Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	2,916,218	IS5 (–) +4 bp	coding (1162‑1165/2757 nt)	barA →	sensor histidine kinase BarA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288919 =	NA (NA)	53 (1.110)	49/486	0.1	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	= 2916221	0 (0.000)					coding (1165/2757 nt)	barA	sensor histidine kinase BarA
*	?	NC_000913	= 2290113	NA (NA)	61 (1.280)	57/486	0.1	100%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	2916218 =	0 (0.000)					coding (1162/2757 nt)	barA	sensor histidine kinase BarA

AACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAACCC  >  NC_000913/2288673‑2289163                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                     aaCAATTTGATAACCGTCATTTAATTCTGAGTATTCTTCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGTTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCATCTGTCTCACCAGACGCAACATTTGATCCCAATTCTATGGTTGTATATacggaag                                                                                                                                                                                                                                                  <  2:450697/251‑1 (MQ=255) aaCAATTTGATAACCGTCATTTAATTCTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATCCCCTCCGTTAATTTCAGTATTATGACTTACTCCAAATTCTTTTATATGCTGTTCGCCGCCAGGATTTATTTTCGTATTATTGGCGGTCCCAGAAACCATCGGTATATCTTTTTCCAGGACAACAGCTTCAGCTGGCTCACCATACTCAACAGGTGGTGCGAATGCTGGGGGTGATTATaatgaag                                                                                                                                                                                                                                                  <  2:469086/251‑1 (MQ=255)         gATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATTCCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAAt                                                                                                                                                                                                                                          <  2:5765/251‑1 (MQ=255)            aaCCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAATGTGCGAATaa                                                                                                                                                                                                                                        <  1:87608/250‑1 (MQ=255)               cGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTTCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCgg                                                                                                                                                                                                                                    >  1:113652/1‑251 (MQ=255)                    tttAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGAACCCATCAACCAGCTGGATATTTTTTTCCAGGACAACACAATCAAATCTTTCACCATACTCCACAGTTGATATCAATGCAATTGGTGAATATAAGGGAGGTGTGTATAAGCGGGGaa                                                                                                                                                                                                                                >  1:466845/1‑250 (MQ=255)                      tAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACCACACCATCAACTGGCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGCATAAACGGGGGAAtt                                                                                                                                                                                                                             >  2:415987/1‑251 (MQ=255)                       aaTACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAtt                                                                                                                                                                                                                             <  1:328357/250‑1 (MQ=255)                             gaggtgtcgtcggcgCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCGTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTAGCGGTCCCATAAACCAGCTGGATAGCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTCTGGTTGAATAGAAGGAAGGTTCGAATAAGCGGGGAAATTCTTCTCg                                                                                                                                                                                                                      <  2:199760/241‑1 (MQ=255)                                 aTTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                                                                                                                                                                                   <  1:33617/250‑1 (MQ=255)                                           gcCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcat                                                                                                                                                                                                        >  1:157568/1‑251 (MQ=255)                                             catgcattCCAATGTACTGATGCCCTCCGTTAATTTCAGTATTATTCCTTACACCAAATTCGTCGATATTCGGGTCGCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATATACCAGTTTGATATCTGTGTCCAGGACAACACTATCCAGTGTCTGCGCGGACGCAACTGTTGATGCCAATGCGATGGTGGATTATAAGGAAGGTGCGAATAAGCCGGTGAATGCTTCGCGGCTGACGCAGtcatt                                                                                                                                                                                                       <  2:221736/246‑1 (MQ=255)                                                       aaTGTACTGATACTCTCCGTTAATTTCAGTACTATTATTTACACCAAATTCATTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTTGAGGTCCCATAAACCAGCTGGAAATCTTTTTCCAGGCCAACACCATCACCTGTGTCATCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATTGGCGGGGATATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa                                                                                                                                                                                            <  1:253073/251‑1 (MQ=255)                                                                  aCCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCTGGATATCTTTTTCCAGGGCAACACCCTCAACTGTCTCACCAAACTCCACCGTTTATGCCAATGCTATGGGGGAATATAAGGAAGGGGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTTAGCCg                                                                                                                                                                                 >  1:502945/1‑251 (MQ=38)                                                                                tCAGTATTATTACTTACTCCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAATCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGTAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGATCCGATTGTTTCTCCCg                                                                                                                                                                    <  2:488348/250‑1 (MQ=255)                                                                                          tacttacACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCTTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGTTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATGTCATTTCTTCATGTTGGAGCCGATTTTTTCTCCCGTAAATGCCtt                                                                                                                                                          <  1:168903/250‑1 (MQ=255)                                                                                           acttacACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAAt                                                                                                                                                                                                                                          <  2:123038/169‑1 (MQ=255)                                                                                           acttacACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAAt                                                                                                                                                                                                                                          >  1:123038/1‑169 (MQ=255)                                                                                              tacACCAAATTCTTTTATATGCTGGTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATGTTTTCTCCCGTAAATGCCTTGaa                                                                                                                                                       <  2:502945/249‑1 (MQ=255)                                                                                               acacCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCCGGGTATCTTTTTCCAGGACAAAACCATCAACTGTCTCACCATACTCCACAGTTGATGCCAATCCTATAGGTGAACATAAGGAAGGTGCGCATAAGCGGGGAAATTTTTCTCGGCTGACTCAGTCATTTCCTTTCTTCCTGTTTTAGCCGCTTTTTTCTCCCGTAAATGCCTTGAATc                                                                                                                                                     >  1:59235/1‑250 (MQ=255)                                                                                                cacCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTTCAGGACAACACCATCAACTGTCTCACCATAATCAACAGTTGATGCCAATGCTATGGGGGGATTTAAGGAAGGGGCGAATAAGCGGGGAAATTCTTCTCGGCCGACTACGGCATTTCATTTCTTCTTGTTTGGGGCGGTTTTTTCTCCCGTTAATGACTTGAAtt                                                                                                                                                     >  1:36083/1‑248 (MQ=255)                                                                                                    aaaTTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCCCCATACTTACCAGTTGATGCCACTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGAGGGGAAATTCTTTTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGCTTTTTTCTCCCGTAAATGCCTTGAATCAGCCt                                                                                                                                                >  2:164324/1‑250 (MQ=37)                                                                                                                    tGTTCTCCGCCAGGATTGATTTTAGTATTATTGGCGGTCCCATACACCAGCTGGGTATCTTTTTCCCGGATAACACCATCAACTGTCTCACCATACTCAACAGTTTATGCCAAAGCTAAGGGTGAATATAAGGAAGGAGCGAATAAACGGGGCAATTTTTCTCGGATGACTCCGGCATTTCATTTCTTAATGTTTGAGCCGCATTTTTATCCCGTTAATTCCTTTAAtaatcccaatttaccagtttcttc                                                                                                                               >  2:383085/1‑228 (MQ=255)                                                                                                                       tctcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCCCCTGGATATTTTTTTTCAGGACCACACCATCAACTGTCCCACCATAATCAACAGTTGATGCCTACGCTATGGGGGACTAAAAGGAAGGGTCGAATAAGCGGGGACATTCTTCTCCGCTGACTCAGTCATTTCATTTTTTTCTGTTTGAGCCGATTTTTTCACCCGTAAATGCCTTTATTCAGCCTATTTatccccgttcttcgcc                                                                                                                            >  2:276457/1‑236 (MQ=255)                                                                                                                            gCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCACCTGGATATCTTTTTTCAGGACAACACCATCAACTGTCTCACCCTACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGGGCGGATAAGCGGGGGAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCCTGTTTGAGCCGATTTTTTTTCCCGTAAAAGCCTTGAAACAGCCCATTTTGAACGTtttttccccctttt                                                                                                                       >  2:170518/1‑243 (MQ=25)                                                                                                                              catgattgattCTCGGATTAATGGCGTTTCCATAAACCAGCTGGATATCGTGTTCCAGGACAACACCATCAACTTTCTTAACATACTTAACAGTTGATTCCAATGCTATGGGTGAATATAAGGAAGGGGCTAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTGCTTCATGTTTGAGCCGATTTTTTCTCCCTTAAAAGCCTTGAATCATCCTATTTAGACCTTTTCTTCGCCTTTTAAg                                                                                                                     <  1:301937/248‑1 (MQ=18)                                                                                                                                        tttCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAGTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcc                                                                                                            <  2:189086/250‑1 (MQ=255)                                                                                                                                            gTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACCGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGt                                                                                                       >  1:375725/1‑251 (MQ=255)                                                                                                                                                          cccATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGAtct                                                                                         >  1:493829/1‑251 (MQ=255)                                                                                                                                                               aaaCCAGCTGGATATCTTTTTCCAGTACAACACCATCAACTGTCTCACGATACGCAACAGATGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATGTCATTTCGGCATGGTTGAGCCGATTTTGTCTCCCGTAAATGCCTTGAATCAGCCGTTTTAGACCGTTTCTTCGCCATATAAGACGGTATCCCCAGTGTTGAGTGAGATCTCTccc                                                                                    <  2:82091/251‑1 (MQ=18)                                                                                                                                                                aaCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGAtctct                                                                                       >  2:97631/1‑247 (MQ=255)                                                                                                                                                                aaCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGAtctct                                                                                       <  1:97631/247‑1 (MQ=255)                                                                                                                                                                    aGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACGCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCTATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGa                                                                               <  1:70912/251‑1 (MQ=255)                                                                                                                                                                       tGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGt                                                                            >  1:146732/1‑251 (MQ=255)                                                                                                                                                                            atCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGCTGATGCCAATGCTATGGGTGAATCTAAGGAAGGTGCGAATACGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCAt                                                                       >  1:244884/1‑251 (MQ=255)                                                                                                                                                                                           aacaCCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGaa                                                         >  1:347099/1‑250 (MQ=255)                                                                                                                                                                                           aacaCCATCAACTGTCTCACCATACTCAACAGATGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGaa                                                         >  1:340104/1‑250 (MQ=255)                                                                                                                                                                                                   cAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAATGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTgg                                                <  1:418537/251‑1 (MQ=255)                                                                                                                                                                                                    aaCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCACCAGATTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGc                                               >  1:250571/1‑251 (MQ=255)                                                                                                                                                                                                                                       cTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGtttt            >  1:56384/1‑251 (MQ=35)                                                                                                                                                                                                                                           gggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAATGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGGATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATc                 <  2:309738/242‑1 (MQ=18)                                                                                                                                                                                                                                           gggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGACGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATc                 >  1:309738/1‑242 (MQ=18)                                                                                                                                                                                                                                                 atatAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAAccc  <  1:136415/251‑1 (MQ=31)                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                     AACAATTTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAACCC  >  NC_000913/2288673‑2289163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.