| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,548,823 | 0 | A | C | 41.3% | 54.2 / 12.7 | 48 | T6P (ACC→CCC) | fimH | type 1 fimbriae D‑mannose specific adhesin |
| Reads supporting (aligned to +/- strand): ref base A (21/6); new base C (1/18); total (22/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.66e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATAAAAACCAGGGGACCGCGCAAAACATCCAGTTAGAGCTACAGGATGACAGTGGCAACACATTGAATACTGGCGCAACCAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTA > NC_000913/4548577‑4549061 | ataAAAACCAGGGGACCGCGCAAAACATCCAGTTAGAGCTACAGGATGACAGTGGCAACACATTGAATACTGGCGCAACCAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTAccc < 1:409333/250‑1 (MQ=255) gaacgcgCAACTCATCCAGTTAGCGCTACAGGATGACAGTGGCAACACATTGAATCCTGGCGCAACCAAACAAGTTCAGGCGGATGATTCCTCACAATCAGCGCACTTACCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGCGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTActg > 2:256162/4‑251 (MQ=255) aCATCCAGTTAGAGCTACAGGATGACAGTGGCAACACATTGAATACTGGCGCAACCAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTCCCCTGTTTGCTGTACTGCTG‑ATGGGCTg < 1:201392/251‑1 (MQ=255) ccAGTTGGAGATACAGGATGAAAGGGGCAACACATTGAATACTGACGCAACCAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGAACTTCACGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTAACCTGTTTGCTGGACTGCTG‑ATGGGCTGGt > 2:264256/1‑249 (MQ=255) aTGACAGTGGCTACACATTGAATTCTGGCGCAACCAAACCAGTTCAGGTGGATGATTCATCACCATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGACACCATTCAGGCCGTGATTAGCATCACCTATCCCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTCTTCACATGTTTGCTGTACTGCTG‑CTGGGCTGGCCGGTAAATGCCTGG‑TCAtt > 2:171853/1‑251 (MQ=255) aTGACAGTGGCAACACATTGAATACTGGCGCAACCAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTGCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCAGTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGGAAATGCCTGG‑TCAtt < 2:405943/251‑1 (MQ=255) cAACACATTGAATACTGGCGCAACCAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTaa > 2:201910/1‑250 (MQ=255) acacATTGAATACTGGCGCAACCAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGACACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAAc > 1:294583/1‑251 (MQ=255) acaTTGAATACTGGCGCAACCAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTAATTAGCATCACCTATACCTACAGCTGAACCC‑GCAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTCAATGCCTGG‑TCATTCGCCTGTAAAACCg > 1:248507/1‑251 (MQ=255) ggcgaaacaaaaccatttCAGGGGGATGATTCCCCAAAATCAGCGCACTCCCCGTTCCAGATAAGAGAATTGACAGTAAAGGGCGGGGCCCCTCAGGGACCCATTCAGGCTGTGATTAGCATCACCTATACCTCCAGCTGACCCC‑GAAGAGATGATGGTAATGAAACGAGTTATTCCCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑CCATCCGCCTGTAAAACCGCCAATGGTAc < 2:122958/233‑1 (MQ=255) aaacaaaaaCAGTTCAGGTGGATGATCCCTCACAATCAGCGCACTCCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATCCCTACAGCTGACCCC‑GAAGAGATGATTGTAATGAAACGAGTTATTCCCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTAt < 1:178870/246‑1 (MQ=255) aaaCAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTAt > 1:130578/1‑251 (MQ=255) aaaCAATTCAGGTGGATGATTCCCCAAAAACAGCGCACTCCCCTTTTCAGGTAAGAGCATGGACTGAAAATGGCGGAGCCACTCAGGGACCCATTCAGTCAGTGATTAGCATCCCCTATACCTACAGTTGAACCC‑GAAGAGAGGGTTGTAATGAAACGATTTATTCCCCTGTTTGCTGTACTGCTG‑AGGGGCTGGCCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTAt < 2:86121/251‑1 (MQ=255) aGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGc > 1:179053/1‑251 (MQ=255) gTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCg > 1:284849/1‑251 (MQ=255) gTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCg > 1:101434/1‑251 (MQ=255) gTTCAGGTGGATAATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGTGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGCGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCg > 1:318691/1‑251 (MQ=255) ggggggATGATTCCTCACAATCAGCGCACTCCCCGTTACAGGTCAGAGCATTGACAGTAAAGGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCCCCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGATTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCTTGG‑TCTTTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTgg < 1:92215/247‑1 (MQ=255) aGGTGGATGACTCCTCACAATCAGCGAACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGAAGCCACTCAGGGAACCCTTCAGGCAGTGATTAGCATCACCTATATCTACCGCTGAACCC‑GAAGAGATGATTGTAAGGAACCGAGTAATAACCAGATTTGCTGGACTGCTG‑ATGGTCGGGTCGGTAAATGCTTGG‑TCATTCGCCTGTAACACCACCAATGACACCGCTATCCCTATTGACGGTgg > 2:224332/1‑251 (MQ=255) gTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGc > 1:250125/1‑250 (MQ=255) tGGATGATTCCTCACAATCAGCGCACTCCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTCCAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTggtcc > 1:42293/1‑248 (MQ=255) atgatTCATCACAATCAGCGCCCTTCCCGTTACAGGTCAGCGCATTGACAGTAAATGGCGGAGCCACTCAGTGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAATGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCACTGGTACCGCTATCCCTATTGGCGGTGGccgacc > 1:322444/1‑246 (MQ=255) gatTCCTCACAATCAGCGCCCTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGAAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTACATGCCTGG‑TCATTCGCCTGTAAAACCGCCACTGGTACCGCTATCCCTCTTGGCGGttggcgctcc > 2:95263/1‑241 (MQ=255) gatTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCGGCGccc > 1:77574/1‑250 (MQ=255) cgcATTTCCCGTTACAGGTAAGAGCATTGAAAGAAAATGGAGGAGCCACTCAGGGAACCATCCAGGAATTGATTAGAATCACTTATACCTACAGCTGACCCC‑GAAGAGATGATGGTAATGAACCGAGTTATTACCCTGTTTGCTGTACTTCTG‑ATGGGCTGGTCGGTAATGGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCt < 1:284059/251‑1 (MQ=255) cACTTCCCGTTACAGGTCAGAGCATTGAAAGTAAATGGCGGAGCCACTCAGGGACCCTTTCAGGCAGTGATTAGCATCCCCTATACCTACAGCTGACCCA‑GAGGAGATGATTGTAATAAAACGAGTTATTCCCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCTTTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTg < 2:109714/251‑1 (MQ=255) tacagtccAGAGCATTGACAGTAAAGGGCGGAGCCACCAAGGGACCCATTCAGGCAGTGATTAGCATCACTTATACCTACAGCTGACCCC‑GAAGGGATGATTGTAATAAAACGAGTTATTCCCCTGTTGGCTGTACTGTTG‑ATGGGCTGGTCGGTAAATGCTTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCcgtcg < 1:117343/243‑1 (MQ=255) ggTCAGAGCATTGCCAGTAACTGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTCCAGCTGAACAC‑GACGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCCGCGCCACTGTTTAAGTAAACCCTGCGCCCCTCGTgttt > 2:73562/1‑248 (MQ=255) cAGATCATGGACATTAAAGGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATCCCTCCAGCTGAACCC‑GAAGTGATGATTGTAATGAACCGAGTTATTCCCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGTTAATTGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCTCCCGTCGTGAAtgt < 1:118933/250‑1 (MQ=255) aTTGACAGTAAAGGGAGGCGCCTCCCAGGAAACAATGCAGGCGGTGATTACCATCCCCTATCCCTCCAG‑TGGACCCTAAATAGATGATTGTAAGGAAACGATTAATCTCCCTGTTCGCGTTACGGCTA‑AGGGTCTGGTCGGAAATTGCCTGG‑TCTTTCGCCAGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAGCCTTGCGCCCGTCGTGAATGTGGGGCaa < 1:171853/251‑1 (MQ=255) gACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCCGCGCCAATGGTTTTGTAAACCTTTCTCCCGCCGGGGATGTggggggaaa > 2:346328/1‑245 (MQ=255) aaaaTGGCGGAGCCACTCAGGGAACCATTCAGGCAGTAATAAGCATCACCTATCCCTACAGCGGAACCC‑GAAGAGATGATTGTAAGGAAACGAGTTATTCCCCTGTTTGTTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCTTGG‑TCATTCCCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGGGAATGTGGGGCAAAACCTGGt < 1:324419/250‑1 (MQ=255) aaaTGGAGGAGCCACTCAGGGAACCATGCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGGTTGGAATGAAACGAGTTATTCCCTTGTTTGCTGTCCTGCGG‑ATGGGCTGGTCGTTAAATGCGGGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTc < 1:61098/251‑1 (MQ=255) cccTCAGGGAACCATCCAGGAAGTGATTAGCATCCCCTATCCCTACAGCTTAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTCCCCTGTTGGCTTTCCTGCTG‑ATGGGCTGTTCGGTAAATGCCTGT‑TCATTCGCCTGAAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATTTGGGGCAAAACCTGGTCGTGGATCTTTCg < 1:346328/249‑1 (MQ=255) cagggatctaatCAGGCAGAGATGAGCATCGCCTATCCCTACATCTAACCCC‑GAAGAGAGGATGGTAATGAAACGAGTTATTCCCCTGTTTGGTGTACTGTGG‑AGGGTGGGGTCGGAAAATGC‑TGGCTCATTCGCCGGAAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCGTGCTCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGAc < 1:257740/238‑1 (MQ=255) gcagtgttagacctCACCTATTCCTACAGCTAAACCC‑GAAGAGATTATTGAAATGAAAGGGTTTATTCCCCTGTTTGCTGTACTGCTG‑AGGGGCGGGTCGGTAAAGGCCTGT‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATa < 2:130578/238‑1 (MQ=255) gaatccccTATACCTACAGCTGAACCC‑AAAGAGATGATTGTAATGAAACGAGTTATTCCCCTGTTTGCTTTACTGCGT‑AGGGGCGGGTCGGTAAATCCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATcc < 1:131444/245‑1 (MQ=255) cctgttaatatcatgtGAACCCTGAAGGGATGATGTTAATGCACCGATTTATACCCCTGTTTTCTGTACTTCGG‑AGGGCCTGGTCTGAAAACTCCGGG‑TCTTCCGCCTTTAAAACCGCCAATGGTACCGCTATCCCTACTGGCGGTGGCAGCGCCAATGTTTATTTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACTCAAATCTGTTGCCATAACGATTAGCCGGaa < 2:294583/236‑1 (MQ=255) atcccTACAGCTGACCCC‑GAAGAGAGGATTGAAATGAAACGTGTTATTCCCCTGTTTGCTGTTC‑GCCGTAGGGGCTGTTCGGTAAAGCCCTGG‑CCATCCGCCTGAAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGGGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAAGCGTTTGCCATAACGATTATCCTGAAAcc < 2:161573/246‑1 (MQ=255) ataCCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCCCAGTTTATTTAAAACTTGCGCCCGTCGTGGATGTGGGGCAAAAACTGGTCGTGGCTCTTTTTCCGCAAATATTTTTCCCGAACAATTATCCCGTAACCAt > 2:248872/1‑251 (MQ=255) cccTACAGCTGACCCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCGGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTa < 1:393754/250‑1 (MQ=255) ccTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCCATGTTTATGTTAACCTTTCGCCCGTCGTGAATGTGGGGCCAAACCTGGGCGTGGGTCTTTCCACGCAAATCTTTTTCCATAACGATTATCCGGAAACCATTAc > 1:55933/1‑251 (MQ=255) aaCCC‑GAAGAGATGATTTTAATAAAACGATTTTTTTCCCTGTTTGCGTTCCTGTTA‑AGGGGCTGTTCGGAAAATTCTTGG‑TCTTCCCCCTGAAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAGCCATTACAGACTATGTc < 1:351177/251‑1 (MQ=255) aaCCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCCGCGCCAATGTTTTTGTAAAACTTTCCCCCCTCGGGAATGTTGGGCAAAACCTGGTCGTGGATCTTTTCACGCCAAACTTTTTCCCTAACGATTTTCCCGAAAcccataaaaactatttc > 1:282577/1‑236 (MQ=255) ccccgaatagagtatTGAAATAAAACGAGTTATTACCGTGTTTGCTGTACGGCGG‑ATGGGCTGTTGGGTAAAGTCCTGG‑TCATCCGCCTGAAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTca < 2:211418/238‑1 (MQ=255) agagATGATTGTAATGAAACGAGTTATTCCCCTGTTTGCTGTACTGTTG‑AGGGGCTGGTCGGTAAAGGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGc < 1:201910/251‑1 (MQ=255) gAAACGAGTTATTCCCTTGTTTGCTTTACTGCTG‑AGGGGCTGGGCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCt < 1:131409/250‑1 (MQ=255) aaaCGAGTTATTCCCCTGTTTGCTGTACTGCTG‑ATGGTCTGGGCGGTAAATCCCTGG‑TTATCCCCTTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTa < 2:146927/251‑1 (MQ=255) | ATAAAAACCAGGGGACCGCGCAAAACATCCAGTTAGAGCTACAGGATGACAGTGGCAACACATTGAATACTGGCGCAACCAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCC‑GAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTG‑ATGGGCTGGTCGGTAAATGCCTGG‑TCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTA > NC_000913/4548577‑4549061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |