| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 295,887 | Δ85,373 bp | IS2‑mediated | [intF]–[yaiX] | 77 genes [intF], yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, matA, ykgL, ykgO, ykgM, ykgR, insE1, insF1, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH, betA, betB, betI, betT, yahV, pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL, frmB, frmA, frmR, yaiO, [yaiX] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 295887 | 382359–381258 | 85372–86473 | 39 [0] | [6] 7 | [intF]–[insD1] | [intF],yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,matA,ykgL,ykgO,ykgM,ykgR,insE1,insF1,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH,betA,betB,betI,betT,yahV,pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL,frmB,frmA,frmR,yaiO,yaiX,insC1,[insD1] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 295886 | 0 (0.000) | 39 (0.560) | 38/486 | 0.7 | 100% | coding (1211/1401 nt) | intF | putative phage integrase |
| ? | NC_000913 | 381260 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
TCTATCTTGATCAATAGTTGATGATATTTTGTAATATGTTGATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGTACCAAAACTACGACGTAAACCGTGAAGGCTGATATGTGGTAACTCAGCCAGCACTAATGCTCTGTTGTGCGCTGAACGCGGCTCAATAATTTTGCCACTTTTACTGTTACTTCTGAAAACCCAACCCTCCTTATTTACGTCAGAATTTGGGGATTGCGCTAGTACATTTAACAATTCAGAAACATAAGGAGTGAGAGGGATGATACGTTCACCTTCGATCTTGTCTTTAATTCGCATGCTTGACCAT > NC_000913/295642‑296134 | tctatctTGATCAATAGTTGATGATATTTTGTAATATGTTGATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagact > 1:409836‑M1/1‑245 (MQ=255) gTTGATGATATTTTGTAATATGTTGATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctcc < 1:608781‑M1/251‑23 (MQ=255) gTTGATTTTTAATGGACTCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGAGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACATCAACCCACTCGGCCAAAGtagacaggccccctgaatatccagacacccaatatcccttaa > 2:162700‑M1/1‑208 (MQ=255) gATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataa < 1:612285‑M1/251‑47 (MQ=255) aaTGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatag < 1:425629‑M1/251‑54 (MQ=255) cAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaata < 1:151805‑M1/251‑62 (MQ=255) aaCGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatac > 1:555171‑M1/1‑189 (MQ=255) atatCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACACACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtt > 1:360823‑M1/1‑184 (MQ=255) aCGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttaga < 1:288078‑M1/251‑74 (MQ=255) ggTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGAGATAGAGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATAACAGTGGAAAATTCAACCCACGCGGACAAAGtagactggccccctgaagatccagacaaccaatatcacttaaataagagagagtcttaatactagtttttagactagacattgg > 1:486951‑M1/1‑164 (MQ=255) gCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCCCTCGGCCAAAGtagactggccctctgaatctccagacaaccaatatctcttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgat < 2:378696‑M1/250‑97 (MQ=255) gCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgatt > 2:533784‑M1/1‑154 (MQ=255) cTTCATTTACGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGAGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattg > 2:573450‑M1/1‑153 (MQ=255) ttCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttattactagttttta > 2:499462‑M1/1‑152 (MQ=255) tCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGATGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCACAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgat > 1:491567‑M1/1‑151 (MQ=255) aaGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtctt > 1:539349‑M1/1‑145 (MQ=255) tGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagcctggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccgg > 1:177854‑M1/1‑137 (MQ=255) ttCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGACCTTCAACCCACTCGGCCAAAGtagactggccccctgaatctcaagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgc > 1:416609‑M1/1‑127 (MQ=255) tGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgt > 1:428967‑M1/1‑121 (MQ=255) ttttCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtac > 1:119723‑M1/1‑116 (MQ=255) ttttCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtac < 2:119723‑M1/248‑133 (MQ=255) cGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggcgaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaat > 1:97425‑M1/1‑98 (MQ=255) ggACGACTGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGGCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaatt < 1:277307‑M1/251‑155 (MQ=255) ggACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaatt < 1:418368‑M1/251‑155 (MQ=255) acgacgGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgt > 1:527729‑M1/1‑95 (MQ=255) cgacgGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggataaacgcagacggcgtaccacacaggaaaagatcgcaattgtt < 2:623518‑M1/251‑158 (MQ=255) tGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggctgacggtct > 1:515058‑M1/1‑63 (MQ=255) ggggttgtgtCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctc < 2:527729‑M1/247‑190 (MQ=255) ttGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctc > 1:180063‑M1/1‑58 (MQ=255) gtCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaagaagtgatagtcttaatactagttgttagactagtcattggagaacagatgatggatgtcttagggccggagaaacgcagacggtgtaccacacaggaaaagatcgcaagtgtgcagcagagcgttgaaccggtgatgacgttctgcgtcgtt < 2:699163‑M1/250‑197 (MQ=255) aaTACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagac < 2:48554‑M1/109‑75 (MQ=255) aaTACCAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagac > 1:48554‑M1/1‑35 (MQ=255) cAGTGGGAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagcca < 1:533784‑M1/251‑222 (MQ=255) aGTGGGAACTTCAACACACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccag < 2:360823‑M1/251‑223 (MQ=255) ggAACTTCAACCCACTCGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccag < 2:137569‑M1/251‑227 (MQ=255) aaCTTCAACCGACTCGGACAAAGtagactggccccctgcatctcccgacacccaatatcacttaaataagagaaagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgaacttgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagcc > 2:677547‑M1/1‑23 (MQ=255) cGGCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttgttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccagttatttctctggcg < 2:428967‑M1/249‑241 (MQ=255) gCCAAAGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcagtggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcggtgcccggcaacatggtgtagcagccagccagttatttctctggcgtaag < 1:360259‑M1/251‑245 (MQ=255) aGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccagttatttctctggcgtaagcaat < 2:620471‑M1/250‑249 (MQ=255) | TCTATCTTGATCAATAGTTGATGATATTTTGTAATATGTTGATTTTTAATGGAATCAACGCATATCAACGTTGTTTTTTATGGTAATACCTGCTTCATTTAAGATCCATGTCTCAATTTTCTCGTGCCATTTTCGTAACAGATCTAACGGACGACGGCGATAGTGTTTTTCGGCAAGAGCGCTGGGTTTGTGTCCCATAATTTGAGCAACAATACCAGTGGGAACTTCAACCCACTCGGCCAAAGTACCAAAACTACGACGTAAACCGTGAAGGCTGATATGTGGTAACTCAGCCAGCACTAATGCTCTGTTGTGCGCTGAACGCGGCTCAATAATTTTGCCACTTTTACTGTTACTTCTGAAAACCCAACCCTCCTTATTTACGTCAGAATTTGGGGATTGCGCTAGTACATTTAACAATTCAGAAACATAAGGAGTGAGAGGGATGATACGTTCACCTTCGATCTTGTCTTTAATTCGCATGCTTGACCAT > NC_000913/295642‑296134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |