Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	4,542,372	IS1 (–) +9 bp	coding (336‑344/597 nt)	fimE →	regulator for fimA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1979270	NA (NA)	42 (0.890)	39/484	0.3	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	4542372 =	0 (0.000)					coding (336/597 nt)	fimE	regulator for fimA
*	?	NC_000913	= 3584195	NA (NA)	53 (1.120)	49/482	0.1	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 4542380	0 (0.000)					coding (344/597 nt)	fimE	regulator for fimA

ACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3583949‑3584195 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACCTTCATTAAGGTCAAGGTCCTGATAATGCAGATCAAGCAGTTCACTAATACGCATCCCATGCCGATATGCCAAC  <  NC_000913/4542380‑4542135                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               cCCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCT                                                                                                                                                                                                                                                    <  1:407178/250‑1    cgTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAAGCCCGCCTGAAGGGAAAGCTTCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAAGCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGTCAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGC                                                                                                                                                                                                                                                 <  1:32741/249‑1             GGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCC                                                                                                                                                                                                                                        <  1:226522/251‑1                       ATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCG                                                                                                                                                                                                                              >  2:281831/1‑251                            GGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATGAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAG                                                                                                                                                                                                                         <  1:354793/251‑1                                         CTGTATGAATCAGGACTGCAGGGAAAGCTGCACGCAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGACGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGATGGAGTCATTACCTGCTGGCGAGAAAGACGAATCCAGCGGCGAGAAATAAATATAGC                                                                                                                                                                                                            >  2:433906/1‑251                                           GTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACGATCAATAAGTTGGAGACATTACCTGCTGGCGGGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGC                                                                                                                                                                                                            <  2:76957/249‑1                                               GAATCCCGGCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGGCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAG                                                                                                                                                                                                       <  2:131404/250‑1                                                    CCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGT                                                                                                                                                                                                 <  1:137278/251‑1                                                             GGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTT                                                                                                                                                                                        >  1:144344/1‑251                                                                 AAGCTGTACGTAATCAGCAAGCGATATGCGCAGCGAATTGAGCGGCAGAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATAGGTGGACCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTTCCTGCTGGCGTGAAAGCCGACTCCCGCGGCGAGACATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCA                                                                                                                                                                                    <  1:80492/251‑1                                                                      GCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTT                                                                                                                                                                                 >  2:258862/1‑249                                                                        gCGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGAAGCACCTGGCCCGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTACGGTCAGCGCCTGTCCAGTTAGC                                                                                                                                                                              >  2:134931/2‑250                                                                           gAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTTGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGTAGTCATGCCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGTGTCAGTCCGGTCAGCGCTTTTCCAGTTAGCACGT                                                                                                                                                                          <  2:99035/250‑1                                                                                    AGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCGGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCATTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTC                                                                                                                                                                 <  2:332359/251‑1                                                                                           TACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTT                                                                                                                                                          >  2:273367/1‑251                                                                                             CGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGGCTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCC                                                                                                                                                        <  1:51424/251‑1                                                                                                   GAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCT                                                                                                                                                  <  1:236832/251‑1                                                                                                           CGGCCTAACCTGAATCTGAGGAAGCAACTGGCACGGCTGGGCCGGACGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGCCAAAGGCCTCGGGCATTATCTGAACATAAAACACTATCAATCAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACT                                                                                                                                                                                                                                    >  2:86009/1‑161                                                                                                           CGGCATAACCTGAATCTGAGGCAGCACCTGTCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTAGCTGCTGGCGAGAAAGCCGACT                                                                                                                                                                                                                                    <  1:86009/161‑1                                                                                                            GGCATATCCTGAATCTGAGGCAGCACCTGTCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTGGGATTCATTACCTGCTGGCGAGAAAGCCGACGCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCA                                                                                                                                         <  2:146147/251‑1                                                                                                                  ACCTGAATCGGAGGCAGCATCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAACCGGTGGAGCTGCATGACAAAGTCATCGGGCAGTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATAGAGCGTCAGTCCGGTCAGCGCCTTGCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCAGGCTCAGCAAAA                                                                                                                                   <  2:193250/251‑1                                                                                                                    CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAAa                                                                                                                                  >  2:163221/1‑249                                                                                                                    CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACG                                                                                                                                 >  1:456043/1‑251                                                                                                                    CTGAATCGGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTTCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAA                                                                                                                                   <  1:163221/249‑1                                                                                                                       AATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAACCGTA                                                                                                                               >  2:398723/1‑250                                                                                                                             AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTG                                                                                                                        >  1:19092/1‑251                                                                                                                               GCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAA                                                                                                                      <  1:47878/251‑1                                                                                                                                CAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAAC                                                                                                                     >  1:7737/1‑251                                                                                                                                        GGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACTGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAA                                                                                                              <  2:453153/250‑1                                                                                                                                          CACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGGCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAAT                                                                                                           >  1:106489/1‑251                                                                                                                                           ACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCA                                                                                                                                                                                               <  1:55640/166‑1                                                                                                                                           ACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCA                                                                                                                                                                                               >  2:55640/1‑166                                                                                                                                                  GGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTTCTT                                                                                                   <  2:8340/251‑1                                                                                                                                                   GACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCAC                                                                                                                                              >  2:269472/1‑207                                                                                                                                                   GACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCAC                                                                                                                                              <  1:269472/207‑1                                                                                                                                                      GGAAGTCGCTGGCGTTCTCAAAATCGGTGGAGCTGCATGACGAAGTCATCGGGCATTATCTGAACATAAAACACCATCAATAAGTTGGAGTCATTCCCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGGCCAGCGTTCCACGGCTTCCCGCTCATCAAAACGTAACGGGTGAACGGTAGAAACTCCGTTCTTCAtt                                                                                               <  2:2247/251‑3                                                                                                                                                       GAAGTGGCTGTCGTTCTCAAAATCGGTTGAGCTGGATAACAAATTCATCGGGCATTATCTGAACATAAAACACTATCAAGAATTTGGAGTCATTACCTTCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGCTCAGCGCCTTTCCAGTTATCACGTTCCTGGGTTCAGCGTTACACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTCCGTCAGTC                                                                                              <  2:294246/251‑1                                                                                                                                                               TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAAT                                                                                       >  1:437637/1‑250                                                                                                                                                                          AAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACC                                                                           <  1:281831/251‑1                                                                                                                                                                              cgggtGAGCTGCATGACAAAGTCATCGGGAATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACCTTCA                                                                       <  1:26033/246‑1                                                                                                                                                                                        GCATAACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACTGTAGAAAATCCGTTCGTCAGTCGGCGAATATTTATTCTACCTTCATTAAGGTCAA                                                             <  2:427413/251‑1                                                                                                                                                                                          ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGAGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTACTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGCAACGGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACCTTCATTAAGGTCAggg                                                           >  1:243650/1‑248                                                                                                                                                                                                         GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACCTTCATTAAGGTCAAGGTCCTGATAATGCAGA                                            <  2:160843/251‑1                                                                                                                                                                                                           CATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACCTTCATTAAGGTCAAGGTCCTGATAATGC                                               >  1:224842/1‑246                                                                                                                                                                                                                       ATAAAACACTATCAATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACCTTCATTAAGGTCAAGGTCCTGATAATGCAGATCAAGCAGTTAACT                              >  1:397003/1‑251                                                                                                                                                                                                                                    AATAAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACCTTCATTAAGGTCACGGTCCTGATAATGCAGATCAAGCAGTTCACTAATACGCATCCC                  >  2:47928/1‑250                                                                                                                                                                                                                                       AAGTTGGAGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCCGCGAGAAATAAATATAGCTTCAGTCCCGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGGCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACTGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACCTTCATTAAGGTCAAGTTCCTGATAATGCAGATCAAGCAGTTCACTAATACGCATCCCATG               <  1:258862/250‑1                                                                                                                                                                                                                                              AGTCATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACCTTCATTAAGGTCAAGGTCCTGATAATGCAGATCAAGCAGTTCACTAATACGCATCCCATGCCGATATG       <  2:154525/251‑1                                                                                                                                                                                                                                                 CATTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACCTTCATTAAGGTCAAGGTCCTGATAATGCAGATCAAGCAGTTCACTAATACGCATCCCATGCCGATATGCC     <  1:227166/250‑1                                                                                                                                                                                                                                                   TTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACCTTCATTAAGGTCAAGGTCCTGATAATGCAGATCAAGCAGTTCACTAATACGCATCCCATGC              <  1:425796/239‑1                                                                                                                                                                                                                                                   TTACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACCTTCATTAAGGTCAAGGTCCTGATAATGCAGATCAAGCAGTTCACTAATACGCATCCCATGC              >  2:425796/1‑239                                                                                                                                                                                                                                                     ACCTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGACATCAATATAGCGTCAGTCCGGTCAGAGCCTTTCCAGTTAGCCCGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCCTCAAAACGTAACGGGTGCACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACCTTCATTAAGGTCAAGGTCCTGATAATGCAGCTCAAGCAGTTCACTAATACGCATCCCATGCCGATATGCCAAC  >  2:443061/1‑249                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACCCTTTGACGTGGTGATATGGATGACGGATGGCTGGCCGCTGTATGAATCCCGCCTGAAGGGAAAGCTGCACGTAATCAGCAAGCGATATACGCAGCGAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3583949‑3584195 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccTGCTGGCGAGAAAGCCGACTCCCGCGGCGAGAAATAAATATAGCGTCAGTCCGGTCAGCGCCTTTCCAGTTAGCACGTTCCTGGGTCCAGCGTTCCACGGCTTCACGCTCATCAAAACGTAACGGGTGAACGGTAGAAAATCCGTTCTTCAGTCGGCGAATATTTATTCTACCTTCATTAAGGTCAAGGTCCTGATAATGCAGATCAAGCAGTTCACTAATACGCATCCCATGCCGATATGCCAAC  <  NC_000913/4542380‑4542135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.