Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 4,124,494 IS2 (+) +5 bp intergenic (‑38/+114) cytR ← / ← priA DNA‑binding transcriptional repressor CytR/primosomal protein N'

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3187426NA (NA)35 (1.080) 33/488 0.2 100% noncoding (1331/1331 nt) IS2 repeat region
?NC_000913 4124494 = 0 (0.000)intergenic (‑38/+118) cytR/priA DNA‑binding transcriptional repressor CytR/primosomal protein N'
* ? NC_000913 = 41244980 (0.000)32 (0.990) 30/486 0.2 100% intergenic (‑42/+114) cytR/priA DNA‑binding transcriptional repressor CytR/primosomal protein N'
?NC_000913 4498181 = NA (NA)noncoding (1/1331 nt) IS2 repeat region

AGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGTAAATAACCCACTTCCCGGGCCGCTTTTTCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGC  >  NC_000913/4124245‑4124744
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                          
aGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGATGCGGTAAATAACCCACTTCCCGGGCCGCTTTTTCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCGTTAATGCTCGGGAGACGGTCGCTGTAGAGACATTTGACTTGAGGGCAACGTCTTTCATGGTCGCGCCAGTTTCCTACTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTCCATccc                                                                                                                                                                                                                                                           >  1:160683/1‑250 (MQ=255)
              agagtaacggaatagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACAt                                                                                                                                                                                                                                             >  1:86632‑M2/236‑251 (MQ=255)
                     cggaatagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAAc                                                                                                                                                                                                                                      >  2:309532‑M2/229‑251 (MQ=255)
                     cGCTTGACGTTGAGACCCATAGGCTGCGGTAAATAACCCACTTCCCGGGCCGCTTTTTCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCCCGTCAGGCGTACTACATCCATGTtagactggccccctgaat                                                                                                                                                                                                                                      >  2:304744‑M1/1‑233 (MQ=255)
                                 gagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGa                                                                                                                                                                                                                          <  1:149702‑M2/35‑1 (MQ=255)
                                   gctccttgaaaccgataaagctttactacagcagtatcatgcccaaaccagtcgggttaacggcagcaaataaccttgcagtggcgttcgagcattataacgaatggcatccgcatattgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATa                                                                                                                                                                                                                        <  1:178139‑M2/37‑1 (MQ=255)
                                           gCTGCGGTAAATAACCCACTTCCCGGGCCGCTTTTTCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcactt                                                                                                                                                                                                                >  2:273497‑M1/1‑211 (MQ=255)
                                               cgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggccgcaaagaaccttgcagcggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAAc                                                                                                                                                                                                            >  1:303285‑M2/203‑251 (MQ=255)
                                               cGGTAAATAACCCACTTCCCGGGCCGCTTTTTCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACAGCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaat                                                                                                                                                                                                            <  1:293719‑M1/251‑45 (MQ=255)
                                                gataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACg                                                                                                                                                                                                           <  2:72213‑M2/50‑1 (MQ=255)
                                                   aaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGtt                                                                                                                                                                                                        <  1:309532‑M2/53‑1 (MQ=255)
                                                    aaTAACCCACTTCCCGGGCCGCTTTTTCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtg                                                                                                                                                                                                       >  1:229373‑M1/1‑202 (MQ=255)
                                                     agcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTAc                                                                                                                                                                                                      <  2:131369‑M2/55‑1 (MQ=255)
                                                          gactacatcagtttcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGaa                                                                                                                                                                                                  <  1:286001‑M2/59‑1 (MQ=255)
                                                          gactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAAt                                                                                                                                                                                                 <  2:43667‑M2/60‑1 (MQ=255)
                                                           actacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAAtt                                                                                                                                                                                                <  2:234554‑M2/61‑1 (MQ=255)
                                                                cccGGGCCGCTTTTTCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaat                                                                                                                                                                                            >  1:36435‑M1/1‑190 (MQ=255)
                                                                   gggCCGCTTTTTCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatact                                                                                                                                                                                         >  1:108826‑M1/1‑187 (MQ=255)
                                                                           ttttCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttttt                                                                                                                                                                                  >  1:3647‑M1/1‑179 (MQ=255)
                                                                             ttCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttaga                                                                                                                                                                               <  2:3647‑M1/250‑74 (MQ=255)
                                                                               cAACCCGATTTCGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagacta                                                                                                                                                                            <  2:260565‑M1/251‑77 (MQ=255)
                                                                                     gATTCCGGGAGGCCCGGGCGACTTTATCGGGATTCCTTACTGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCCGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACCTCCCTGTtagactggccccctgaatctccagacaaccaatctcacttatataagtgatagtcttaatactagtttttagactagtcatt                                                                                                                                                                      >  2:36905‑M1/1‑169 (MQ=255)
                                                                                             aacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCg                                                                                                                                                              <  1:127824‑M2/95‑1 (MQ=255)
                                                                                               cggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGAt                                                                                                                                                            <  1:18052‑M2/97‑1 (MQ=255)
                                                                                                  cTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatg                                                                                                                                                          >  1:93143‑M1/1‑156 (MQ=255)
                                                                                                     caaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgatagcagatgtctggaaatataggggcaaatcgaCATGTTTTCTTCACATCGGCAACATTTTTAGCAGAGAGCGCGTGAAAACGTTTACTGGATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCt                                                                                                                                                      <  1:24630‑M2/103‑1 (MQ=255)
                                                                                                           accttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAAGATTGAATTTTTCGATCCGCCTCGCATc                                                                                                                                                <  2:321199‑M2/109‑1 (MQ=255)
                                                                                                                    aTTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctcaagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccgg                                                                                                                                       >  2:255482‑M1/1‑138 (MQ=255)
                                                                                                                            gagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCt                                                                                                                               <  2:242429‑M2/126‑1 (MQ=255)
                                                                                                                                attataacgaaaggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggattgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAAt                                                                                                                           >  2:193547‑M2/122‑251 (MQ=255)
                                                                                                                                 cGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttag                                                                                                                                             >  1:64335‑M1/1‑125 (MQ=255)
                                                                                                                                 cGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttag                                                                                                                                             <  2:64335‑M1/232‑108 (MQ=255)
                                                                                                                                    gagaCGGCCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactcgtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcg                                                                                                                       >  1:267221‑M1/1‑122 (MQ=255)
                                                                                                                                      gaCGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCTCACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagtgccggagaaacgcagacggcgta                                                                                                                     <  1:88967‑M1/251‑132 (MQ=255)
                                                                                                                                         ggTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgca                                                                                                                              <  2:265231‑M1/239‑123 (MQ=255)
                                                                                                                                         ggTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgca                                                                                                                              >  1:265231‑M1/1‑117 (MQ=255)
                                                                                                                                              catccgcatagtgcgctggtttatcgctcgccacgggaatatctgcggcagcgggcgtgtaatgtgttaagtgataacagaggtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATATTTAGCAGATAGCGCGTGAAAACGGTTACAGAATGTTCATGAAAAGTTTGATGAATATTGAATTTTGCGAGCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCa                                                                                                             <  1:136721‑M2/144‑1 (MQ=255)
                                                                                                                                                       cTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaa                                                                                                         >  1:117736‑M1/1‑103 (MQ=255)
                                                                                                                                                       agtgcgctgggttatcgctcgccaagggaatatctgcggcagcgggcttgtaattggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTGTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTGACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCAGGGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCAtt                                                                                                    <  1:22758‑M2/153‑1 (MQ=255)
                                                                                                                                                         tttGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatc                                                                                                    <  2:259598‑M1/249‑149 (MQ=255)
                                                                                                                                                         tttGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatc                                                                                                    <  1:236280‑M1/249‑149 (MQ=255)
                                                                                                                                                              tgggttatcgctcgacacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgactggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCCCCtt                                                                                             >  2:37428‑M2/92‑251 (MQ=255)
                                                                                                                                                                ggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTAc                                                                                           <  1:278857‑M2/162‑1 (MQ=255)
                                                                                                                                                                       gctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATc                                                                                    >  1:183537‑M2/83‑251 (MQ=255)
                                                                                                                                                                           gccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAAAATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGgt                                                                                >  2:159413‑M2/79‑251 (MQ=255)
                                                                                                                                                                            ccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCggtt                                                                               >  1:284725‑M2/78‑250 (MQ=255)
                                                                                                                                                                                         tgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATtgatg                                                                    >  1:149100‑M2/65‑249 (MQ=255)
                                                                                                                                                                                                 ccTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGGCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctcc                                                          <  2:256692‑M1/251‑191 (MQ=255)
                                                                                                                                                                                                    gCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctc                                                       >  1:220647‑M1/1‑58 (MQ=255)
                                                                                                                                                                                                    gCTTCTTCGCTTTCACACACACTCCTCGCCTGGCACGTCAGGCGTACTGCATCCATGTtagactggccccctgaatctccagacaaccaatatcacgtaaataagtgatagtcttaatactagttgttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctcccac                                                       <  2:151331‑M1/251‑194 (MQ=255)
                                                                                                                                                                                                      ttcttcGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgt                                                     >  1:16377‑M1/1‑56 (MQ=255)
                                                                                                                                                                                                       tcttcGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgt                                                     <  2:93143‑M1/250‑196 (MQ=255)
                                                                                                                                                                                                             cTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTtcgactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccgg                                              >  2:103031‑M1/1‑49 (MQ=255)
                                                                                                                                                                                                                    gtgataacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTg                                       <  2:66106‑M2/214‑1 (MQ=255)
                                                                                                                                                                                                                      ccactccTCGCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtcgccctcgttgcccggcaacatggt                                     <  2:16377‑M1/250‑212 (MQ=255)
                                                                                                                                                                                                                        taacagatgtctggaaatataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCa                                     >  2:173483‑M2/34‑249 (MQ=255)
                                                                                                                                                                                                                        cctcctcgCCTGGCACGTCAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgt                                   <  2:108826‑M1/250‑214 (MQ=255)
                                                                                                                                                                                                                           cagctgtctggaaatataggggcaaatccaCATGTTTCCTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAACACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTACTGATGTGTTGCAAgcgc                                >  2:71031‑M2/31‑251 (MQ=255)
                                                                                                                                                                                                                                   ggCACGTCAGGCGTACTACATCCATGGtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgccctgcaacatggtgtagcagccag                          <  2:267221‑M1/249‑223 (MQ=255)
                                                                                                                                                                                                                                          cAGGCGTACTACATCCATGTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccagttatt                 >  1:310310‑M1/1‑20 (MQ=255)
                                                                                                                                                                                                                                          ataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGtgc                 >  2:188135‑M2/16‑251 (MQ=255)
                                                                                                                                                                                                                                          ataggggcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGtg                  <  2:86632‑M2/235‑1 (MQ=255)
                                                                                                                                                                                                                                                gcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGcaac           >  2:178326‑M2/10‑251 (MQ=255)
                                                                                                                                                                                                                                                gcaaatccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGcaac           >  2:101103‑M2/10‑251 (MQ=255)
                                                                                                                                                                                                                                                     tccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAACAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAgc                                                                 >  1:276273‑M2/5‑192 (MQ=255)
                                                                                                                                                                                                                                                     tccaCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAgc                                                                 <  2:276273‑M2/188‑1 (MQ=255)
                                                                                                                                                                                                                                                        aCATGTTTAATTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGAGGGAAGGGTGCAGCAACAATATCTg   >  2:277080‑M2/2‑251 (MQ=255)
                                                                                                                                                                                                                                                         cATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTgc  <  2:51558/251‑1 (MQ=255)
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                          
AGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGTAAATAACCCACTTCCCGGGCCGCTTTTTCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCGGTTTAACCCTCAATCGGATCAACATCCAGCACCCATTTCACCTTACGGGAATCCGGTATTGTATTGATGAGCGCCAGCGTACCGTTAATGATGTGTTGCAAGCGCACGCGGGAAGGGTGCTGCAACAATATCTGC  >  NC_000913/4124245‑4124744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.