Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,301,050 IS1 (+) +9 bp intergenic (+503/‑124) insH21 → / → oppA IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 258675NA (NA)30 (0.520) 28/490 0.9 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 = 1301058 0 (0.000)intergenic (+511/‑124) insH21/oppA IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein
* ? NC_000913 1301050 =0 (0.000)40 (0.690) 36/490 0.6 100% intergenic (+503/‑132) insH21/oppA IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1978503 = NA (NA)noncoding (768/768 nt) IS1 repeat region

TGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAATGGCAGGGAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAA  >  NC_000913/1300802‑1301298
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                        
caccctttgacgtggtgatatggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAg                                                                                                                                                                                                                                                        >  2:419836‑M1/249‑251 (MQ=255)
caccctttgacgtggtgatatggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAg                                                                                                                                                                                                                                                        >  1:212890‑M1/249‑251 (MQ=255)
 gttAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGt                                                                                                                                                                                                                                                       >  2:171925/1‑251 (MQ=255)
    aaGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGCATAAATAAAGTCgg                                                                                                                                                                                                                                                    >  1:249370/1‑251 (MQ=255)
      ggCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTAGTGGCGATTAAGAACCGCATGTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGGGATCGGCTGATTCACCAGAATAAATAAAGTCGGTg                                                                                                                                                                                                                                                  <  2:285158/251‑1 (MQ=255)
              gggatgtgggtgacggatgggtggccgcggtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactagcaataaggtggagtcattaccAAGTCGGTGATAGTAAt                                                                                                                                                                                                                                          >  2:510225‑M1/235‑251 (MQ=255)
                   atggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGt                                                                                                                                                                                                                                      >  1:88092‑M1/230‑250 (MQ=255)
                    cTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgcca                                                                                                                                                                                                                                     <  1:294639‑M2/250‑14 (MQ=255)
                            ggatggctgaccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATaa                                                                                                                                                                                                                              <  2:330618‑M1/29‑1 (MQ=255)
                                ggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggcgctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGAGATAGTAATACGTAACGAtaaagaaac                                                                                                                                                                                                                        <  1:332530‑M1/35‑5 (MQ=255)
                                 gctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAAcc                                                                                                                                                                                                                       >  1:258938‑M1/216‑251 (MQ=255)
                                  ctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCt                                                                                                                                                                                                                      <  1:61349‑M1/37‑1 (MQ=255)
                                        gctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGAcagc                                                                                                                                                                                                                <  2:100163‑M1/43‑1 (MQ=255)
                                        gcagtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagatggagtcattaccAAGTCGGAGATAGAAATACGTAACGATAAAGTAACCTGAc                                                                                                                                                                                                                   <  2:448203‑M1/40‑1 (MQ=255)
                                             aaGAGAATTGCTTAACAATTTTGAAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGATTCGACATAAGGTGATCGTCTGAATCACCAGAATAAATACAGACAGTGggtgctgctgacaacttactgatttagtgtatgatggtg                                                                                                                                                                                                           <  1:396025‑M2/251‑40 (MQ=255)
                                                     tGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttga                                                                                                                                                                                                    >  1:29721‑M2/1‑204 (MQ=255)
                                                       cTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt                                                                                                                                                                                                 <  1:556088‑M2/251‑50 (MQ=255)
                                                         tAAAAATTTTGCAAAATGGATTGGCGAGTAAGAACCGCATTTGGGACGTTCCGGGCAACCGCCAGACGACTCTTTATTGGGAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGGCATAAGGTGATCGGCTGAATCACCAGATTAAATAAAGTCGGGTggtgatgctgccaacttactgatttagtgtatgatggtggttttgatgtt                                                                                                                                                                                                >  2:377558‑M2/1‑200 (MQ=255)
                                                                      gcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctaaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGCCAGCAGAAAGTCTCCGAGCCTGTGCAGGGTccc                                                                                                                                                                                   <  1:95801‑M1/72‑1 (MQ=255)
                                                                          gtaatcagccagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATcc                                                                                                                                                                              <  1:193895‑M1/77‑1 (MQ=255)
                                                                                       gatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCATGGTCCCAATCCGGTATTACACATg                                                                                                                                                                 <  1:145998‑M1/90‑1 (MQ=255)
                                                                                       gatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATg                                                                                                                                                                 >  1:305626‑M1/162‑251 (MQ=255)
                                                                                        atatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGc                                                                                                                                                                <  1:43574‑M1/91‑1 (MQ=255)
                                                                                         aaCCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccct                                                                                                                                                               <  1:236545‑M2/251‑84 (MQ=255)
                                                                                               aTTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt                                                                                                                                                         >  1:40564‑M2/1‑162 (MQ=255)
                                                                                                 ttGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttc                                                                                                                                                        >  1:171925‑M2/1‑160 (MQ=255)
                                                                                                     attgagcggcataacctgaatctgaggcagcacctggcacggctgggacggcagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATAcc                                                                                                                                                     <  1:27161‑M1/102‑1 (MQ=255)
                                                                                                       tgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCagg                                                                                                                                                  >  2:43574‑M1/146‑249 (MQ=255)
                                                                                                       tgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGt                                                                                                                                                  <  2:340226‑M1/105‑1 (MQ=255)
                                                                                                       cTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctact                                                                                                                                                 <  2:586863‑M2/251‑98 (MQ=255)
                                                                                                        gagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAgg                                                                                                                                                                                        <  1:279690‑M1/67‑1 (MQ=255)
                                                                                                        gagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGGAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAgg                                                                                                                                                                                        >  2:279690‑M1/145‑211 (MQ=255)
                                                                                                              cataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGCTTACACATGCTGGTTAATACCAGTAATtata                                                                                                                                           <  1:530663‑M1/112‑1 (MQ=255)
                                                                                                                 aacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGa                                                                                                                                       >  1:100163‑M1/136‑251 (MQ=255)
                                                                                                                    cggaatctgaggcagcaccgggcccggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAggg                                                                                                                                    >  2:109443‑M1/133‑251 (MQ=255)
                                                                                                                      ccAGACGATTCTTTATTGGTCATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgt                                                                                                                                  <  1:477384‑M2/251‑113 (MQ=255)
                                                                                                                        aGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgcgccagtggcttctgtttctagcagctgtccctcctggtcagctactgacggggtggtgcgtaa                                                                                                                                >  2:249370‑M2/1‑137 (MQ=255)
                                                                                                                            gaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTcc                                                                                                                               >  2:151317‑M1/125‑248 (MQ=255)
                                                                                                                            gaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcgggggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggcgtcattaccAGGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGATGGAGGCCaa                                                                                                                             <  2:154890‑M1/126‑1 (MQ=255)
                                                                                                                                cagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAAc                                                                                                                        <  1:182309‑M1/131‑1 (MQ=255)
                                                                                                                                   tATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGAGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgctggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagc                                                                                                                      <  2:502212‑M2/250‑125 (MQ=255)
                                                                                                                                             gagaATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATACGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggac                                                                                                            <  1:304417‑M2/250‑135 (MQ=255)
                                                                                                                                                 gggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagtttgagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAAGGAGGGAGTCCAAAAAACAATGACCAACATCAc                                                                                                         >  1:580934‑M1/104‑249 (MQ=255)
                                                                                                                                                 gggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCAc                                                                                                         >  1:151978‑M1/104‑249 (MQ=255)
                                                                                                                                                   aatTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCGCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctggttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcg                                                                                                     >  1:53065‑M2/1‑110 (MQ=255)
                                                                                                                                                    atTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTATGACTCAACAGAATAAATAAAGTCGGAGggcgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgc                                                                                                    <  1:573020‑M2/251‑143 (MQ=255)
                                                                                                                                                            cgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggccttatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGttt                                                                                             <  1:363319‑M1/158‑1 (MQ=255)
                                                                                                                                                                   gttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTagcag                                                                                     >  2:182309‑M1/86‑251 (MQ=255)
                                                                                                                                                                       tcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagtgggagtcattaccAATTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAATTTTAGTAGCAGCTg                                                                                  >  2:363319‑M1/82‑250 (MQ=255)
                                                                                                                                                                               aataatGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGCTCGTCTGAATCACCAGAATAACTAAAGTCGGTGagtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagccccgccggaaatcagcgctatctctgctatcacttccgtaacacc                                                                         <  2:86538‑M2/251‑170 (MQ=255)
                                                                                                                                                                               aataatGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttcgtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaac                                                                          <  1:518828‑M2/250‑169 (MQ=255)
                                                                                                                                                                                 taatGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGGGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaaattactgatttagtgtatgatggtgtttttgaggtgatccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctctctctgctctcactgccgtaaaacatg                                                                       <  2:60288‑M2/251‑172 (MQ=255)
                                                                                                                                                                                       gtCTCGTCAGGAGAGACACGGTACGAATCTACATAAGGTGCTCGTCTGAATCGACAGAATAAATAAAGACGGTGggtgatgctgccaccttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatccgctgtccctcctgttcagctcctgacggggtggtgcgcaccggcaaaagcaccgccggccatcagcgctccctctcctctcactgccgcaaaacatggcaact                                                                 <  2:297249‑M2/251‑178 (MQ=255)
                                                                                                                                                                                         catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAAt                                                               <  2:144672‑M1/188‑1 (MQ=255)
                                                                                                                                                                                              cAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagttgctccagtggcttctgtttc                                                                                                                                                                             >  2:53481‑M2/1‑67 (MQ=255)
                                                                                                                                                                                              cAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc                                                                                                                                                                             <  1:53481‑M2/136‑70 (MQ=255)
                                                                                                                                                                                               aaagtcatcgggcattatctgaacataaaacactatcaataagttgaagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTACTACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAATGGCAgg                                                         <  2:465480‑M1/194‑1 (MQ=255)
                                                                                                                                                                                                    caccgggcattatcggaacataaaacactatcaaaaagttggattcattaccAAGGCGGGGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAATGGCAGGGAAt                                                     >  2:226474‑M1/53‑250 (MQ=255)
                                                                                                                                                                                                    agaCACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacgtggcaactgcagttcacttac                                                    <  2:488255‑M2/251‑191 (MQ=255)
                                                                                                                                                                                                        acaGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccg                                                <  1:925‑M2/251‑195 (MQ=255)
                                                                                                                                                                                                              tatctgaacataaaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAATGGCAGGGAATGTCGCCCTGGc                                          <  2:44315‑M1/209‑1 (MQ=255)
                                                                                                                                                                                                               gAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctca                                         >  1:259461‑M2/1‑50 (MQ=255)
                                                                                                                                                                                                                     aCATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccgg                                   <  1:263531‑M2/251‑208 (MQ=255)
                                                                                                                                                                                                                         aaGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGggagatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacg                               <  2:366232‑M2/251‑212 (MQ=255)
                                                                                                                                                                                                                          aaacactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAATGGCAGGGAATGTCGCGCTGGCAGCTGATGTAcc                              <  2:179147‑M1/221‑1 (MQ=255)
                                                                                                                                                                                                                            acactatcaataagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAATGGCAGGGAATGTCGCGCTGGCAGCTGATGTACCCg                            >  1:172867‑M1/29‑251 (MQ=255)
                                                                                                                                                                                                                                      taagttggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTATCCGAGACTGTGCAGGGTCCAACTCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAATGGCAGGGAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTcac                  <  1:348591‑M1/233‑1 (MQ=255)
                                                                                                                                                                                                                                      gAATCACCAGAATAAATAAAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatc                   <  1:197428‑M2/250‑224 (MQ=255)
                                                                                                                                                                                                                                       aaTCACCAGAATAAATAAAGTCGGTGggtgatgctgcccacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagcaaatcat                 <  2:221771‑M2/251‑226 (MQ=255)
                                                                                                                                                                                                                                            ggagtcattaccAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAATGGCAGGGAATGTCGCGCTGGCAGCTGATGTACCCGCCGGCGTCACACTGGc            <  1:188075‑M1/239‑1 (MQ=255)
                                                                                                                                                                                                                                              aGAATAAATAAAGTCGGTGggagatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatg          <  2:548873‑M2/251‑233 (MQ=255)
                                                                                                                                                                                                                                                 ataaataaAGTCGGTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggcc       >  2:263531‑M2/1‑16 (MQ=255)
                                                                                                                                                                                                                                                       cAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAATGGCAGGGAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAaaacaa  <  1:43927‑M1/249‑1 (MQ=255)
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                        
TGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTCTTTATTGGTAATGAGAATAATTAACAATTAAAGAGCGTCGCGAAAGAATAATGTGTCTCGACAGGGGAGACACAGTACGAATCGACATAAGGTGATCGTCTGAATCACCAGAATAAATAAAGTCGGTGATAGTAATACGTAACGATAAAGTAACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATAATGAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAATGGCAGGGAATGTCGCGCTGGCAGCTGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAA  >  NC_000913/1300802‑1301298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.