| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 248,203 | G→A | intergenic (+69/‑2695) | rayT → / → dinB | REP‑associated tyrosine transposase/DNA polymerase IV |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 248,203 | 0 | G | A | 96.0% | 213.0 / NA | 76 | intergenic (+69/‑2695) | rayT/dinB | REP‑associated tyrosine transposase/DNA polymerase IV |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (41/32); minor base C (3/0); total (44/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CATGTTGATTATATTTATATAAATCCAGTAAAGCATGGTTGGGTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCAT > NC_000913/247970‑248449 | catGTTGATTATATTTATATAAATCCAGTAAAGCAGGTTTGGTTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACTGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGTATAAGGCGttt < 1:373322/250‑1 (MQ=255) gTTGCTTATATTTATATAAATCCAGTAAAGCATGGTTGGGTAAAGCCAGTGAGGGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATAAATTGGGCGGGGGACGTAACGGATTTTAGAGCCGGAGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCAAGCGCGTCTTATCATTCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTAttc > 1:283161/1‑249 (MQ=255) gTTGATTATATTTATATAAATCCAGTAAAGCATGGTTGGGTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGTTAAGCCGGATAAGGCGTTTATGc > 1:50714/1‑251 (MQ=255) ttGATAATATTTATATAACTCCGGTACAGCATGCTTGGGTATAGCACGTGTGTGATTGGCCATTCTAAACGTTCCCTCGCGATATAGCGCGAGGGTTGTATCCCATCGATTGGGAGGGGGACGTAACGGATTTTAGTGCAGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCATGATGCGACGCTAGCGAGTCTTCTCATGCCTACCAACTTGTGCCGGGTCGGTAAGCCGGATAAGGCGTTTATGcc > 2:455341/1‑251 (MQ=255) atttatatAAATCCAGTAAAGCATGGTTGGGTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATAGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCgg > 1:297118/1‑251 (MQ=255) aattatatAAATCCAGTAAAGCATGGTTGGGTAAAGCAAGTGAGTGATTAGCCATTCTCAACGTTCCATCGTGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCgg > 2:52411/3‑251 (MQ=255) ataAATCCAGTAAAGCATGGTTGGGTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGtt < 2:445976/250‑1 (MQ=255) aaaTCCAGTAAAGCATGGTTGGGTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATg < 1:153591/251‑1 (MQ=255) aTCCAGTAAAGCATGGTTGGGTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATgcg < 2:156193/251‑1 (MQ=255) tCCAGTAAAGCATGGTTGGGTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGtt > 1:34335/1‑226 (MQ=255) tCCAGTAAAGCATGGTTGGGTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGtt < 2:34335/226‑1 (MQ=255) ccAGTAAAGCATGGTTGGGTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGTTCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATgcgc > 2:106950/1‑250 (MQ=255) acagcagggaggagTAAAGAAAGTGAGGGATTGGCCATTCTAAACGTTCCATCGCTATGTCGAGCGAGGGTTGTAGCCCAACGGTTGGGCGGGGGACGTAACGGAATTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATg < 2:128374/237‑1 (MQ=37) aaaGCATGGTTGGGTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGc > 1:337977/1‑251 (MQ=255) aaGCATGGTTGGGTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGcc > 1:477670/1‑251 (MQ=255) gCATGGTTGGGTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGCTTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACACACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTg > 2:69241/1‑251 (MQ=255) ggTTGGGTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGc > 1:430792/1‑251 (MQ=255) gTTGGGTAAAGCAAGTGCGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGTTTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCCGTTATGCGCAGATGCCTGATGCg > 1:418976/1‑251 (MQ=255) tAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTg > 1:174970/1‑251 (MQ=255) aGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGgcg > 1:306243/1‑251 (MQ=255) gagtgaTTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGCTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCtt > 1:208322/1‑250 (MQ=255) gtgaTTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATc < 1:388856/251‑1 (MQ=255) tgaTTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATc > 2:16884/1‑250 (MQ=255) gaTTGGCCATTCTCAACGTTCCATCGAGATGTCGCGCGAGGGTTATATACCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGTCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCAt < 2:299743/251‑1 (MQ=255) ttGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGc > 2:186541/1‑251 (MQ=255) ctcAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACt > 1:418008/1‑251 (MQ=255) cAACGTTCCATCGCGATGTCGGGTGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTGAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCGGATGCGTCGCGAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATTGGTAAGCTGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACt < 1:74612/249‑1 (MQ=38) aaCGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTtgt > 1:4425/1‑251 (MQ=255) gTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGcc > 2:248893/1‑251 (MQ=255) gcgATGTCTCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGGTTATGCCGCATCCGTCATGTGTACGCAGGTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTAcgagcccgcgaatatttgcg < 1:455341/251‑20 (MQ=37) gcgATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGt > 1:185400/1‑251 (MQ=255) aTGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTACGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAgg > 2:103364/1‑251 (MQ=255) gAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGACCGGTAGGACGGATa > 2:374180/1‑249 (MQ=255) gggTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGc < 1:346202/251‑1 (MQ=255) tatCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGATAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGAGTTCAc > 1:225514/1‑251 (MQ=255) tatCCCATCGATTGGGCGGGGGACGTAACGGATCTTAGATCCGGGGCGCGAATCATTTCATAATTGAGCGCAGCTGCCTGATGCGAAGCTAGCGCGTCATATCATGCCTCCAAACTTGTGCCGCATCGGTACGCCGGATAAGGAGTTTATGCCGCATCCGGCACTTATGAGCAGATGCCTGCTGCGTCGCTGGCGCGTCTTATCATCCCTACAAACTTCTGCCTGAACGTTCGGACGCATAAGGCGTTCAc > 2:455302/1‑251 (MQ=255) aTCGATTGGGCGGGGGTCGTAACGGATTTTAGGGGCGGGGGGCTTATCAGTTTATAATTGTGCTAAGATGCGTGATGCGACGCTTGCGCGTCTTATCTTGCATGCAAAGTTGTGCCGGAGCGGTAAGTCGGATAAGGCGTTTATGCCGCATCCGGCAGTGATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATTATGCCTACAAACTGGTGCCTGAGCGGTAGGACGGATAAGGCGTGCACGCCGCa < 2:456012/251‑1 (MQ=255) cGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATc > 1:155783/1‑251 (MQ=255) cGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGAGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCCCGCCGCATc > 2:416778/1‑251 (MQ=255) aCGTAATGGATTTTAGTTCCGGTTCGCCTATCATTTCCTAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCTGTAAGCCGTATAAGGCGTTTATGCCGCATCCTGCAGTTATGCGCAGATGTCTGATGCGACGCGGGCGCGTCTTATCATGCCTACAAACTTTTGCCTGAACGGTATGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCa < 2:283880/250‑1 (MQ=25) cGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCAcc < 1:248893/251‑1 (MQ=255) aCGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGAAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGACTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTTGTGCACCAATg > 1:197118/1‑251 (MQ=255) atgttAGTGCCGGGGAGCGTATTATTTCATAATTGTGGGAGGATGCCGGATGCGACGCTTGCGCGTCTTATCAGGCCTACAAACTTGTGCCGGATCGGTAATCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTgg < 2:380232/248‑1 (MQ=37) agtggcgtggAGCGTATCATTTCATAATTGGGCGAAGAGGCTTGATGCGACGCTAGCGCGGCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGAGAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCTCCAATGCTGGATACt < 2:442903/243‑1 (MQ=37) ccGGGGAGCGTATCATTTCATAATTGTGCGCAGAGGCCTGAGGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACa < 1:416778/251‑1 (MQ=255) cGGGGCGCGAATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGGCACCAATGCTGGATACTTACAt > 2:29774/1‑251 (MQ=255) aGCGTATCATTTCATACTTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACACACTTGTGCCGGCTCGGTAAGCCGGATCAGGCGTTTATGCCGCATCCGGCAGCTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTAAAAACTTCAGCCTGAACGGTCGGACAGATAAGGCGTTCACGCCGCATCCGGCAGTTGGGCACCACAGCTGGATACTTACATCAACg > 2:225374/1‑251 (MQ=255) aTCATTTCATCACTGTGCGCAGATGCCTGATGCGACGGTAGAGTGTCTTATCATGCCTACAAACTTGTGCAGGCTCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCCGATGCCTCATGAGACGCTGGCGCGTCTTATCATGCCTCCAAACTTGTGCCAGAACGGTAGGACGGATAATGCGTTCACGCCGCATTCTGCAGTTCAGCCCCACTGCTGGATTCTTAAATCACCGccccc > 2:479319/1‑251 (MQ=255) aTCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGccccc > 1:167820/1‑251 (MQ=255) aTCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGcccc < 1:227395/250‑1 (MQ=255) aTCATTTCATAATTGTGCGCAGATGCATGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACCAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACCCCCCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGccccc > 2:432060/1‑251 (MQ=255) cATTTCATAATCGTGCTCAGATACCTGATGCGACTCTAGCGCGTCTTATCTTGCCTACAAACCTGGGCCGTATCTGTAAGCGTGATAAGGCTTTTTTGCCGCATCGGACAGTTATGCGCAGATGCCTGATGCTACGCTGGCGCGGCGTATCATGCCTACAAACTTGTGCCTGATCGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCGCCAATGCTTTATACTTACATCAACGcccc < 2:295636/248‑1 (MQ=255) aTAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAGCGCCCCCATAATCtt < 2:383844/251‑1 (MQ=255) tgtgCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCCCGTCTTATCATGCCTACCAACTTGTGCCTGAACGGTAGGACGGATAAGTCGTTCACGCCCCATCCGGCAGTTGGGCACCAATGCTGGGTCCTTACATCAAAGCCCCCATAATCTTCacc > 2:302823/1‑248 (MQ=38) gtgCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGGGTCTTATCATGCCTACAAACTTGTGCTTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTc < 1:225374/251‑1 (MQ=255) tgCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTcc > 1:423733/1‑251 (MQ=255) cAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGAAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCt > 1:82724/1‑251 (MQ=255) gCCTGATGCGACGCGAGCGCGTCTTATCATGCCTACAAACTTGTTCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATcc < 1:277963/251‑1 (MQ=255) gATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGTTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCGGGCGCGTCTTATCATGCCTACAAACGTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAAGCTACAACTCCATCTTATCCgg < 2:208322/249‑1 (MQ=37) gATGCGACGCTAGCGCGTCTTATCATGCCGACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCgg < 2:126269/249‑1 (MQ=255) gACGCTAGCGCGTCTTATCATGCCTACACACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTCACATCAACGCCCCCATCATCTTCAACTCCAGCTCATCCGGCACTTCg > 1:309632/1‑251 (MQ=255) gACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCATACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCg > 1:86762/1‑251 (MQ=255) agctcgTCTTATCATGCCTACAAACTTGGGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCGGGCGCGTCTTAGCATGCCTACAAACTTGTGCCGGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACGTACAGCATCGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTtat < 1:244923/245‑1 (MQ=38) gcgTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGAc < 2:174970/251‑1 (MQ=255) aTCATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACAt > 1:116494/1‑251 (MQ=255) tCATGCCTACAAACTTGTGCCGGATCGGTAAGCAGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATg > 1:4557/1‑251 (MQ=255) cATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATGc < 1:211811/251‑1 (MQ=255) cATGCCTACAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGGGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATg < 1:484149/250‑1 (MQ=255) aCAAACTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCg < 1:29774/251‑1 (MQ=255) ccTTGTGCCGGATCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGTAGTTATGCGCAGATGCCTGATGCGCCGCCGGCGCGTCTTATCATGCCTCCAAACTTGTGCCTTCACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCACTGCTGGATACTTACATCCCCCCCCCCATAATCTTCAACTCCAGCTCATCCGCCACTTCGTTATACGCCAGCACATACAGCCCCGgccc > 2:246603/2‑249 (MQ=37) tgtgCCGGATCGGTACGACGGATAAGGCGTTTCTGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACCAACTTGTGCCTGCACGGTAGGACGGCTAAGGCGTTCCAGCCGCATCAGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGAACGCACATGCAGCCCCGgcgcca > 1:409582/1‑248 (MQ=38) aTCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGCTGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGc > 2:82462/1‑155 (MQ=255) aTCGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGc < 1:82462/155‑1 (MQ=255) gcGGTAAGCCGGATAAGGCTTTTATGCCGCATCCGGCAGTTAGGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCGGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCTCAAACAACCTTGc < 1:170031/250‑1 (MQ=255) gcGGTAAGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGc < 2:273894/250‑1 (MQ=255) ggTAAGCCGGATAAGGCGATTATGCCGCCTCCGGCAGTTATGCGAAGATGCCTGGTGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCCGTTGTGAACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCCCTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTTCAt > 2:188900/1‑251 (MQ=255) | CATGTTGATTATATTTATATAAATCCAGTAAAGCATGGTTGGGTAAAGCAAGTGAGTGATTGGCCATTCTCAACGTTCCATCGCGATGTCGCGCGAGGGTTATATCCCATCGATTGGGCGGGGGACGTAACGGATTTTAGTGCCGGGGAGCGTATCATTTCATAATTGTGCGCAGATGCCTGATGCGACGCTAGCGCGTCTTATCATGCCTACAAACTTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTTATGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAACTTGTGCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAACCTTGCAT > NC_000913/247970‑248449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |