| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 98.5% | 235.9 / ‑4.6 | 68 | intergenic (+589/+167) | rtcR/glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (29/38); total (29/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
TTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATG‑CGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTG > NC_000913/3560208‑3560693 | ttcttTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATG‑CGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGACCTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGcgc > 1:369455/1‑248 (MQ=255)ttcttTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATG‑CGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGcgc > 1:457707/1‑248 (MQ=255) cttTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATG‑CGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGcgcagg > 2:569655/1‑246 (MQ=255) ttgaccttCAACGTGTTAGCAACGGTGAGATGGTTGGTAACAAAG‑CGCAATTGGCTGTGATTGAGCAGGGCGGCCGCTCCCGCTTCGGGGGTGGGGCCGATATCGAAAAACAGCGT‑CGAGCCATGGGGGATTTGGTCCGCCACTTGGCGGGCGATGCTCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑GGGcgcag < 1:100671/241‑5 (MQ=255) cATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATG‑CGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGCACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCCGGATCAGGt > 2:519049/1‑251 (MQ=255) cATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATG‑CGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGt > 1:386656/1‑251 (MQ=255) aacgtgtaagaaaggtgggtatttttgGTGA‑AATGGCGCAATTTGCTGTGATTGGCCAGTGCGGGCTCTCCCTCTCCCGGCGGGTTCCCAATATCGATAAACAGCGG‑CGCGCCATGGGGGATTTGTTCCGCCCCTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTTTT‑AACCGAACTGGAAGT‑CAGCGCCGCACCGCCATGT‑TGGCGCAGGATCAGGTTTTg < 2:15814/227‑1 (MQ=255) aCGTGTTAGCAACGTTGAGATTGTTGGTGACAATG‑CGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGc > 2:563827/1‑251 (MQ=255) gttagacaCGTTGAGATAGATGGTGACAATG‑GGCAAATGGCTGAGCTTGAGCAGTGCGCGCGCTAACGCTTACGGCGTGGTGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGCTTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTAGGACTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑ACCCGAACTGGAAGG‑CAGCGCAGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCg > 2:640313/8‑251 (MQ=255) aaCGTTGAGATTGTTGGTGACAATG‑CGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCt > 1:413120/1‑251 (MQ=255) gggACAATG‑CGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTGCCGGCGTGGTGCCGATATCGATAAACAGCGT‑CGAGCCATGGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTg < 1:470203/238‑1 (MQ=255) gTGACAATG‑CGCAAATTGCTGTGATTGCGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATCTCGATAAAACGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑CACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTg > 2:470203/1‑240 (MQ=255) gTGACAATG‑CGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCgcggcg > 1:187619/1‑251 (MQ=255) g‑cgcAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCt > 2:220159/1‑251 (MQ=255) gacaatttGCTGTGATTGAGCAGTGCGTGCGCTCCCGCTTCCGGCGTGGGGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTg < 1:533876/245‑1 (MQ=255) gcAAATTGCTTTGATTGAGCAGGGCGTGCGTTACCGCTTCGGGCGTGGTGCGGATACCGATAAACAGCGT‑CGAGCCATTGGGGTTTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑ACCCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGc < 1:610261/251‑1 (MQ=255) aaaTTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGGGGTGCCGATATCGATAAACAGCGG‑CGGCCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCgg < 1:159614/251‑1 (MQ=255) gATTGAGCAGCACGCGCGCCACAGCTTACTGCGTGGAGCCGACCTCGATAACCCGCGT‑CGAGCCATTGGTGATTTGCTCCGCCACTTTGAAGGCGATGAGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑ACCCGAACTGGCAGG‑CAGCGCCGCACAGCCATGC‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGACGCGGCGAATAGACTGCGGGCTgcaggcg > 2:472699/1‑245 (MQ=255) ttGAGCAGTGCGTGCGCTACCGCTTCCGGCGAGGTGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGgaga > 2:175527/1‑250 (MQ=255) gtggctccccctcccgttacgggtgtggtgCTGATATCTAAAAACAGCGC‑GGCGCTATTGGGGTTTTTCCCCGCCACTTTGCGGGCGTTGCGCTCTTTTTCTTCGGTCGGGGTGG‑CCTTGGGATCGTGCCCCGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCGGCCCCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGctc < 2:60090/227‑1 (MQ=255) cgcccccTTCCGGCTTGGTGCCAATACCGATAAACGGCGC‑GGAGCCATGGGGGATTTGCTCCGCCCCTTTGCGGGCGATGCGCTCTTTTCCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGctct < 1:584166/245‑1 (MQ=255) cccGCTTCCGGGGGGGTGCCAAATTGGATAAACAG‑GTGCGAGCCTGTGGGTATTTGCTCGGCCGCTTTGCGGGCGATGCGCTCGTTTCCTTCGGTTGGGGGGG‑CTTTGGTACCGTTCCAGGGCGTGTT‑AACCGAACGGGAATG‑CGGGGCCGCTCCGCCATGA‑TGGCGCAGGAGCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCTAATAGTCTGCGGGCGGACGGAGAAATGCTCTACCAGCTCTTc < 2:303105/250‑1 (MQ=255) aCCGCTTCCGGCGTGGGGCCAATATCGATAAACCGCGT‑CGAGCCAGTGGGGATTTGCTCCGCCACTTTGCGGGCGTTGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGctct < 1:5987/249‑1 (MQ=255) ccgctccgggtgtggtccggATATCGAAAAACAGCGT‑CGACCCTTTGGGGTTTTGCTCCGCCACTTGGCGGGCGATGCTCTCTTTTTCTGCGGTCTGGGTGG‑CCTTGCTATCGTGCCACGGCGTTTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCg < 2:541543/232‑1 (MQ=255) gCTTCCGGCGTGGTGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGt > 1:542315/1‑251 (MQ=255) atCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGtt > 2:580081/1‑251 (MQ=255) gATAAACAGCGG‑CGGGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTaa < 1:397975/251‑1 (MQ=255) aacggcgccgggCCATGGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg < 1:308595/240‑1 (MQ=255) caccggggaccaagtGGGGTTTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTGTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTA‑AACCGAACGGGAGGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTGCGGTACTGACATAACCCTGCTGTTTAACCAGtt < 1:43843/237‑1 (MQ=255) cGT‑CGGGCCATGGGGGATTGGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGa < 1:563827/251‑1 (MQ=255) cGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGAAGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACAAGTTCGata > 1:213150/1‑250 (MQ=255) ggtttgcgtccgcccgtttGCGGGGGATGCGGTCTTTTTCTTCGGACGGGGGGG‑CCGTGCGATCGTGCCACGGCGTGTG‑AACCGAACGGGAAGG‑CACCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACGGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGa < 2:437168/235‑1 (MQ=255) aTTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTc < 1:379631/143‑1 (MQ=255) aTTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTc > 2:379631/1‑143 (MQ=255) gCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTGGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGtgtttg < 1:568472/251‑1 (MQ=255) cgttgcgggggtggcgcgttttttCTTCGGTC‑GGGTGGGCGTTGCTCGCGTGCCGCGGCGTTTT‑ATCCGAACTGGAAGG‑CGTGGCCGTACTGCTATGT‑TGGCGCAGGATCAGGTTGTGCTCCGCCAGCTCATTGAGGGCGCGGCGAATTGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACGGACATAACTCTGGTGTTTAACCAGTTCGATAATACCGTTGGGACGTTGtgtttgtt < 2:373952/230‑1 (MQ=255) tttGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGACACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGATCATTGAGGTAGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCCGTTCGATAATAACGTTGTGACGTTGTGTTTGTTTcc > 2:474046/1‑250 (MQ=255) ttGCGGGGGATGCGCTCTTTTTCTTCGGCCTGGGGGG‑CCTGGCGACCGGGCCACGGGGTGTT‑AACCGAACGGGAAGG‑CAGGGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTc < 1:519049/249‑1 (MQ=255) ttGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCAt > 1:433086/1‑251 (MQ=255) gggggCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGGGCCACGGCGTGTT‑ACCCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCAttt < 1:460002/249‑1 (MQ=255) gctggcgtggctctgtttttCTCGGGTCTGGGTGT‑CCTGGCGATCGTCCCACGGCGTGGT‑AAACGACCGGTAAGG‑CAGGGCGGCCCCGCCATGA‑GGGCGCAGGATCAGGTGTTGCTCCGCCAGCTCATTGATGTCGCGGCGATTAGTCTGCGGGCTGACGGATAAATGCGCTTCCAGCTCTTCGGTACTGACATTACCCTGCTGTTTAACCATTTCGATAATACCGTTGTGACGTTGTGTTTTTTTCAtg < 2:96541/235‑2 (MQ=255) gCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCCttt > 2:586128/1‑251 (MQ=255) gCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGGGCCACGGGGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCAtt < 1:647085/250‑1 (MQ=255) gggCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGCTAATACCGTTGTGACGTTGTGTTTGTTTCATTtat > 2:69112/1‑251 (MQ=255) ggCGATGCGCTTTTTTTCTGCGGTCGGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAGGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTtata < 2:369455/251‑1 (MQ=255) gCGATGCGCTTTTTTTTGTCGGTCTGGTGGG‑CCTTGCGAGCGGGCCACGG‑TTGTTTAACCGAATGGGAAGT‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAAGAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATaa < 1:428176/251‑1 (MQ=255) tGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATcc > 1:288066/1‑251 (MQ=255) gttttttttCTTGGGTCGGGGTGG‑CCGTGTGAGCGTGCCACGGCGGGTG‑ACCCTAAC‑GGAAGGGCAGCGCGCCACCGCCATGA‑TGGCGCAGGATCAGGTTGTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTg < 2:424125/247‑1 (MQ=255) ctctTTTTCTTCGGCCTGGGTGG‑CCTTGCGATCTTGCCACGGCGGGTT‑AACCGAACGGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGTTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCt < 1:64532/249‑1 (MQ=255) tctTTTTATTCGGTCTGGGGGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGGCGCGGCGAATAGTCTGCGGGCTGAAGGAGAAATGCTATACACGATCTTCGGTACTGACATAACACTGCTGTTTAAACAGTTCGATAATAACGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTgg > 2:90167/1‑250 (MQ=255) ttttCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAAACCTGCTGTTTAACCAGTTCGATAAAACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAatt > 1:296176/1‑251 (MQ=255) ttcttcGGTCTGGGAGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGGTTTGCTCCGCCAGCTCATGGGGGACGCGGCGAATAGTCTGCGGGCTGACGGAGCACTGCTCGACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTAGATAATACAGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGActtat > 2:668812/1‑251 (MQ=255) tcttcGGGGTGGGTGG‑CCGTGCGACCGTGCCACGGCGTGGT‑AACGTAACGGGTAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAattat < 2:177411/250‑1 (MQ=255) cttcGGTCTGGGTGG‑CCTTGCGATCGGGCAACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTATTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTGATAAATCCCTGGAATTAttt > 2:571541/1‑251 (MQ=255) ggTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTTTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTAttttcgt < 1:638849/251‑1 (MQ=255) gTCTGGGTGG‑CCTTGCGATCGGGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGAACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAAGCCCTGGAATTAttttcgtt < 1:352347/251‑1 (MQ=255) gTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGAAAGG‑CGGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTcgcg < 1:181021/251‑1 (MQ=255) gg‑CCTTGCGATCGGGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CGGCGCGGCACCGCCATGA‑TGGCGCAGGATCAGGTTTGGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCGGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAGCCCTGCTGTGTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCgcgc < 1:472699/250‑1 (MQ=255) g‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCAt < 1:66846/251‑1 (MQ=255) gCGATCGGGCCGCGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGc < 1:613722/251‑1 (MQ=255) aTCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGaa < 1:447804/251‑1 (MQ=255) cggcccACGGCGTGTT‑ACCCGAACTGGAAGG‑CGGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTGCGTTTTCGCGCATTGAGCGaa < 2:163562/245‑1 (MQ=255) cACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATcaaca > 1:571380/1‑250 (MQ=255) ggCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTa > 1:275876/1‑156 (MQ=255) gtgaaCCGAGCTGGATGT‑CCGCGCCGCTCCGCCATGACTGAG‑CAGGATCAGGTTTTGCGCCTCCCGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTTACGGATAAAAGCTCTTCCAGCTCTTCGGTACTGACATAACCCTTCTGTTTAACCAGTTCGATAATACCGTTTTTACTTTGTGTTTGTTTCATTTTTAAATCCCTGGAATTATTTTCGTTATCGCGCAGTGATCGACTcaacataatccttc < 2:406911/248‑10 (MQ=255) atccaaacgggacgg‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCGTCCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCTCCTTGATCGAATCAACAAAATCCATCGc < 2:116707/237‑1 (MQ=255) gAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGACTCAACAAAAGCCATCGCTAAAc > 1:335619/1‑251 (MQ=255) cgggAAGG‑CAGCGCAGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGATCCGCCAGCCCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATTCCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCAGTGAGCGAATCAACAAAAGCCATCGCTAAAcccc < 2:168625/249‑2 (MQ=255) aaGG‑CAGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTCTTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGc > 1:588125/1‑251 (MQ=255) aGCGCCGCACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAcc > 2:318905/1‑251 (MQ=255) cACCGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGAt < 1:474046/251‑1 (MQ=255) cGCCATGA‑TGGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGAtgtg > 1:128658/1‑251 (MQ=255) | TTCTTTTACCATCAACGTGTTAGCAACGTTGAGATTGTTGGTGACAATG‑CGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGT‑CGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGG‑CCTTGCGATCGTGCCACGGCGTGTT‑AACCGAACTGGAAGG‑CAGCGCCGCACCGCCATGA‑TGGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTG > NC_000913/3560208‑3560693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |