New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19068770 (0.000)37 (0.830) 36/480 0.3 100% coding (184/810 nt) rlmA 23S rRNA m(1)G745 methyltransferase
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

TGGCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAGAATGCGCGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCTGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGCAA  >  NC_000913/1906642‑1907118
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                 
tggatGGAAGCGACACACAAAGTGGATTACGGATAGTGTTTAGCTGTCGCTATTATCGATAACTTCGAAAAATCTAGACCAAATGTGGTGATTTCGGGCAGCGCCTCGGCCAATGCGAGTGTGTAATACACTTCACAACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGACGTTCCCTCAGTTTGGCGACAATTGAATCACGCAGAGGCTGATAATGTCCGGCATCTAAgtaaggtgagaaccc                                                                                                                                                                                                                                    >  2:445474/5‑237 (MQ=255)
ggccggaaggCGACACAAAAAGGGGCTGGCGGAGAGCGTTCCGACGCCGCTTTTATCGCTACCTGCGAAACACACAGCCCAAACTGGGTGATTCCGGGCAAGGCATCGGCAAAGGCGTGGGTGTAATCCCCTTCCCCCCACCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCGAAggaaggtgcgaacaa                                                                                                                                                                                                                                    <  2:303931/242‑15 (MQ=255)
       aaGCGACACAAAAAGTGCCCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGCTACCTTCGAACCATCCAGACAAAACGTGGTGATTTCGGGCAACGCATCGGAAAATGCGTGTGTGTAATCCCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctg                                                                                                                                                                                                                             <  1:122043‑M1/251‑23 (MQ=255)
                      ggcccggcggataGCGTTTCGCCGCCGCTTTTATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtt                                                                                                                                                                                                              <  1:159957‑M1/245‑38 (MQ=255)
                                  ggctttccgcctccgcttttatcGCTACCTTCGAAACACCCAGTCAAAACTTGTTGATCTCGGGCAACGCGTCGTCAAATGCGTGTGTGTAATACCCTTCCCCCCATCCAATTTCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaactagtccctgatatgagatcatgtttttcatctggag                                                                                                                                                                                                  <  2:408363‑M1/244‑50 (MQ=255)
                                       ttCGCCGCCGCTTTGATCGCTAACTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGACGTGGCCTTATCATCAAGACGTTCACTCAGTTGGGCGACAATTGCATCAAGCAGCGGCTGATAATGTCCGGCATATAAggaaggtgcgaaaaagtcactgatatgagataatgtttgtcatctggagccat                                                                                                                                                                                              >  2:413444‑M1/1‑197 (MQ=255)
                                        tCGCCGCCGCTTTTATCGCTACCTTCGAAACATCCAGACCAACCGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCAAATATCCAGCGCCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                                                                                                                             <  1:58615‑M1/250‑55 (MQ=255)
                                            cgccgcTTTTATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac                                                                                                                                                                                         >  1:180813‑M1/1‑192 (MQ=255)
                                               cgcTTTTATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGGGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                                                                                                                     >  1:209952‑M1/1‑189 (MQ=255)
                                                     tATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                                                                                                                                                                               >  1:194984‑M1/1‑183 (MQ=255)
                                                            ccctccgaaacAGCCAGACCAAACGTGTTGATTGCGGTCAACGCATCGGCAAAGGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCCCCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagt                                                                                                                                                                         <  1:55513‑M1/245‑75 (MQ=255)
                                                             cctccgaacctaccagcccaaacgtgGTTATTTCGGGCAACGACTCGGCAATTACGTGTGTGTAATACCCTTCCCCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca                                                                                                                                                                       <  2:334090‑M1/239‑77 (MQ=255)
                                                                tCGAACCACCCAGACCAAACGGGGTGATTTCGGGCAACGCATCGCCAAATGCGTGTGTGTAATCCCCTTCCCCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                                                                                                                                     <  2:401938‑M1/250‑79 (MQ=255)
                                                                   aaaCATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAAGTCCCTTCACCACAGCCAATATCCATCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact                                                                                                                                                                 <  1:196038‑M1/251‑83 (MQ=255)
                                                                         ccAGACAAACCGTGGTGATTTCGGGCACCGCATGGGCAAATGCGGGTGGGTAATCCCCTCCCCCACAGCCAATATCCAGCCCCGCCGTGGCCTTAGCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct                                                                                                                                                            <  2:209952‑M1/250‑88 (MQ=255)
                                                                          cagccaaaacgtggtTATTCGGGGAACCGCACCGGCAAAGCCTGGTGTTTAATCCCCTTCACCACAGCCAATATCCAGCCCCGCCGTGGCCTTATCATCAAGCCGTTCCCCCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc                                                                                                                                                          <  2:57514‑M1/245‑90 (MQ=255)
                                                                               aaaacGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccg                                                                                                                                                      >  2:259951‑M1/2‑157 (MQ=255)
                                                                                         gATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATCCCCTTCCCCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattc                                                                                                                                           <  1:27272‑M1/251‑105 (MQ=255)
                                                                                                ggCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagt                                                                                                                                     >  1:380437‑M1/1‑140 (MQ=255)
                                                                                                   aaCGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc                                                                                                                                 >  1:257754‑M1/1‑137 (MQ=255)
                                                                                                      cGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgc                                                                                                                               >  1:165820‑M1/1‑135 (MQ=255)
                                                                                                       gCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgcc                                                                                                                              >  2:257469‑M1/1‑134 (MQ=255)
                                                                                                           cGGCAAATGCGTTGGTTTAATACCCCTCCCCCCAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtca                                                                                                                          <  2:210847‑M1/251‑122 (MQ=255)
                                                                                                             gCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga                                                                                                                        <  1:257469‑M1/251‑124 (MQ=255)
                                                                                                                 aTGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacc                                                                                                                      >  1:324451‑M1/1‑124 (MQ=255)
                                                                                                                   gCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccaga                                                                                                                   >  1:380787‑M1/1‑122 (MQ=255)
                                                                                                                          gtgtAATACCCTCCCCCCCAGCCAATACCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctgcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga                                                                                                            <  2:180813‑M1/251‑136 (MQ=255)
                                                                                                                                        accacAGCCAATATCACGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgc                                                                                              >  1:353321‑M1/1‑102 (MQ=255)
                                                                                                                                                                     ccTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacat                                                                 <  1:54583‑M1/251‑179 (MQ=255)
                                                                                                                                                                        tATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac                                                                                                                       >  1:388892‑M1/1‑70 (MQ=255)
                                                                                                                                                                        tATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac                                                                                                                       <  2:388892‑M1/194‑125 (MQ=255)
                                                                                                                                                                                aGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtca                                                      <  2:380787‑M1/251‑190 (MQ=255)
                                                                                                                                                                                   cGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcg                                                   >  1:18319‑M1/1‑59 (MQ=255)
                                                                                                                                                                                        ccTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccg                                              <  2:380437‑M1/251‑198 (MQ=255)
                                                                                                                                                                                               tGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttacc                                       >  2:40825‑M1/1‑47 (MQ=255)
                                                                                                                                                                                                          tGCATCACGCAGCGGCTGATAATGTCCGGAATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttttcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctgg                             <  2:14770‑M1/250‑215 (MQ=255)
                                                                                                                                                                                                           gCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggta                           <  1:157052‑M1/251‑217 (MQ=255)
                                                                                                                                                                                                                  gCAGCGGCTGAGAATGTCCGGCATCTAAggaagttgcgaacaaggccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcatattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccg                    <  2:267536‑M1/251‑224 (MQ=255)
                                                                                                                                                                                                                                     ggCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgcagtcagacaagaaaagagattttcttgtcccgcatggagcagatgctgccatggcaaaacatggtggaagtaatcgagccgttttaccccaaggctggtaatggccggcgacctgatccgctgga  >  1:174488‑M1/1‑9 (MQ=255)
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                 
TGGCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAACGCATCGGCAAATGCGTGTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAGAATGCGCGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCTGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGCAA  >  NC_000913/1906642‑1907118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.