tCATAAAAAATCCTGTACTCACAGGGTGATGCGGGCTAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGAGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGAGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGaa                                                                        >  1:34510/1‑250 (MQ=255)                                                                                                                                                                  tCATAAAAAATACTATACTCAAAGGGTGATGAGGGTTAACTGACGTAAGGAGTGCTGCAGGGATTAGATGGTCCCTTGTAGACTGGCACCCTGACTCTCAAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGCGAAACGCAGACGGCGTACCACACAGGCAAAGATCGCAATTGTTACGCAGAGCTTGGaa                                                                        >  2:117048/1‑250 (MQ=17)                                                                                                                                                                      aaaaaaTCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCTCTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTTAACCggg                                                                   <  2:90130/251‑1 (MQ=255)                                                                                                                                                                          aaTCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGTGATTTGATGGTCCCTTGTAGTCTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTg                                                                                                                                                                                                   <  2:104019/119‑1 (MQ=255)                                                                                                                                                                          aaTCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGATGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTg                                                                                                                                                                                                   >  1:104019/1‑119 (MQ=255)                                                                                                                                                                             ccTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACg                                                            <  1:347581/251‑1 (MQ=255)                                                                                                                                                                             ccTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACg                                                            >  1:225118/1‑251 (MQ=255)                                                                                                                                                                             ccTGTACTAACAGGGTGATGCAGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACg                                                            >  2:621910/1‑251 (MQ=255)                                                                                                                                                                                   cTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTcc                                                      >  1:458902/1‑251 (MQ=255)                                                                                                                                                                                       caGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGACGGTCCCTTGTAGACTGGCCCCCTGCATCTCCAGCCAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGCGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGCCGGCGTACCACAACGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCg                                                  >  1:52461/1‑251 (MQ=17)                                                                                                                                                                                            tGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGCACCGGGGATGACGGTCTCCCTCGTTGcc                                             >  2:635616/1‑251 (MQ=255)                                                                                                                                                                                                   ggATAACTGACGTAAGAAGTGCTGGAGGCGTTTGATGGTCACTTGTAGACTGGGACCCGGAATCTCCCGACGACCAATATCACTTAAATAGGAGATAGTATTGATACTAGTTTTTAGACTAGTCATTGGAGAACCGATGAGTGATGTCTTAGGGACGGAGAAACGCAGACGGAGTCCCACACAGGAAAAGATCGCAATGGTTCAGCAGAGCTTTGAACCGTGGATGACGATATCCCTCGTTGCCCgaccac                                      >  2:93243/1‑246 (MQ=14)                                                                                                                                                                                                         cTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGgtg                                >  1:79222/1‑251 (MQ=255)                                                                                                                                                                                                           gACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGCTCGCACTTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGgtgt                               >  1:487772/1‑250 (MQ=255)                                                                                                                                                                                                                aaGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGGCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTagcagc                         <  2:318744/251‑1 (MQ=255)                                                                                                                                                                                                                       gctgcATGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGTGAAACGCATACGGCGAACCACACAGGAAAAGATCGCAATTGTTCACCAGAGCTGTGAACCGGGGAGGACGGTCTCCCTCGATGCCCGGCAACAAGGTGTATGAGccagccag                  <  2:87544/251‑1 (MQ=14)                                                                                                                                                                                                                          gcAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGtt                <  2:192790/250‑1 (MQ=40)                                                                                                                                                                                                                           cAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTAt              <  2:30426/251‑1 (MQ=39)                                                                                                                                                                                                                                 tttGATGTTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCACCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTctct        >  2:184571/1‑251 (MQ=21)                                                                                                                                                                                                                                    gATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTgg      <  1:621910/250‑1 (MQ=35)                                                                                                                                                                                                                                         tCCCTTGTAGACTGGCCCCCTGAATCTCCAGACCACCAATATCACTTAAATAAGTGATAATCTTAATACTAGTTTTTAGCCTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCACGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTa  >  2:627204/1‑249 (MQ=12)                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                  CATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTA  >  NC_000913/4497942‑4498422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.