Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 3,803,945 | C→T | G65S (GGT→AGT) | waaB ← | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,803,945 | 0 | C | T | 94.9% | 128.5 / NA | 40 | G65S (GGT→AGT) | waaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
Reads supporting (aligned to +/- strand): ref base C (0/1); major base T (16/21); minor base G (0/2); total (16/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.03e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GATTGCTAAATGATAGTCGGCACAGGTGATATATTCAGCATGTTTTTTGTGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACCTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTA > NC_000913/3803724‑3804191 | gATTGCTAAATGATAGTCGGCACAGGTGATATATTCAGCATGTTTTTTGTGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATTTTTCGCCCGACGCAAAAAACCTAAACGAATATTGGAAAATTAACATGAg < 1:483098/250‑1 (MQ=255) aTTGCTAAATGATAGTCGGCACAGGTGATATATTCAGCATGTTTTTTGTGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGt > 1:238527/1‑250 (MQ=255) ttGCTAAATGATAGTCGGCACAGGTGATATATTCAGCATGTTTTTTGTGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGACCATGAGTAt > 1:515971/1‑251 (MQ=255) aaaTGATAGTCGGCACAGGTGATATATTCAGCATGTTTTTTGTGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAAt < 1:453554/251‑1 (MQ=255) aaTAGTCGACACAGGTGATATATACAGCATGGTTGTTGTGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATAACAATTCCTGATTTTTTACGTGCTTTTGCTGCAAACAGGCAGGAGATCACATCAATACAAAGAACGATATCTGGTTGGTACTCCTGAAACCATTTACTTAGAGCATGAATATGTATCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTAAATACCt < 2:8728/250‑1 (MQ=255) gCACAGGGGATATATTCAGCATGTTTTTTGTGATCTAAAGAAAAACGAGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTGTGCGGCAAACAGGCAGGTGATCACATCAATACAAATAACGATATCTGGTTGGGACTCCTGAAGCCATTACCTTAGAGAGTGAATATGTTTCGCCCGACGCAAAACACTTAAACGAATATTGGAAAATGAACAGGAGAATTTAATaacatccatcc > 2:205532/1‑240 (MQ=255) caGGTGATATATTCAGCATGTTTTTTGTGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATcc < 1:425166/251‑1 (MQ=255) atatTCAGCATGTTTTTTGTGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCa < 2:456119/251‑1 (MQ=255) atatTCAGCATGTTTTTTGTGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATAGTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCa < 1:501524/251‑1 (MQ=255) tttttGAGATCTAAAGAACAATGTGGCAATGAAAATACTGGCTTTTCATTTCCTGATTTTTTACGTGCTTTTGAGGCAAACAGGCAGGAGATCACATCATTACAAATAACGATATCTGGTTGGTACTCCTGAAGACATTTACTTAGAGCATGATTATGTTTTGCCCGACGCAAAAACCTTAAACTAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAACCATCCCTTATACATTTTTTCATTACg > 2:103456/1‑251 (MQ=255) aGAAAAATGTGGCCATGAAAATACTGGCATAGCAATTCCGGATTTTTTACGGGCGTTTGCGGCAAACAGGCAGTAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCATCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACa < 2:159480/251‑1 (MQ=255) aaaTGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTc > 2:454465/1‑251 (MQ=255) gtgGCCATGAAAATACTGGCATATCAATTCCTGATTTATTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACCTCAATACAAATAACGATATCTGGTTGGTACTCCGGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACCAATATTGGAAAATTAACATGAGTATTTAATACCTTCCAGACATCCCTTATCCATTTTGTCATTACGACAAAAGAAAATCATTTCACt < 2:17720/250‑1 (MQ=255) ggCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCGTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGATCAGGAATATGTTTCGCCCGACGCAAAAAACGTAAACGAATAATGGAAAATGAACATTAGTATTTAATACCTTCCAGCCATCCCTTTTCCATTTTGTCATTGCGACAAAATAAAAACAGTTctcgttg < 2:553033/251‑7 (MQ=255) cATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCATCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGat > 1:52307/1‑251 (MQ=255) aTACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATAtgttgt > 1:33275/1‑251 (MQ=255) tcTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTGTCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATgttgtt < 1:550671/249‑1 (MQ=255) aattgCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTTAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTAGCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATgttgtt < 2:433485/246‑1 (MQ=255) tGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGcc > 2:51700/1‑251 (MQ=255) ggCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGcc < 1:584946/250‑1 (MQ=255) atCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAg < 1:142864/250‑1 (MQ=255) ttttGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATcc < 2:157776/162‑1 (MQ=255) ttttGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATcc > 1:157776/1‑162 (MQ=255) ggCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTcc > 1:129922/1‑250 (MQ=255) gCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTACTGAAGCCATTTACTTAGACCATCAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGACAATGAACATGAGTATTTAATACCTTCCCGCCATCCCTTATCCATTTTGTCATTACGACAAACGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCAt > 1:29035/1‑251 (MQ=255) acaTCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAAc < 1:584666/251‑1 (MQ=255) aaaTAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGTATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCg < 2:388577/251‑1 (MQ=255) aaaTAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCg < 2:476923/251‑1 (MQ=255) atatCTGGTTGGTAATCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAAATTAACCGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGCTATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGTTTCGCCGATAAACGc > 2:310044/1‑251 (MQ=255) tCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAAc > 2:368356/1‑251 (MQ=255) cATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCAGTACGACAAAAGAAAAACATTTCACTTAGGATATTTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCATAAACAGCTTCGCCTATAACCGCTATTTTCATAGAAACTCTCATTaa < 2:28193/251‑1 (MQ=255) ttACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCTCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAAtt < 2:550210/250‑1 (MQ=255) ttACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTg > 1:228653/1‑251 (MQ=255) tAGAGCATGAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTa > 1:57785/1‑250 (MQ=255) gAATATGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACt < 1:323309/251‑1 (MQ=255) atGTTTCGCCCGACGCAAAAAACTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGttt < 1:51700/251‑1 (MQ=255) aaaaaaCTTAAACGAATAGAGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCGTATCCATTTTTTCATTACGACAAAAGAAAAACATTGCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGt < 1:550176/149‑1 (MQ=255) aaaCTTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCta < 2:344961/251‑1 (MQ=255) aaaCTTAAACGAATATTGCAAACTGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTAATTACGACAAAAGAAAAACATTTAACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCaatattcgtttaagttt > 1:219345/1‑151 (MQ=255) aaaCGTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCaatagtcgtttaagttt < 2:219345/167‑17 (MQ=255) | GATTGCTAAATGATAGTCGGCACAGGTGATATATTCAGCATGTTTTTTGTGATCTAAAGAAAAATGTGGCCATGAAAATACTGGCATATCAATTCCTGATTTTTTACGTGCTTTTGCGGCAAACAGGCAGGAGATCACATCAATACAAATAACGATATCTGGTTGGTACTCCTGAAGCCATTTACTTAGAGCATGAATATGTTTCGCCCGACGCAAAAAACCTAAACGAATATTGGAAAATGAACATGAGTATTTAATACCTTCCAGCCATCCCTTATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATCACGGATGACAGTTTCCATGCCGCCAAATCCAGAAACAGCTTCGCCGATAAACGCTATTTTCATAGAAACTCTCATTAATTGAGTAAAACTCACTGTTTTAACGGTTTTATTTGTCTA > NC_000913/3803724‑3804191 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |