New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4366825 =	31 (0.640)	7 (0.140)	7/490	2.9	31.3%	intergenic (‑52/+14)	dcuA/aspX	C4‑dicarboxylate transporter DcuA/small regulatory RNA AspX
	?	NC_000913	= 4378239	0 (0.000)					coding (706/1134 nt)	ampC	beta‑lactamase

GCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGGCCCTGATACATATCGCCGGTTTGCCAGTAGCGAGATTGTGCCAGTTGTATCCCTTGTTGAAGCGTTTTCTCATTGATATCAAGGGGTTTTAAATTGCTTTGCACCCAGCGGGCCATATCTTCAATGGTCGACTTCACACCATAAGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTT  >  NC_000913/4378013‑4378308                                                                                                                                                                                                                                   |                                                                      ggtgccaGGGCAATTTTATTGTCACTGTCGTGAATGTGGCTGTCAGGATGTACTGTCCAGTCCAGCATTTCCCAGCCCAGGCCCTGATACATAGCGCCGGTTTGCCAGTAGCGAGATTGTGCCAGTTGTATCCCTTGTTGAAGCGTTTTCTCATTGATAGCAAGGGGGTTTAAATTGCTTTGCAACCAGCGGGCCATATCTACAAGGGTCGACTTCACACCATAAGCgtactgctcacaagaaaaaaggca                                               >  2:430552‑M2/3‑227 (MQ=255)     ccAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGGCCCTGATACATATCGCCGGTTTGCCAGTAGCGAGATTGTGCCAGTTGTATCCCTTGTTGAAGCGTTTTCTCATTGATATCAAGGGGTTTTAAATTGCTTTGCACCCAGCGGGCCATATCTTCAATGGTCGACTTCACACCATAAGCttactgctcacaagaaaaaaggcacgtc                                           >  1:78610‑M2/1‑223 (MQ=255)            aaTTTTATTTTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGGCCCTGATACATATCGCCGGTTTGCCAGTAGCGAGATTGTGCCAGTTGTATCCCTTGTTGAAGCGTTTTCTCATTGATATCAAGGGGTTTTAAATTGCTTTGCACCCAGCGGGCCATATCTTCAATGGTCGACTTCACACCATAAGCttactgctcacaagaaaaaaggcacgtcatctgac                                    >  1:453086‑M2/1‑216 (MQ=255)                ttatgtgtcctgccgttaaTGATGCTGTCAGGATTTGCCGTCCAGTCCAGCATTTCCCAGCCCAGGCCCTGATACATATCGCCGGTTTGCCAGTAGCGAGATTGTGCCAGTTGTATCCCTTTTTGAGGCGTTTTCTCATTGATATCAAGGGGTTTTAAAGTGCTTTGCACCCAGCGAGCCATATCGACAATGTTCGACTTCACGCCATAAGCgtactgctcacaagaaaaaaggcacgtcatctgacgtg                                 >  2:407355‑M2/10‑212 (MQ=255)                            ccGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGGCCCTGATACATATCGCCGGTTTGCCAGTAGCGAGATTGTGCCAGTTGTATCCCTTGTTGAAGCGTTTTCTCATTGATATCAAGGGGTTTTAAATTGCTTTGCACCCAGCGTGCCATATCTTCAATGGTCGACTTCACACCATAAGCttactgctcacaagaaaaaaggcacgtcatctgacgtgccttttttatttg                    >  1:340126‑M2/1‑200 (MQ=255)                                            cAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGGCCCTGATACATATCGCCGGTTTGCCAGTAGCGAGATTGTGCCAGTTGTATCCCTTGTTGAAGCGTTTTCTCATTGATATCAAGGGGTTTTAAATTGCTTTGCACCCAGCGGGCCATATCTTCAATGGTCGACTTCACACCATAAGCttactgctcacaagaaaaaaggcacgtcatctgacgtgccttttttatttgtactaccctgtacgat    <  1:98668‑M2/251‑68 (MQ=255)                                              gtattTCCCGTCCAGTCCAGTATTTCCCAGCACAGGCCCTGATACATATCGCCGGTTTGCCAGTTGCGATATTGTGCCAGTTGTATCCCTTGTTGAAGCGTTTTCGCATTGATATCAAGGGGTTTTAAATTGCTTTGCACCCAGCGGGCCATATCTTCAATGGTCGACTTCACACCATAAGCttactgctctcaagaaaaaaggcacgtcatctgacgtgccttttttatttgtactaccctgtacgatta  >  2:386033‑M2/3‑182 (MQ=255)                                                                                                                                                                                                                                   |                                                                      GCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGGCCCTGATACATATCGCCGGTTTGCCAGTAGCGAGATTGTGCCAGTTGTATCCCTTGTTGAAGCGTTTTCTCATTGATATCAAGGGGTTTTAAATTGCTTTGCACCCAGCGGGCCATATCTTCAATGGTCGACTTCACACCATAAGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTT  >  NC_000913/4378013‑4378308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.