Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,876,099 C→T L143L (CTG→TTG)  nimT → 2‑nitroimidazole exporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,876,0990CT97.0% 97.9 / NA 34L143L (CTG→TTG) nimT2‑nitroimidazole exporter
Reads supporting (aligned to +/- strand):  ref base C (1/0);  major base T (14/18);  minor base G (0/1);  total (15/19)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGCCTTTGCGCTAATCTCACCTTTGGCTGCCCCGGTAGCGCGACGTTTTGGTATGGAACGTAGCCTGTTTGCCGCGTTACTTTTGATCTGTGCTGGTATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCATTAGGCAATGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCCTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCTTTTTTTATGGCTGCCACAGTGGCGAAGTCAACAACATGCAAATTTGAGTACCTCGCGCGCCTTACATACTCGGGGTATCTGGCGTTCACCGCTTGCCTGGCAGGTCACATTGTTTCTTGGGATC  >  NC_000913/1875852‑1876338
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                 
ggCCTTTGCGCTAATCTCACCTTTGGCTGCCCCGGTAGCGCGACGTTTTGGTATGGAACGTAGCCTGTTTGCCGCGTTACTTTTGATCTGTGCTGGTATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCATTAGGCAATGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCTTGa                                                                                                                                                                                                                                                <  1:435450/251‑1 (MQ=255)
                                    cgcgcGACGTTTTGGTATGGCACGTAGCCTGTTTGCCGCGTTACTTTTGATCTGTGCTGGTATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGGTTGCTTTTTGCAATGTCTTACTTCCAGGGTTAATTTAAAGCGGTTTTCCTCATTCCGTCGCCCGACTTACCCGCGCATATTCCTTGACAATGGGAGCTGCCGCAGCAACTGGGTCGGCTTTgg                                                                                                                                                                                                           >  2:353553/2‑251 (MQ=255)
                                                    aTGGAACGTAGCCTGTTTGCCGCGTTACTTTTGTTCTGTGCTGGTATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGGTTGCATTAGGCAATGGCTTAATGCCCGGGTTTATTAAACGCGATTTCCCTCATTCCGTCGCCAGACTTACCGGGGCATATTCCTTGACACTGGGAGCGGCCGCGGCACTGGGATCCGCTATGGTCGCGCCGCTGGcctt                                                                                                                                                                                           >  1:102120/1‑248 (MQ=255)
                                                                  gTTTGCCGCGTTACTTTTGATCTGTGCTGGTATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGGCATTGGCGGTGGGATTGCATTAGGCAATGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTtggc                                                                                                                                                                              <  2:556146/250‑1 (MQ=255)
                                                                       ccGCGTTACTTTTGATCTGTGCTGGTATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTAAACCGGCCATTGGCGGTCAGCATGCATTACGCAATGAATTAACGCCCGGGTTAATTAAAACCCCTTTCCCTCCATCCGTCGCCCACCTTACCGGAGCCCATTCCCTGACAATGGGGGCTGACGCGGCACTGGGCTCGGATATAGGCGTGCCGCTGGCTTTGAACGGGTTtgggtggcc                                                                                                                                                                        >  1:278043/1‑249 (MQ=255)
                                                                                  ttGATCTGTGCTGGTATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCATTAGGCAATGCCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCCTTCCGTCGCCCGACTTACCGGCGCCTATTCCTTGACAATGGGAGCTGCAGCGGCCCTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGGTTTGGCTGGCAAGGCGCGGTGCt                                                                                                                                                            >  1:88021/1‑251 (MQ=255)
                                                                                    gATCTGTGCTGGTATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCATTAGGCAATGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGGCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTc                                                                                                                                                           <  1:117079/250‑1 (MQ=255)
                                                                                     aTCTGTGCTGGTATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGCACAGCGGTCATTGGCGGTTGGTATGCCTTAAGCAATGTCTTACTGCCAGGAGTATTTAAACGCGATTTTCCTCATTTCGTATCCCAACTTACAGGCGCATATTCCTTTACAATTGGGGCTGCAGCGGCACTGGGATTGGCTATGGGCGAGCCGCTGGCGTTGGACGTTTTTAGCTGGGCAAGGGCGTTGCTcct                                                                                                                                                         >  2:33997/1‑249 (MQ=255)
                                                                                         gtgCTGGTATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCATTAGGCAATGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCt                                                                                                                                                      <  2:350316/250‑1 (MQ=255)
                                                                                             tGGTATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCCTTAGGCAATGTCTTACTGCCAGGATTAATTAAAAGCGATTTCCCTCATTCCGTCGCCCGACTTACCGGCGCATATTCCTTTACCATGGGTGCTTCAGCGGCCCTGGGCTCGGCTATGGTCGTGCCGCCGGCTTTTAACGGTTTTGTCTGGCAAGAAGCGTTGGTCCTGCttgtgt                                                                                                                                                 >  2:114354/1‑246 (MQ=255)
