New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2344409	27 (0.390)	5 (0.070)	5/482	3.8	15.8%	intergenic (‑240/+185)	yfaL/ypaB	putative autotransporter adhesin YfaL/protein YpaB
	?	NC_000913	= 3131340	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATCCGCATATTAATCTAACCATCATTTTCTATAAGACGGCGTATTTAATCGCATTATACGATATGGAATATCTTTCTTTTGTAAATTGTTCAACCCGGTGCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGATACATCAGATTATGTGATGACTCGTGCTTAGATCAATTTTTGCAATCATTAGCAAAAAGATTAATAAGCCATCTATATCAATTTATCTAACCTATTATGCCGTTCAAGAAATCGCCGAACAGTTATTTTTAACAAATTTTTCTCTTCCCATTGACTTTCC  >  NC_000913/2344161‑2344650                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                  aaTCCGCATATTAATCTAACCATCATTTTCTATAAGACGGCGTATTTAATCGCATTATACGATATGGAATATCTTTCTTTTGTAAATTGTTCAACCCGGTGCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGc                                                                                                                                                                                                                                                  <  2:266583/250‑1 (MQ=255)                  aaCCATCATTTTCTATAAGACGGCGAATTTAATCGCATTATACGATATGGAATATCTTTCTTTTGTAAATTGTTCAACACGGTGCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTAAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAAt                                                                                                                                                                                                                                >  2:332948/1‑251 (MQ=255)                   aCCATCATTTTCTATAAGACGGCGTATTTAATCGCATTATACGATATGGAATATCTTTCTTTTGTAAATTGTTCAACCCGGTGCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATa                                                                                                                                                                                                                               <  1:99450/251‑1 (MQ=255)                                            aTTTAATCGCATTATACGATATGGAATATCTTTCTTTTGTAAATTGTTCAACCCGGTGCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATcaac                                                                                                                                                                                                       >  1:685339/1‑250 (MQ=255)                                                aaTCGCATTATACGATATGGAATATCTTTCTTTTGTAAATTGTTCAACCCGGTGCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAAtct                                                                                                                                                                                                  <  1:90830/251‑1 (MQ=255)                                                 aTCGCATTATACGATATGGAATATCTTTCTTTTGTAAATTGTTCAACCCGGTGCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAAtctc                                                                                                                                                                                                 >  1:208299/1‑251 (MQ=255)                                                   cGCATTATACGATATGGAATATCTTTCTTTTGTAAATTGTTCAACCCTGTTCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATGTCGCCATCAACAATCTCtt                                                                                                                                                                                               <  2:203513/251‑1 (MQ=255)                                                    gCATTATACGATATGGAATATCTTTCTTTTGTAAATTGTTCAACCCGGTGCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTGCGCCATCAACAATCTCTTa                                                                                                                                                                                              <  1:175585/251‑1 (MQ=255)                                                         ataCGATATGGAATATCTTTCTTTTGTAAATTGTTCAACCCGGTGCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTTACAtt                                                                                                                                                                                          <  2:559342/250‑1 (MQ=255)                                                                       atCTTTCTTTTGTAAATTGTTCAACCCGGTGCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTATCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTCACATTCGCTTATATATTGa                                                                                                                                                                            <  1:474147/250‑1 (MQ=255)                                                                                 tGTAAATTGTTCAACCCGGTGCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGa                                                                                                                                                                  <  1:162426/250‑1 (MQ=255)                                                                                   tAAATTGTTCAACCCGGTGCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGATAc                                                                                                                                                               >  1:219594/1‑251 (MQ=255)                                                                                                   gTGCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGATACATCAGATTATGtgatt                                                                                                                                               >  2:190051/1‑250 (MQ=255)                                                                                                                                                     aTTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGaa                                                                                                                                                                                                                            <  1:611131/124‑1 (MQ=255)                                                                                                                                                     aTTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGaa                                                                                                                                                                                                                            >  2:611131/1‑124 (MQ=255)                                                                                                                                                       tCAAGTAAATACCCTACAGCGATCTCCGTTATCTTTCACCTACATTACAGTCATGCATCCTTTTCTTATACTATCAAGTATATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGCAAACAACCATTTCGCCATCAACAATCTCTTACATTAGCTTATATATTGACCACAACTGCACCATAAGATTCTGTGATGATTCGTGCTTAGATCAATTTTTGCAATCATTAGCAAAAAGATTAATAAGccc                                                                                           >  2:79474/1‑250 (MQ=255)                                                                                                                                                            ttAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGATACATCAGATTATGTGATGACTCGTGCTTAGATCAATTTTTGCAATCATTAGCAAAAAGATTAATAAGCCATCtat                                                                                      >  2:403963/1‑251 (MQ=255)                                                                                                                                                                              atCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGATACATCAGATTATGTGATGACTCGTGCTTAGATCAATTTTTGCAATCATTAGCAAAAAGATTAATAAGCCAGCTATATCAATTTATCTAACCt                                                                     <  2:643520/250‑1 (MQ=255)                                                                                                                                                                                          tAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACATCCATTTCGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGATACATCAGATTATGTGATGACTCGTGCTTAGATCAATTTTTGCAATCATTAGCAAAAAGATTAATAAGCCATCTATATCAATTTATCTAACCTATTATGCCGTTc                                                         <  1:385227/250‑1 (MQ=255)                                                                                                                                                                                                          cATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGATACATCAGATTATGTGATGACTCGTGCTTAGATCAATTTTTGCAATCATTAGCAAAAAGATTAATAAGCCATCTATATCAATTTATCTAACCTATTATGCCGTTCAAGAAATCGCCGAAc                                          >  2:548974/1‑249 (MQ=255)                                                                                                                                                                                                              aataatTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAAAAATAACCGAATAGAAAACAACCATTTAGCCATCAACAATATCTTACATTCGATTATATATTGACCACAACTGATACATCAGATTATGTGATGACTCGTGCTTAGATCAATTTTTGCAATCATTAGCAAAAAGATTAATAAGCCATCTATATCAATTTATCTAACCTATTATGCCGTTCAAGAAATCGCCGAACAGTTAt                                    >  1:264128/1‑251 (MQ=255)                                                                                                                                                                                                                   ttttCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTAGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGATACATAAGCTTATGTGATGACTCGTGCTTAGATCAATTTTTGCAATCATTAGCAAAAAGATTAATAAGCCATCTATATCAATTTATCTAACCTATTATGCCGTTCAAGAAATCGCCGAACAGTTAttttt                                >  1:341357/1‑250 (MQ=255)                                                                                                                                                                                                                    tttCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATCACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGATACATCAGATTATGTGATGACTCGTGCTTAGATCAATTTTTGCAATCATTAGCAAAAAGATTAATAAGCCATCTATATCAATTTATCTAACCTATTATGCCGTTCAAGAAATCGCCGAACAGTTATTTTTa                               >  1:653428/1‑250 (MQ=255)                                                                                                                                                                                                                     ttCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGATACATCAGATTATGTGATGACTCGTGCTTAGAt                                                                                                                                 <  1:280549/151‑1 (MQ=255)                                                                                                                                                                                                                     ttCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGATACATCAGATTATGTGATGACTCGTGCTTAGAt                                                                                                                                 >  2:280549/1‑151 (MQ=255)                                                                                                                                                                                                                                            aCAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGATACATCAGATTATGTGATGACTCGTGCTTAGATCAATTTTTGCAATCATTAGCAAAAAGATTAATAAGCCATCTATATCAATTTATCTAACCTATTATGCCGTTCAAGAAATCGCCGAACAGTTATTTTTAACAAATTTTTCTCTTCCCATTGACt      <  1:1298/251‑1 (MQ=255)                                                                                                                                                                                                                                                aaTGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGATACATCAGATTATGTGATGACTCGTGCTTAGATCCATTTTTGCAATCATTAGCAAAAAGATTAATAAGCCATCTATATCAATTTATCTAACCTATTATGCCGTTCAAGAAATCGCCGAACAGTTATTTTTAACAAATTTTTCTCTTCCCATTGACTTTcc  >  2:577247/1‑251 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                  AATCCGCATATTAATCTAACCATCATTTTCTATAAGACGGCGTATTTAATCGCATTATACGATATGGAATATCTTTCTTTTGTAAATTGTTCAACCCGGTGCAATGGCTATTTTGTTATTATTTGATGAATAATATCAGTGCGTCATAATTCAAGTTAATAACCTTCAGGGATATCAGTTATATTTAAACTAAATTAAAGTCATGAATAATTTTCTTATAATATAAGGTAAATTAACAAAATGGCTTAGCATTTAACAATAACCGAATAGAAAACAACCATTTCGCCATCAACAATCTCTTACATTCGCTTATATATTGACCACAACTGATACATCAGATTATGTGATGACTCGTGCTTAGATCAATTTTTGCAATCATTAGCAAAAAGATTAATAAGCCATCTATATCAATTTATCTAACCTATTATGCCGTTCAAGAAATCGCCGAACAGTTATTTTTAACAAATTTTTCTCTTCCCATTGACTTTCC  >  NC_000913/2344161‑2344650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.