| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,188,861 | C→T | V306I (GTA→ATA) | phoQ ← | sensor histidine kinase PhoQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,188,861 | 0 | C | T | 95.8% | 138.1 / ‑6.0 | 51 | V306I (GTA→ATA) | phoQ | sensor histidine kinase PhoQ |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base T (27/19); total (28/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTTGCCCATCACCTCGACAAAATCGTTCTGCTCACCGACAAAGCTGATCTCTGGCGAAATATCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTACCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTGTCGTAACGTTCGCGTTCACTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCTTCCAGTTCGCGGACTTCTTTT > NC_000913/1188622‑1189102 | gTTGCCCATCACCTCGACAAAATCGTTCTGCTCACCGACAAAGCTGATCTCTGGCGAAATATCGAGAGATATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATGGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTTATTTGCTCCAGCATTAGCGGCTCAGCAt < 2:198267/251‑1 (MQ=255) tGCCCATCACCTCGACAAAATCGTTCTGCTCACCGACAAAGCTGATCTCTGGCGAAATATCGAGAGCGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGCGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATc > 1:437338/1‑250 (MQ=255) gCCCATCACCTCGACAAAATCGTTCTGCTCACCGACAAAGCTGATCTCTGGCGAAATATCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCAc > 1:92683/1‑251 (MQ=255) gCCCATCACATCGACAAAATCGTTCTGCTCACCGACAAAGCTGATCTCTGGCGAAATATCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGCGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCAc > 1:396151/1‑251 (MQ=255) tCGACAAAATCGTTCTGCTCACCGACAAAGCTGCTCTCTGGCGAAATATCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGCGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCAt > 2:93943/1‑251 (MQ=255) aaTCGTTCTGCTCACCGACAAAGCTGCTCTCTGGCGAAATATCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTTGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGCTGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCCTCACTGACGCTCATCTTTTc > 1:545664/1‑250 (MQ=255) tCTGCTCACCGACAAAGCTGATCTCTGGCGAAATATCGAGAGAGATAATGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACg < 2:465444/250‑1 (MQ=255) gCTCACCGACAAAGCTGATCTCTGGCGAAATATCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGAAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGCCGCTCATCTTTTCACTACGc > 2:177125/1‑248 (MQ=255) aCCGACAAAGCTGATCTCTGGAGAAATATCGAGAGAGATTTTGACCCCTTTGCGTTGATACAATTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTAGCGGCCGAGCAATGTCACGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTACAGCATTAACGGATCAGCATAACTAACGATCAGCTTTTCACTACACagtaaac > 2:512650/1‑246 (MQ=255) agACAAAGCTGATCTCTGGCGAAATATCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGc > 2:330108/2‑251 (MQ=255) cAAAGCTGATCTCTGGCGAAATATCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGc < 1:335257/251‑1 (MQ=255) aaaGCTGATCTCTGGCGAAATATCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGAAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCg > 2:86115/1‑251 (MQ=255) aaGCTGATCTCTGGCGAAATATCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGCCCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCGGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTAAGCATCACTGCCGCTCATCTTTTCACTACGCAGAGAACGCAGCGt > 2:469142/1‑251 (MQ=255) aTCTCTGGCGAAATATCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTg > 2:469647/1‑251 (MQ=255) gAAATATCGAGAGAGATATTGACCCCTTTGCTTTGATACACTTTGGTCATCGCTGAGGTGAGATTGTCCAGCCGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTGGCAGCACCGc < 2:404395/251‑1 (MQ=255) aaaTATCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGcc > 2:443765/1‑251 (MQ=255) atatCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAg < 1:196829/251‑1 (MQ=255) atatCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAg < 1:99172/251‑1 (MQ=255) gaTATTGCCCCCTTGGCGTTGATCCCCTTGGTTCAGCGCGGAGGGGAGTTTGCCCAGCGGGGGGGCGCCCGGAGCCAGCTCGCGGCGGAGCAATGCCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTGGCTCCAGCATTATCGGCGCAGCATCCCTGACGCCCATCTTTTCACTACGCAGAGAACGCAGCTTACTTGGCAGCACCGCCAGTGGCGTTTTCa < 1:86115/251‑1 (MQ=255) ttGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGAGAGATTGTCCCTCAGTGGGACGACCGGGTGCCGCTCGCGGCTGAGCAATGTCCCGCCGCGCATAATGGCACTATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTTACGCTCCTCTTTTCACTACGCCGATAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCataat > 2:444919/1‑247 (MQ=255) tGACCCCTTTGGGTGGATACACGTGGTTAAGCGTGGGGGTGAGATTGGCCAGCGGGGGGGCGCCCGGATGCAGCCCGCGGCTGAGCAAGGCCCCGCCGCGCATCCTGGCACGATGATGGTAGTAGCCAATTTTCGGGGAAAGGCGTCTGATTTGCCCCAGCATTATGGGCTCAGCATCACGGACGCTCATCTTTTCACTCCGAAGAGATCGCATCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACt < 2:563777/250‑1 (MQ=255) tGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCCGCACCGCCAGTGGCGTTTTCAGACt > 1:503813/1‑250 (MQ=255) ttGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTc > 1:297831/1‑249 (MQ=255) ttGCGTTGATACACCTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCCTCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCTGTGGCGTTTTCAGACTATGGGTc > 2:328452/1‑249 (MQ=255) tGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGACCGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGCCTATGGGTCAgg > 2:94678/1‑251 (MQ=255) cGTTGATACCCTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGTATGCAGCTCGCGGCTGAGAAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGTTTATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTc < 1:94678/251‑1 (MQ=255) gTTGATACACTTTGTTCAGCGCTGTGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTAAGCATCACTGACGCTCATCTTTTCACTTCGCCGACAACGCAGCGTACTTTCCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCCGGTCg > 2:22800/1‑251 (MQ=255) cacacTTTGTTCAGCGCGGAGTTGAGATTGTCCAGCAGTGGGGCGCCCGGAGGCAGCCCGCGGTTGAGCAATGCCCCGCCGCGCTTATTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAAGGCGGCTTATTTGCTCCAGCATTACCGGCGCAGCATCCCTGACGCTCATCTTTCCACTACGCAGAGACCGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAg < 1:240654/250‑1 (MQ=255) ccgcTTTGTTAAGCGCTGAGGTGAGATTGTCCGGCGGGGGGGCGACCGGATGCAGCCCGCGGCTGAGCATTGCCCCGCCGCGCATACGGGCACGATGCAGGTAGTAGCAAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATTTTTTCACTACGCAGAGAACGCAGCGTATTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGc < 1:330108/248‑1 (MQ=255) ccatttgtttCAGCGGTGGGGGGAGATGGTCCAGCAGTGGGGCGACCGGATGCAGCCCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCATTTTGCTGTGAAATGCGGCTGATTTGCCCCAGCATTATCGGCCCAGCATCACTGACGCTCATCTTTTCACTCCGCAGAGAACGCGGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGc < 2:203245/243‑1 (MQ=255) acacTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGGGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTGGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCTTACTTGGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGc < 1:195258/251‑1 (MQ=255) cTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGGAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGcgtc > 2:341497/1‑251 (MQ=255) tCAGCGCTGAGGTGAGATTGTCCAGCGGTGGGGCGACCGGATGCAGCTCGCGCCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTACCGGCTCAGCATCACGGACCCTCATTTTTTCCCGCCGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACg < 1:469142/250‑1 (MQ=255) gtgaggggggatgttCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGTTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACCCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTg < 1:498654/237‑1 (MQ=255) cTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGCGCGTCGTACGGTATTTg > 1:547157/1‑251 (MQ=255) ggggggagttttcccggcgggggggCGCCCGGATGCCGCCCGCGTCTGAGCAAGGCCCCGCCGCACATCCTGGCACGATGCGGGTAGTAGCCAATTTGTTGGGAAATGCGGCTGATTTGCCCCAGCATTATCGGCTCAGCATCACGGACGCTCATCTTTTCCCAACGCAGAGAACGCGGCGTTCTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTGTc < 2:92683/230‑1 (MQ=255) gagaTTGTCCAGCAGTGGAGAGCCCGGATGCAGCTCGCGGCTGAGCAATGTCACGCCGCGCATACTGGCACGCTGCGGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCCCTCCGCAGAGACCGCAGCATACTTTGCCGCACCGCCCGTGGCGTTTTCAGCCTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTTTCGAAAc > 2:360233/1‑251 (MQ=255) gccggggggccgccgggATGCAGCCGGCGGCTGAGCAATGCCCCGCCGCGCATCCTGGCCCGATGCGGGAGGTAGCCAATTTGCTGTAAAATGCGGCTTATTTGCCCCAGCATTATCGGCGCAGAATCACTGACGCTCATCTTTCCACTCCGCAGAGAACGCAGCGTTCTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTGTCGTAACGTTCGCGTTc < 2:155393/236‑1 (MQ=255) ggggccgtaTGCAGCTCGCGGCTGAGCAATGCCCCGCCGCGCATCCTGGCCCGTTGCAGGTAGTAGCCAATTTGCTGGGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTGCGCTCCGCAGAGAACTCAGCGGTCTTTGCGGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTGGCGTAACGTTCGCGTTCACttttcaa < 2:190363/243‑4 (MQ=255) gcgctcggagcacgcgcgcgGCTGAGCAATGTCCCCCCGCGAATACTGGCTTGATGAAGGTAGTATCCAATTTGGTGTGAAATGCGGCTTATTTTCTCCAATATATGCGGCTCGGCTGCACTGCCGCGCGTCTTTTCACTCCCGAGAGAACGTAGCTTGCTTGGCAGCCCCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTGTCGTAACGTTCGCGTTCACTTTTTaa < 2:408992/235‑1 (MQ=255) gACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTGTCGTAACGTTCGCGTTCACTTTTTAAc > 1:211016/1‑250 (MQ=255) gtGCAGCTCGCGGCTGAGCAATGTCCGGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAAGGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTCCTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTGTCGTAACGTTCGCGTTCACTTTTTAACAATCGGt < 1:443765/250‑1 (MQ=255) cAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCCCGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTGTCGTAACGTTCGCGTTCACTTTTTAACAATCGGTTc > 2:42321/1‑250 (MQ=255) gAGCAAGGTCCCGCCGCGCATACGGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAAGGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCTTCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCTCCGCCAGTGGCGTTTTCAGACTATGTGTCAGGTCGGTGAGCGTCGTACGGTATTTGTCGTAACGTTCGCGTTCACTTTTTAACAATCGGTTCAGGTTTCGTAcc < 1:93943/250‑1 (MQ=255) cccGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTGTCGTAACGTTCGCGTTCACTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTcc > 1:135379/1‑250 (MQ=255) ccGATGGAGGTAGTAGCAAATTTGTGGTGAAATGCGGCTTATTGGCTCCAGCTTTATCGGCTCAGCATCACGGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTATTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTGTCGTAACGTTCGCGTTCACTTTTTAACAATCGGTTCAGGTGTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTg < 1:22800/250‑1 (MQ=255) cAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTGTCGTAACGTTCGCGTTCACTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTg > 1:472667/1‑250 (MQ=255) caaTGCGGCTGAGTTGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTg < 1:333249/84‑1 (MQ=255) tttGCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCCGACTATGGGTCAGGTCGGTGAGCGACGTACGGAATTTGTCGTAACGTTCGCGTTCCCTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCTTCCCGTTCGCGGAct > 1:300328/1‑251 (MQ=255) gCTCCAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTGTCGTAACGTTCGCGTTCACTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCTTCCAGTTCGCGGActtct > 2:489200/1‑251 (MQ=255) ccAGCATTATCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTGTCGTAACGTTCGCGTTCACTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCTTCCAGTTCGCGGACTTCtttt > 2:583526/1‑251 (MQ=255) | GTTGCCCATCACCTCGACAAAATCGTTCTGCTCACCGACAAAGCTGATCTCTGGCGAAATATCGAGAGAGATATTGACCCCTTTGCGTTGATACACTTTGTTCAGCGCTGAGGTGAGATTGTCCAGCAGTGGGGCGACCGGATGCAGCTCGCGGCTGAGCAATGTCCCGCCGCGCATACTGGCACGATGCAGGTAGTAGCCAATTTGCTGTGAAATGCGGCTGATTTGCTCCAGCATTACCGGCTCAGCATCACTGACGCTCATCTTTTCACTACGCAGAGAACGCAGCGTACTTTGCAGCACCGCCAGTGGCGTTTTCAGACTATGGGTCAGGTCGGTGAGCGTCGTACGGTATTTGTCGTAACGTTCGCGTTCACTTTTTAACAATCGGTTCAGGTTTCGTACCAGACTGGTCAGTTCTCGCGTTGTGGCTGGATTGAGCAATTCGCGGTTATGTTCTTCCAGTTCGCGGACTTCTTTT > NC_000913/1188622‑1189102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |