Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,705,885	G→A	G40D (GGC→GAC)	rsxA →	SoxR [2Fe‑2S] reducing system protein RsxA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,705,885	0	G	A	100.0%	11.4 / NA	6	G40D (GGC→GAC)	rsxA	SoxR [2Fe‑2S] reducing system protein RsxA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (3/3);  total (3/3)

TACAGTTAACCTGTTGTCGCCTGCTCTGGATTAACGGATAATAGGCGGCTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGTCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCGCAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCG  >  NC_000913/1705697‑1706118                                                                                                                                                                                             |                                                                                                                                                                                                                                          ttcagtgatccTGTTGTCGCCTTCTCTGGATTATCGGATAATAGGCGTCTTTTTTATTTCAGGCCGAAAAATGACTGACTTCCTGTTTCTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGGCTCTGTCCGTTTAGGGGGGTTTCCAAAAAACTGGAAACCGCGATGGACATGGGGTTGGCATCAACGTTTGTGATGACGCTGGCGTTTATTTGCGCCTGGCACATCGAt                                                                                                                                                                              <  2:272511/241‑1 (MQ=255)                                            ggcggcTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGTCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGACATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCt                                                                                                                                  <  1:257330/251‑1 (MQ=255)                                                                                                 cGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGTCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGACATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTgc                                                                             >  1:370655/1‑251 (MQ=255)                                                                                                                           tACTGGTCAAGTTTCTCAGTCTCTGTCCGTCTATGGGGGTTTCCACAAAACTGGAAACCGCGATGGACATGGGGCTGGCCACAACGCTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCGCAAAACACGCCCGGTGCTTTAcctt                                                   >  2:55592/1‑249 (MQ=255)                                                                                                                                                           aTGGGGGTTTCCAAAAAACTGGAAACCGCGATGGACATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGCTACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCGCAAAACCAGCCCGGTGCTTTCCCGTCTGCTGGGGATTTTTTTGCCGCTTATcaccac                   >  2:167136/1‑251 (MQ=255)                                                                                                                                                                            aCTGGAAACCGCGATGGACATGGGGCTGGCAACAACGTTTGGGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCGCAAAACCAGCCCGGTGCTTTACCGTCTGCTGGTGATTTTTTTGCAGCTTATCACCACCAACTGTGCAGTGCTCg  <  2:28236/251‑1 (MQ=255)                                                                                                                                                                                             |                                                                                                                                                                                                                                          TACAGTTAACCTGTTGTCGCCTGCTCTGGATTAACGGATAATAGGCGGCTTTTTTATTTCAGGCCGAAAAATGACTGACTACCTGTTACTGTTTGTCGGAACTGTACTGGTCAATAACTTTGTACTGGTCAAGTTTCTCGGTCTCTGTCCGTTTATGGGGGTTTCCAAAAAACTGGAAACCGCGATGGGCATGGGGCTGGCAACAACGTTTGTGATGACGCTGGCGTCTATTTGCGCCTGGCTTATCGATACGTGGATTTTGATCCCACTTAATCTGATTTACCTGCGCACCCTGGCATTTATTCTGGTGATTGCTGTGGTCGTGCAGTTCACCGAGATGGTGGTGCGCAAAACCAGCCCGGTGCTTTACCGTCTGCTGGGGATTTTTTTGCCGCTTATCACCACCAACTGTGCAGTGCTCG  >  NC_000913/1705697‑1706118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