                                                                                              ggTATCGCAATTCGCTCTCTCCCGTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTTCATTAGGCAATGTCTTACGGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGAtgtg                                                                                                                                                <  1:568085/251‑1 (MQ=255)
                                                                                               gTATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCATTAGGCAATGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTg                                                                                                                                                                                                <  2:124316/203‑1 (MQ=255)
                                                                                               gTATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCATTAGGCAATGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGGCGTGCCGCTg                                                                                                                                                                                                >  1:124316/1‑203 (MQ=255)
                                                                                                tATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCATTAGGCAATTGCTTACTGCCCGGATTTATTAAAAGCGGTTTCCCCCATTCCGTCGCCCGACTTAACGGAGCATATTCCTTGACAATGGGAGCTGCCGCGGCACTGGGATCGGCTATGGTTGGTCCGCTGGCTTTGTACGGGTTTGGCTGGCCACGCGCGtgggtcactcggaggtgtt                                                                                                                                              >  2:370488/1‑233 (MQ=255)
                                                                                                 aTCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCATTAGGCAATGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGtt                                                                                                                                              <  1:162009/250‑1 (MQ=255)
                                                                                                      aaTTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCATTAGGCAATGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCGGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCctc                                                                                                                                        <  2:202638/251‑1 (MQ=255)
                                                                                                          cGCTCTCTCCCTCTGCCTTACTTAGTATTTGGCGGTACAGCGGACATTGGCGGTGGGATTGCATTTGGCAATGTCTTACTGCCAGGATTAATTAACCGCGATTTCCCTCATTCCGTCGCCAGACTTTCCGGCGCATATTCCTTGACAATGGGAGCTGCATCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTctgct                                                                                                                                    <  2:178451/251‑1 (MQ=255)
                                                                                                              ctctcCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGAGGGTTTGCATTAGGCAATGTCTTACTGCCAGGATTTATTAAACGCGATTTCCCTCTTTCCGTCGCCCGACTTTCCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCCATGGTCGTGCCGCTGGCTTTGAACGGTTTTTGCTGGCCAGGCGCGTTTCTCATGCTGATGTGATTTCCTCTGCTGGct                                                                                                                                >  1:395079/1‑251 (MQ=255)
                                                                                                                      tCGCCTTTCTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCATTAGGCAATGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCAGTCCGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCttttt                                                                                                                          <  2:392887/249‑1 (MQ=255)
                                                                                                                      tCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCATTAGGCAATGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCttttt                                                                                                                          <  2:101287/249‑1 (MQ=255)
                                                                                                                        gCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGTGGGGATTGTCTTAGGCAATGTCTTACTGCCATTATTGATTAAACGCGATTTCCCTCATTCCGGCGCCAGACTTATCGGTGCATATTCCTTGACAATGGGATCTGTAGCGGCACTGGGATTGGCTATGGTCGTGCCGCTTTCTTTTAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCTTTTTTTAt                                                                                                                      <  1:299877/251‑1 (MQ=255)
                                                                                                                                    attTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCATTAGGCAATGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCTTTTTTTATGGCTGCCACAg                                                                                                           <  2:122520/250‑1 (MQ=255)
                                                                                                                                      ttGGCGGTACAGCGGTCATTGGCGGTGGGGTTGGATTAAGCAAAGTCTTACTGCCCGGGTTAATTAAACGGGCTTTACCTAATTTCGTCGCCAGACTTAACGGCACATATTACTTTACAATGGGCGCTGGAGCGGCCATGGGATCGGCTATGGTCGTGCCGCTGGCTTGTAACGGTTTTTGCTGGCAAGGCGCGGTGCTCTTTCTGATGGGTTTTCATCTGCTGGCTCTTTTTTTATGGCTTCCACAGTgg                                                                                                        >  1:585502/1‑251 (MQ=255)
                                                                                                                                                                     tGCATTAGGCAATGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCTTTTTTTATGGCTGCCACAGTGGCGAAGTCAACAACATGCAAATTTGAGTAcc                                                                          <  1:120242/250‑1 (MQ=255)
                                                                                                                                                                               aaTGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGTCGCCAGACCTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCTTTTTTTATGGCTGCCACAGTGGCGAAGTCAACAACATGCAAATTTGAGTACCTCGCGCGCCtt                                                               >  1:167398/1‑251 (MQ=255)
                                                                                                                                                                                                              aTTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGCTCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCACGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCTTTTTTTATGGCTGCCACCGTGGCGAAGTCAACAACATGCAAATTTGAGTACCTCGCGCGCCTTACATACTCGGGGTATCTGGCGTTCACCGCtt                                >  1:360906/1‑251 (MQ=255)
                                                                                                                                                                                                              aTTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCTTTTTTTATGGCTGCCACAGTGGCGAAGTCAACAACATGCAAATTTGAGTACCTCGCGCGCCTTACATACTCGGGGTATCTGGCGTTCACCGCtt                                <  2:147828/251‑1 (MQ=255)
                                                                                                                                                                                                                  cccTCATTCCGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCTTTTTTTATGGCTGCCACAGTGGCGAAGTCAACAACATGCAAATTTGAGTACCTCGCGCGCCTTACATACTCGGGGTATCTGGCGTTCACCGCTTGcc                             <  2:88021/250‑1 (MQ=255)
                                                                                                                                                                                                                          ccGTCGCCAGACTTACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCTTTTTTTATGGCTGCCACAGTGGCGAAGTCAACAACATGCAAATTTGAGTACCTCGCGCGCCTTACATACTCGGGGTATCTGGCGTTCACCGCTTGCCTGGCAGGTc                    >  2:127298/1‑251 (MQ=255)
                                                                                                                                                                                                                             tCGCCAGACTTACCGGCGCATATTCCGTGACAATGGGAGCTGCAGCGGCACTGTGATCGGCTTTGGTCGTGTCGCTGGCTTTGATCGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCTTTTTTTAGGGCTGCCACAGTGGCGAAGTCAACAACATGCAAATTTGAGTGCCTCGCGCGCCTGACATACTCGGGGTATCGGGCGTTCTCCGCTTGCCTTGCAGGTca                   <  2:41409/249‑1 (MQ=255)
                                                                                                                                                                                                                              cGCCAGACTTACCGGCGCATATTACTTGACCTTGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGGTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCTTTTTTTATGGCTGCCACCGTGGCGAAGTCAACAACATGCAAATTTGAGTACCTCGCGCGCCTTACATACTCGGGGTATCTGGCGTTCACCGCTTGCCTGGCAGGGCACAt                >  2:368211/1‑251 (MQ=255)
                                                                                                                                                                                                                                 cAGACTTACCGGAGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCTTTTTTTATGGCTGCCACAGTGGCGAAGTCAACAACATGCAAATTTGAGTACCTCGCGCGCCTTACATACTCGGGGTATCTGGCGTTCACCGCTTGCCTGGCAGGTCACATTGt             >  2:508791/1‑251 (MQ=255)
                                                                                                                                                                                                                                       tACCGGCGCATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCTTTTTTTATGGCTGCCACAGTGGCGAAGTCAACAACATGCAAATTTGAGTACCTCGCGCGCCTTACATACTCGGGGTATCTGGCGTTCACCGCTTGCCTGGCAGGTCACATTGTTTCt         <  1:347567/249‑1 (MQ=255)
                                                                                                                                                                                                                                            gcgcATATTCCTTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTTCTGGCTCTTTTTTTATGGCTTCCACAGTGGCGAGGTCAACAACATGCAAATTTGAGTACCTCGCGCGCCTTACATACTCGTGGTATCTGGCGTTCACCGCTTGCCTGGCAGGTCACATTGTTTCTTGGGATc  <  1:356820/251‑1 (MQ=255)
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                 
GGCCTTTGCGCTAATCTCACCTTTGGCTGCCCCGGTAGCGCGACGTTTTGGTATGGAACGTAGCCTGTTTGCCGCGTTACTTTTGATCTGTGCTGGTATCGCAATTCGCTCTCTCCCTTCGCCTTACTTATTATTTGGCGGTACAGCGGTCATTGGCGGTGGGATTGCATTAGGCAATGTCTTACTGCCAGGATTAATTAAACGCGATTTCCCTCATTCCGTCGCCAGACTTACCGGCGCATATTCCCTGACAATGGGAGCTGCAGCGGCACTGGGATCGGCTATGGTCGTGCCGCTGGCTTTGAACGGTTTTGGCTGGCAAGGCGCGTTGCTCATGCTGATGTGTTTTCCTCTGCTGGCTCTTTTTTTATGGCTGCCACAGTGGCGAAGTCAACAACATGCAAATTTGAGTACCTCGCGCGCCTTACATACTCGGGGTATCTGGCGTTCACCGCTTGCCTGGCAGGTCACATTGTTTCTTGGGATC  >  NC_000913/1875852‑1876338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: