New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1906877 | 0 (0.000) | 37 (0.830) | 36/480 | 0.3 | 100% | coding (184/810 nt) | rlmA | 23S rRNA m(1)G745 methyltransferase |
? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region |
TGGCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAA‑CGCATCGGCAAATGCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAGAATGCGCGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCTGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGCAA > NC_000913/1906642‑1907118 | tggatGGAAGCGACACACAAAGTGGATTACGGATAGTGTTTAGCTGTCGCTATTATCGATAACTTCGAAAAATCTAGACCAAATGTGGTGATTTCGGGCAG‑CGCCTCGGCCAATGCGA‑GTGTGTAATACACTTCACAACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGACGTTCCCTCAGTTTGGCGACAATTGAATCACGCAGAGGCTGATAATGTCCGGCATCTAAgtaaggtgagaaccc > 2:445474/5‑237 (MQ=255) ggccggaaggCGACACAAAAAGGGGCTGGCGGAGAGCGTTCCGACGCCGCTTTTATCGCTACCTGCGAAACACACAGCCCAAACTGGGTGATTCCGGGCAA‑GGCATCGGCAAAGGCGT‑GGGTGTAATCCCCTTCCCCCCACCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCGAAggaaggtgcgaacaa < 2:303931/242‑15 (MQ=255) aaGCGACACAAAAAGTGCCCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGCTACCTTCGAACCATCCAGACAAAACGTGGTGATTTCGGGCAA‑CGCATCGGAAAATGCGT‑GTGTGTAATCCCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctg < 1:122043‑M1/251‑23 (MQ=255) ggcccggcggataGCGTTTCGCCGCCGCTTTTATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAA‑CGCATCGGCAAATGCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtt < 1:159957‑M1/245‑38 (MQ=255) ggctttccgcctccgcttttatcGCTACCTTCGAAACACCCAGTCAAAACTTGTTGATCTCGGGCAA‑CGCGTCGTCAAATGCGT‑GTGTGTAATACCCTTCCCCCCATCCAATTTCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaactagtccctgatatgagatcatgtttttcatctggag < 2:408363‑M1/244‑50 (MQ=255) ttCGCCGCCGCTTTGATCGCTAACTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAA‑CGCATCGGCAAATGCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGACGTGGCCTTATCATCAAGACGTTCACTCAGTTGGGCGACAATTGCATCAAGCAGCGGCTGATAATGTCCGGCATATAAggaaggtgcgaaaaagtcactgatatgagataatgtttgtcatctggagccat > 2:413444‑M1/1‑197 (MQ=255) tCGCCGCCGCTTTTATCGCTACCTTCGAAACATCCAGACCAACCGTGGTGATTTCGGGCAA‑CGCATCGGCAAATGCGT‑GTGTGTAATACCCTTCACCACAGCAAATATCCAGCGCCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata < 1:58615‑M1/250‑55 (MQ=255) cgccgcTTTTATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAA‑CGCATCGGCAAATGCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac > 1:180813‑M1/1‑192 (MQ=255) cgcTTTTATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAA‑CGCATCGGCAAATGCGG‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg > 1:209952‑M1/1‑189 (MQ=255) tATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAA‑CGCATCGGCAAATGCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc > 1:194984‑M1/1‑183 (MQ=255) ccctccgaaacAGCCAGACCAAACGTGTTGATTGCGGTCAA‑CGCATCGGCAAAGGCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCCCCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagt < 1:55513‑M1/245‑75 (MQ=255) cctccgaacctaccagcccaaacgtgGTTATTTCGGGCAA‑CGACTCGGCAATTACGT‑GTGTGTAATACCCTTCCCCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca < 2:334090‑M1/239‑77 (MQ=255) tCGAACCACCCAGACCAAACGGGGTGATTTCGGGCAA‑CGCATCGCCAAATGCGT‑GTGTGTAATCCCCTTCCCCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc < 2:401938‑M1/250‑79 (MQ=255) aaaCATCCAGACCAAACGTGGTGATTTCGGGCAA‑CGCATCGGCAAATGCGT‑GTGTGTAAGTCCCTTCACCACAGCCAATATCCATCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact < 1:196038‑M1/251‑83 (MQ=255) ccAGACAAACCGTGGTGATTTCGGGCAC‑CGCATGGGCAAATGCGG‑GTGGGTAATCCCCTCCCCCACAGCCAATATCCAGCCCCGCCGTGGCCTTAGCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct < 2:209952‑M1/250‑88 (MQ=255) cagccaaaacgtggtTA‑TTCGGGGAACCGCACCGGCAAA‑GCCTGGTGTTTAATCCCCTTCACCACAGCCAATATCCAGCCCCGCCGTGGCCTTATCATCAAGCCGTTCCCCCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc < 2:57514‑M1/245‑90 (MQ=255) aaaacGTGGTGATTTCGGGCAA‑CGCATCGGCAAATGCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccg > 2:259951‑M1/2‑157 (MQ=255) gATTTCGGGCAA‑CGCATCGGCAAATGCGT‑GTGTGTAATCCCCTTCCCCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattc < 1:27272‑M1/251‑105 (MQ=255) ggCAA‑CGCATCGGCAAATGCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagt > 1:380437‑M1/1‑140 (MQ=255) aa‑CGCATCGGCAAATGCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc > 1:257754‑M1/1‑137 (MQ=255) cGCATCGGCAAATGCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgc > 1:165820‑M1/1‑135 (MQ=255) gCATCGGCAAATGCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgcc > 2:257469‑M1/1‑134 (MQ=255) cGGCAAATGCGT‑TGGTTTAATACCCCTCCCCCCAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtca < 2:210847‑M1/251‑122 (MQ=255) gCAAATGCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga < 1:257469‑M1/251‑124 (MQ=255) aTGCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacc > 1:324451‑M1/1‑124 (MQ=255) gCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccaga > 1:380787‑M1/1‑122 (MQ=255) gtgtAATACCCTCCCCCCCAGCCAATACCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctgcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagaga < 2:180813‑M1/251‑136 (MQ=255) accacAGCCAATATCACGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgc > 1:353321‑M1/1‑102 (MQ=255) ccTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacat < 1:54583‑M1/251‑179 (MQ=255) tATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac > 1:388892‑M1/1‑70 (MQ=255) tATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac < 2:388892‑M1/194‑125 (MQ=255) aGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtca < 2:380787‑M1/251‑190 (MQ=255) cGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcg > 1:18319‑M1/1‑59 (MQ=255) ccTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccg < 2:380437‑M1/251‑198 (MQ=255) tGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttacc > 2:40825‑M1/1‑47 (MQ=255) tGCATCACGCAGCGGCTGATAATGTCCGGAATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttttcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctgg < 2:14770‑M1/250‑215 (MQ=255) gCATCACGCAGCGGCTGATAATGTCCGGCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggta < 1:157052‑M1/251‑217 (MQ=255) gCAGCGGCTGAGAATGTCCGGCATCTAAggaagttgcgaacaaggccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcatattctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaaggctggtaatggccg < 2:267536‑M1/251‑224 (MQ=255) ggCATCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgcagtcagacaagaaaagagattttcttgtcccgcatggagcagatgctgccatggcaaaacatggtggaagtaatcgagccgttttaccccaaggctggtaatggccggcgacctgatccgctgga > 1:174488‑M1/1‑9 (MQ=255) | TGGCTGGAAGCGACACAAAAAGTGACCTGCGGATAGCGTTTCGCCGCCGCTTTTATCGCTACCTTCGAAACATCCAGACCAAACGTGGTGATTTCGGGCAA‑CGCATCGGCAAATGCGT‑GTGTGTAATACCCTTCACCACAGCCAATATCCAGCACCGCCGTGGCCTTATCATCAAGCCGTTCCCTCAGTTGGGCGACAATTGCATCACGCAGCGGCTGATAATGTCCGGCATCTAAGAATGCGCGGCGTGCTTGCATCATTTCCGCGCTGTCGCCCGGATCACGAGACCGTTTATGCTGAACGGGCAGCAGATTGACATACCCTTCTTTCGCCATATCAAACTGATGTCGCTGGGGACAGATATAGCTGTTTTTTTCACGCGAAAGAGGCTGATGGCAAAGTGGACAGGAAAAAGACATGACAACTCCGGCAGGATACTAAAGGCCGCAAGTGTAACGCGAATCACGCGGCGGGCAA > NC_000913/1906642‑1907118 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |