New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4366825 =	32 (0.670)	17 (0.360)	13/480	1.6	46.8%	intergenic (‑52/+14)	dcuA/aspX	C4‑dicarboxylate transporter DcuA/small regulatory RNA AspX
	?	NC_000913	4378238 =	7 (0.150)					coding (707/1134 nt)	ampC	beta‑lactamase

GGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGGCCCTGATACATATCGCCGGTTTGCCAGTAGCGAGATTGTGCCAGTTGTATCCCTTGTTGAAGCGTTTTCTCATTGATATCAAGGGGTTTTAAATTGCTTTGCACCCAGCGGGCCATATCTTCAATGGTCGACTTCACACCATAAGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCAGACGGCTTCACAGCCAGTGCGCCGAACAAACCGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGC  >  NC_000913/4377989‑4378483                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      ggCGTAATCGCGTTTACGGGACGTGCTGCCAGAGCAATTTTATTATCAGTGCCGTTAATGATGCTGTCACGATTTACCGGCCAGTCCAGCATTTCCCAGCACAGGCCCTGATACATCGCGCCGGTTTGCCAGTAGCGAGATTGGGCCAGGTGTATCCCTTGTTGAAGCGTTTTCTCATTGATATCAAGGGGTTTTACATTGCTTTGCACCCCGCGGGCCATATCTTCAATGGTTGACTTCACCCCCTAAGc                                                                                                                                                                                                                                                      >  2:497722/1‑251 (MQ=255)     tAATCGCTTTTACGAGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGGCCCTGATACATATCGCCGGTTTGCCAGTAGCGAGATTGTGCCAGTTGTATCCCTTGTTGAAGCGTTTTCTCATTGATATCAAGGGGTTTTAAATTGCTTTGCACCCAGCGGGCCATATCTTCAATGGTCGACTTCACCCCATAAGCttgg                                                                                                                                                                                                                                                  >  2:341627/1‑249 (MQ=255)       atgggttttACGGGGCGTGCTGCCAGTTCAATTTTATTGTCACTGCCGTTAAGGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGGCCTTGATACATTTCGCCGGTTTGCCAGTAGCGAGATTGTGCCAGTTGTATCCCTTGTTGAAGCGTTTGCTCATTGATATCAAGGGGTTTTAAATTGCTTTGCACCCAGCGGGCCATATCTTCAATGGTCGACTGCACACCATAAGCttggta                                                                                                                                                                                                                                                <  2:95195/246‑5 (MQ=255)       aTCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGGCCCTGATACATATCGCCGGTTTGCCAGTAGCGAGATTGTGCCAGTGGTATCCCTTGTTGAAGCGTTTTCTCATTGATATCAAGGGGTTTTAAATTGCTTTGCACCCAGCGGGCCATATCTTCAATGGTCGACTTCACACCATAAGCttggta                                                                                                                                                                                                                                                <  1:424544/251‑5 (MQ=255)             tttACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGGCCCTGATACATATCTCCGGTTTGCCAGTAGCGAGATTGTGCCAGTTGTATCCCTTGTTGAAGCGTTTTCTCAGTGATATCAAGGGGTTTTAAATTGCTTTGCACCCAGCGGGCCATATCTTCAATGGTCGACTTCACACCATAAGCttggtaatgc                                                                                                                                                                                                                                            <  1:301710/249‑9 (MQ=255)                      cGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGGCCCTGATACATATCGCCGGTTTGCCAGTAGCGAGATTGTGCCAGTTGTATCCCTTGTTGAAGCGTTTTCTCATTGATATCAAGGGGTTTTAAATTGCTTTGCACCCAGCGGGCCATATCTTCAATGGTCGACTTCACACCATAAGCttggtaatgcagaattgatct                                                                                                                                                                                                                                 >  1:103854/1‑232 (MQ=255)                                                                                                                                                          caccgatcctctagagtcgacctgcagtaatcgtacagggtagtacaaataacaaaggcacgtcagatgacgtgccttttttcttgtgagcagtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACt                                                                                             >  1:482741‑M2/97‑251 (MQ=255)                                                                                                                                                                 cctctagagtcgacctgcagtaatcgtacagggtagtacaaataaaaaaggcacgtcagatgacgtgccttttttcttgtgagcagtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTgcg                                                                                                                                                                       >  1:288389‑M2/90‑170 (MQ=255)                                                                                                                                                                 cctctagagtcgacctgcagtaatcgtacagggtagtacaaataaaaaaggcacgtcagatgacgtgccttttttcttgtgagcagtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTgcg                                                                                                                                                                       <  2:288389‑M2/81‑1 (MQ=255)                                                                                                                                                                                 gcagtaatcgtacagggtagtacaaataaaaaaggcacgtcagatgacgtgccttttttcatgtgagcagtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCAGACGGCTTCACAGc                                                                        <  2:363659‑M2/176‑1 (MQ=255)                                                                                                                                                                                 gcagtaatcgtacagggtagtacaaataaaaaaggcacgtcagatgacgtgccgtttttcttgtgagcagtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAAGTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCAGACGGCTTCACAGCCa                                                                      <  2:197905‑M2/178‑1 (MQ=255)                                                                                                                                                                                      aatcgtacagggtagtacaaataaaaaaggcacgtcagatgacgtgccttttttcttgtgagcagtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACGCAAACCAGACGGCTTCACAGCCAGTgcg                                                                 <  2:84244‑M2/183‑1 (MQ=255)                                                                                                                                                                                                ggtagtacaaataaaaaaggcacgtcagatgacgtgccttttttcttgtgagcagtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCAGACGGCTTCACAGCCAGTGCGCCGAACAAAc                                                       <  2:155771‑M2/193‑1 (MQ=255)                                                                                                                                                                                                  ttAAATTGCTTTGCACCCAGCGGGCCATATCTTCAATGGTCGACTTCACACCATAAGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCAGACGGCTTCACAGCCAGTGCGCCGAACAAAcc                                                      <  1:135974/250‑1 (MQ=255)                                                                                                                                                                                                         aataaaaaaggcacgtcagatgacgtgccttttttcttgtgagcagtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTACTTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGCGTTTGCATCGCCTGCTCAAAACTCAAACCAGACGGCTTCACAGCCAGTGCGCCGAACAAACCGCTACTgg                                              >  1:45212‑M2/50‑251 (MQ=255)                                                                                                                                                                                                               aaaggcacgtcagatgacgtgccttttttcttgtgagcagtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAAttcttttctt                                                                                                                                                                            <  2:18808‑M2/76‑1 (MQ=255)                                                                                                                                                                                                               aaaggcacgtcagatgacgtgccttttttcttgtgagcagtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAAttcttttctt                                                                                                                                                                            >  1:18808‑M2/44‑119 (MQ=255)                                                                                                                                                                                                                 aggcacgtcagatgacgtgcctttttgcttgtgagcagtaaGCCTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCGGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCAGACGGCTTCACAGCCAGTGCGCCGAACAAACCGATACTGGAGTTGGCa                                      <  2:45212‑M2/210‑1 (MQ=255)                                                                                                                                                                                                                    cacgtcagatgacgtgccttttttcttgtgagcagtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCAGACGGCTTCACAGCCAGTGCGCCGAACAAACCGATACTGGAGTTGGCATAc                                   >  1:419393‑M2/39‑251 (MQ=255)                                                                                                                                                                                                                      cgtcagatgacgtgccttttttcttgtgagcagtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCCGACGGCTTCACAGCCAGTGAGCCGAACAAACCGATACTGGATTTGGCATAc                                   >  2:496132‑M2/37‑249 (MQ=255)                                                                                                                                                                                                                                 gtgccttttttcttgtgagcagtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCAGACGGCTTCACAGCCAGTGCGCCGAACAAACCGATACTGGAGTTGGCATACAGACGTTGTGTTc                      <  1:293938‑M2/226‑1 (MQ=255)                                                                                                                                                                                                                                              tgtgagcagtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCATACGGCTTCACAGCCAGTGCGCCGAACAAACCGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCAt           <  1:82505‑M2/237‑1 (MQ=255)                                                                                                                                                                                                                                                     agtaaGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTCATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCAGACGGCTTCACAGCCAGTGCGCCGAACAAACCGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGc  >  1:71376‑M2/6‑251 (MQ=255)                                                                                                                                                                                                                                                     agtaaGCGTCAGCATCTAACGCTCCAGGCGAAACAGGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCGGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCAGACTTCTTCACAGCTATTGCGCCGAACAAACCGATACTGGAGTCGGCATACAGAGGGTGTGTTCCTTGTGCCTGTGCAGgcttc  <  2:257356‑M2/246‑3 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      GGCGTAATCGCTTTTACGGGGCGTGCTGCCAGTGCAATTTTATTGTCACTGCCGTTAATGATGCTGTCAGGATTTACCGGCCAGTCCAGCATTTCCCAGCCCAGGCCCTGATACATATCGCCGGTTTGCCAGTAGCGAGATTGTGCCAGTTGTATCCCTTGTTGAAGCGTTTTCTCATTGATATCAAGGGGTTTTAAATTGCTTTGCACCCAGCGGGCCATATCTTCAATGGTCGACTTCACACCATAAGCTTCAGCATCTAACGCCCCAGGCGAAACATGCACTGCCTTACCTTCGCGATATCCCCAGGCGTAATTCTTTTCTTCTGCGGGCGGTACATTAATCCACGTATGGTTGAGTTTGAGTGGCTGGAAGACACGAGTTTGCATCGCCTGCTCAAAACTCAAACCAGACGGCTTCACAGCCAGTGCGCCGAACAAACCGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGC  >  NC_000913/4377989‑4378483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.