| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,638,365 | G→A | S96S (AGC→AGT) | bamB ← | outer membrane protein assembly factor BamB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,638,365 | 0 | G | A | 97.1% | 108.4 / NA | 35 | S96S (AGC→AGT) | bamB | outer membrane protein assembly factor BamB |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (15/19); minor base T (0/1); total (15/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
GCTTCGTTCAGCGCTTGTAACTGACCGTTACTGGTGTGGATTAACACCAGACCGTCGCTGACCACCGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGGCTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCAATGGGGACATCTTTACCACATCTTCTTCGCTGTTAAACAGCGAACAGCCGCTTAAAAGGGT > NC_000913/2638123‑2638610 | gCTTCGTGCAGCGCTTGTAACTGACCGTTACTGGTGTGGATTAACACCAGACCGTCGCTGACCACCGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGa < 1:157105/251‑1 (MQ=255) cGTTCAGCGCTTGTAACTGACCGTTACTGGTGTGGATTAACACCAGACCGTCGCTGACCACCGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGAcc > 1:129058/1‑249 (MQ=255) ttCAGCGCTTGTAACTGACCGTTACTGGTGTGGATTAACACCAGACCGTCGCTGACCACCGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGACTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGAcc > 1:133624/1‑247 (MQ=255) gACCGTTACTGGTGTGGATTAACACCAGACCGTCGCTGACCACCGGGCGCGAAAGTGCTTCACCCGCGACGTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCatcatc < 2:409364/250‑1 (MQ=255) ccGTTACTGGTGTGGATTAACACCAGACCGTCGCTGACCACCGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGc > 1:87950/1‑251 (MQ=255) aCTGGTGTGGATTAACACCAGACCGTCGCTGACCACCGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTc < 1:50886/250‑1 (MQ=255) ggTGTGGATTAACACCAGACCGTCGCTGACCACCGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAgc < 1:183405/250‑1 (MQ=255) ggATTAACACCAGACCGTCGCTGACCACCGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAGGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGTCAGCACAGATTTCTTTGCCATCATCCGCATTCAGCGCtttt > 2:15381/1‑251 (MQ=255) ttAACACCAGACCGTCGCTGACCACCGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACt > 1:182995/1‑251 (MQ=255) cccggACCGTCGCTGACCACCGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTCCCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACTGACCAGATGTCTTTGCCATCATCCGCATGCAGCGCTTTTACTAAAcc < 2:77002/247‑1 (MQ=255) cAGACCGTCGCTGACCACCGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAg < 1:273953/251‑1 (MQ=255) accaccGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCAt > 2:404024/1‑217 (MQ=255) accaccGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCAt < 1:404024/217‑1 (MQ=255) ccaccGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGc > 1:166692/1‑250 (MQ=255) accGGGCGCGACCGTGCTTCACCAGCAACTTTAGTTTGCAATACCACCGTACCATCGCTGGTATTCAGCGCGTCAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACCCCGCCAGTAAGTACTGCAGGCTCTTTCGAGAACCAGCCATCTTTCTCGGCCAGACTGCCAGACCCAATTTCTTTGCCCTCATCCGCATTCAGCGCTTTTCCTAAAcaacagcgatccgttgcat > 2:270118/1‑232 (MQ=255) gctccACCCGTGACGTTTGTTGGCTATGCCGCAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCTTGTTCGCTGCCAATGTAGACATGCCCTCCAGACACTGGCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGATCCAGCCATCTTTCACTGCCAGTCTGACAGACCATATTTCTTTGCCAGCATCCGCATTCAGCGCTTGTACTAAACCAGCGCGGTCCGCTGCATAGACAGCGTTGTCCg < 2:239146/246‑1 (MQ=255) cTTCACCCGCGACTTTATTTTGCCATGCCACAGTACCAACGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTAGCTGCCAATGTAGACTTGCCCACCAGACACGGTCACACCGCCAGAAAATAATGCAAGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGCTTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAACCCAGCGCGTTCCGCTGCATAGCCAACGTTATCCGcc > 2:312023/1‑251 (MQ=255) tCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGcc < 1:345971/249‑1 (MQ=255) gACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGAt < 1:199159/251‑1 (MQ=255) acaGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGtt < 1:131771/251‑1 (MQ=255) gCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGCCAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGc > 2:384569/1‑251 (MQ=255) ggTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTGGCCAATGCCGCTa < 1:88362/250‑1 (MQ=255) aaaCCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACAAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTGGCCAATGCCGCTACCAACGGAAGTGCTc > 1:27940/1‑251 (MQ=255) cgcCTTTCCGCTGCCAATGAAGACATGCCCACCAGACACGGGCCCACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGATACCAACGGAAGTGCTCCACGCCg < 2:318904/251‑1 (MQ=255) gttCGCTGCCAATTTAGACATGCCCACCAGACGCGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGAGTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTc < 2:129058/250‑1 (MQ=255) cAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAAc < 1:48723/251‑1 (MQ=255) aTGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCa > 2:120793/1‑250 (MQ=255) cacGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCAATg > 1:281819/1‑251 (MQ=255) ccGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCAATGGGGACATCtt < 1:291412/251‑1 (MQ=255) gTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCAATGGGGACATCTTTACCACAtct < 1:123247/251‑1 (MQ=255) aTGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCAATGGGGACATCTTTACCACAtcttct < 1:81409/251‑1 (MQ=255) catgCTCTGTAGAGATCCAGCCATCTTTCTCGGCCAGACTGACATACCAGATTTCTTTGCCATCATCCGCATTCAGTGCTGTTACTAAACCAGCGCGGTCCGCTGCATAGACATCGTTGTCTGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAAGGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCAATGGGGACATCTTTACCACATCTTCTTCg < 2:1765/248‑1 (MQ=255) cAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCAATGGGGACATCTTTACCACATCTTCTTCg < 2:160946/251‑1 (MQ=255) ctTTAGAGAACCAGCCATCTTTCTCGGCCAGACTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCAATGGGGACATCTTTACCACATCTTCTTCGCTGtt > 1:348651/1‑250 (MQ=255) ccAGACTGACAGAACAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCAATGGGGACATCTTTACCACATCTTCTTCGCTGTTAAACAGCGAACAGCCGCTTAAAAGGGt > 1:87171/1‑250 (MQ=255) | GCTTCGTTCAGCGCTTGTAACTGACCGTTACTGGTGTGGATTAACACCAGACCGTCGCTGACCACCGGGCGCGAAAGTGCTTCACCCGCGACTTTAGTTTGCCATGCCACAGTACCATCGCTGGTATTCAGCGCGTAAACCTGCGCCTTTTCGCTGCCAATGTAGACATGCCCACCAGACACGGTCACACCGCCAGAAAGTAATGCAGGCTCTTTAGAGAACCAGCCATCTTTCTCGGCCAGGCTGACAGACCAGATTTCTTTGCCATCATCCGCATTCAGCGCTTTTACTAAACCAGCGCGGTCCGCTGCATAGACAACGTTGTCCGCCAGTGCCGGATGAAGATTGGAATAGAAGTTGCCAATGCCGCTACCAACGGAAGTGCTCCACGCCGTGGTCGGCGTAAACTGGTTTTCAACGGTTGGCAATGGGGACATCTTTACCACATCTTCTTCGCTGTTAAACAGCGAACAGCCGCTTAAAAGGGT > NC_000913/2638123‑2638610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |