| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,199,869 | +GA :: IS3 (+) +4 bp | coding (935‑938/1128 nt) | intE ← | putative integrase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 315229 = | NA (NA) | 39 (0.680) +TC |
38/486 | 0.5 | 100% | noncoding (1/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 1199872 | 0 (0.000) | coding (935/1128 nt) | intE | putative integrase | |||||
| * | ? | NC_000913 | 1094245 = | NA (NA) | 55 (0.950) | 47/490 | 0.3 | 100% | noncoding (1258/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | 1199869 = | 0 (0.000) | coding (938/1128 nt) | intE | putative integrase | |||||
AGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAA > NC_000913/314987‑315453 | tcatgtgcggtgagaaattcaatgtggcgttgtgatgcttcaaggttcacaacgctactttgctccatcctttacctcgatcatcatgataacgatcggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTAccc < 2:200010‑M1/8‑1 (MQ=255) gtgagaaattcaatgtggcgttgagatgcttaaaggttcacaacgcttctttgctccatcctttccctcgatcatcatgataacgatcggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagtcctttgctcattgaatgtcgcaggtgaaccctctccccagccaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTg > 1:479431‑M1/234‑251 (MQ=255) atgtggcgttgagatgcttaaaggttcacaacgctactttgctccatcctttacatcgatcatcatgataacgatcggtttgttgttgtgctttatgaccaagtagtttttgtgtgtctaacccctattctttatacagacgttaagataaagacctttgctcatggagtgtcgcaggtgaaccctctccccagtcaattattgctaaatctctcgcttgaTCTTACCCAGCACTAGTGGACACGCGGCt < 1:261200‑M1/29‑1 (MQ=255) gagatgcttaaaggttcacaacgctactttgctccatcctttacctcgatcatcatgataacgatcggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa > 1:185859‑M1/212‑250 (MQ=255) agatgcttaaaggttcacaacgctactttgctccatcctttacctcgatcatcatgataacgatcggtttgttgttgtgttttacgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc > 2:581880‑M1/211‑251 (MQ=255) atgcttaaaggttcacaacgctactttgctccatcctttacctcgttcatcatgataacgatcggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc < 2:388951‑M1/43‑1 (MQ=255) tgcttaaaggttcacaacgctactttgctccatcctttacctcgatcatcatgataacgatcggtttattgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgtttagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct < 2:434777‑M1/44‑1 (MQ=255) actttgctccatcctttacctcgatcatcatgataacgatcggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATg > 1:17441‑M1/187‑251 (MQ=255) ctttgcttaatactttacctcgatcatcatgataccgatcggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagccgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcacttcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACAAGCGGCTAAGTGAGTAAACTCTCAATCAGAGGAGACTCACATg < 2:365267‑M1/65‑1 (MQ=255) ttacctcgatcatcatgataacgatcggtttggtgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATc > 1:355597‑M1/172‑250 (MQ=255) cggtttgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGc > 1:406755‑M1/147‑251 (MQ=255) tgttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACGGTATCAACCAGTAAAAATCCCCGTAAACAGCATTc > 1:199868‑M1/142‑250 (MQ=255) ttgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGcc < 1:330446‑M1/112‑1 (MQ=255) tgttgtgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCt < 1:456015‑M1/113‑1 (MQ=255) tgttttatgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAtt < 1:424359‑M1/118‑1 (MQ=255) tgaccaagtagtttttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt < 1:552177‑M1/125‑1 (MQ=255) ttgtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGc > 1:91958‑M1/113‑250 (MQ=255) gtgtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccacagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTg < 2:339987‑M1/141‑1 (MQ=255) gtgtctaacccctgttctttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCt > 1:249415‑M1/109‑251 (MQ=255) aacccctgttctttatacagaccttcagctaaagcactttgctcatggaatgtcgtaggagaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCAGAATTTCGCCGTGAAGCCCTGAAGCTTGCTGTACGc < 2:514053‑M1/149‑1 (MQ=255) gttctttatacagacgttcagataaagtccttttctcatggaatgtcgcaggtgaaccctcgccccagtcaagtcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGGAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAGCAACCAGTCAAAAACCCCGGAAACAGCACTCGCCGTAATCTCTCAGTGAAGCCCGGAAGCTTGCGGATCGCGTCGgt > 2:114969‑M1/96‑250 (MQ=255) tttatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTAc < 1:502767‑M1/160‑1 (MQ=255) tatacagacgttcagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGAATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTtacgg < 2:448359‑M1/162‑3 (MQ=255) cagataaagacctttgctcatggaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTg < 1:575138‑M1/174‑1 (MQ=255) aagagctttgctcatggaatgtcgcagttgaaccctctccccagtcaattcgtgctaaatctctcgcttgaTCTTACCCAGCAATAGTGTACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACTATTAAAATACCCCGTAAACAGCATACGGCTGAATTTCGCAGTGAAGCGCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCa > 1:246850‑M1/72‑251 (MQ=255) agacctttgctcatggaatgtcgcaggtgaacactctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAActa < 2:495634‑M1/179‑2 (MQ=255) gaatgtcgcaggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATcac < 1:316416‑M1/195‑1 (MQ=255) gcaggtgaaccctctccccagtcaattctagctaaatctctcgcttgaTCTTACCCATCACTAGTGGACCCGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGATGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAc < 2:335274‑M1/203‑1 (MQ=255) aggtgaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACa < 2:143459‑M1/204‑1 (MQ=255) gaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTgg < 2:344484‑M1/209‑1 (MQ=255) gaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTgg > 2:424359‑M1/43‑251 (MQ=255) gaaccctctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGACTGCATTTCGCAGTGAATCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGTCGCAGCCCGTGAACTCAGCCTTTATGAGTCACAACACTACAACTgg < 2:561551‑M1/209‑1 (MQ=255) ccctctccctgtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGCCAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGgcgc < 1:569578‑M1/212‑1 (MQ=255) ctctccccagacaattcttgctaaatctctcgcttgaTCTTACCCAGCAATGGTGGACACGCGCCTACGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCACCCCGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCAGTGTTCCTGCCGCAGCCCGTTAACTCAGCCTGTATGACTCCCAACTCTACAACTTgcgc < 2:414963‑M1/212‑1 (MQ=255) ctccccagtcaattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAg > 1:497491‑M1/36‑249 (MQ=255) caattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCaaa > 1:339987‑M1/27‑251 (MQ=255) aattcttgctaaatctctcgcttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGAAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCaaa < 1:153448‑M1/225‑1 (MQ=255) ttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGgc < 1:576199‑M1/210‑1 (MQ=255) ttgaTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACGCTACAACTGgc > 2:576199‑M1/5‑214 (MQ=255) | AGCGCCAATGGTTATATTCGGGCTTCTGGCTGGAAAAAATCGCCGGATATTGAGGATTATCAGGAACGCCCGGCGAATGGCTGGGATATTCGTGCTGAGGGCTATTTACCCGCCTGGCCGCAGCTTGGCGCAAGCCTGATGTATGAACAGTATTATGGCGATGAAGTCGGGCTGTTTGGTAAAGATAAGCGCCAGAAAGACCCGCATGCTATTTCTGCCGAGGTGACCTATACGCCAGTGCCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACAACTGGCGCAGTAAACAGCAAA > NC_000913/314987‑315453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |