Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,137,212 C→T R313R (CGC→CGT flgI → flagellar P‑ring protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,137,2120CT98.6% 233.9 / NA 72R313R (CGC→CGTflgIflagellar P‑ring protein
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base T (27/43);  total (28/44)
Fisher's exact test for biased strand distribution p-value = 3.94e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGCCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGATCAGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCG  >  NC_000913/1136972‑1137457
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                             
ccGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAgcggc                                                                                                                                                                                                                                                      <  1:403193/250‑1 (MQ=255)
ccGCTTCCTTACCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGGAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACGGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAgcggcg                                                                                                                                                                                                                                                     <  2:43634/251‑1 (MQ=255)
   cTTCCTTGCCGATATTCAGCCTATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGtt                                                                                                                                                                                                                                                 >  1:200346/1‑251 (MQ=255)
    ttCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACAGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGCCAGAGcggcgggtt                                                                                                                                                                                                                                                 >  2:5624/1‑248 (MQ=255)
     tCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGGGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGtt                                                                                                                                                                                                                                                 <  2:246229/249‑1 (MQ=255)
          gCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGccgc                                                                                                                                                                                                                                           >  1:363519/1‑247 (MQ=255)
                 ttCAGCATATGCAGGCTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTAGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCCGCCAGCCAGATCCACCGTTTGGTGGTGGACAGCCTGTGGTTACTCCAAAAACGCAGATCGATTTACGTCAGAGcggcggctttgtgcacaaccgc                                                                                                                                                                                                                                    >  2:522759/1‑235 (MQ=255)
                  tCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGcggcgggtttccgccaaacggcc                                                                                                                                                                                                                                   >  2:424369/1‑234 (MQ=255)
                   cAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACg                                                                                                                                                                                                                                <  1:50991/251‑1 (MQ=255)
                     gAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTTGCTTCCAAGCGTACGtt                                                                                                                                                                                                                              >  1:447371/1‑251 (MQ=255)
                       atatGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCGGCCAACCGTACGTTcc                                                                                                                                                                                                                            >  1:351370/1‑251 (MQ=255)
                                   aTGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTc                                                                                                                                                                                                                <  1:479718/251‑1 (MQ=255)
                                    tGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGGTCGCGGCAAAGGGGACGTTCCAGcgcccgccccc                                                                                                                                                                                                               >  2:269576/1‑248 (MQ=255)
                                       cACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAAt                                                                                                                                                                                                             <  2:200346/250‑1 (MQ=255)
                                           ccGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACgt                                                                                                                                                                                                      <  1:557333/251‑1 (MQ=255)
                                           ccGCAGGACGCTAAAGGAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACGCCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACgt                                                                                                                                                                                                      <  2:456794/251‑1 (MQ=255)
                                              cAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGGTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACgtggt                                                                                                                                                                                                   <  1:85260/251‑1 (MQ=255)
                                               aGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAACGGACGTTCCCACGCCAGCCTCAAAAACgtgggg                                                                                                                                                                                                  >  1:447064/1‑249 (MQ=255)
                                                 gACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCCAAACGGACGTTCCAGCGCCCGCCTCAATaaactggggcg                                                                                                                                                                                                  >  1:218639/1‑242 (MQ=255)
                                                   cGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCCCAGCGTACGTTCCCACGCCAGCCCCAATAACCTGGTgcgcg                                                                                                                                                                                              >  1:150099/1‑251 (MQ=255)
                                                          gtagtGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCaa                                                                                                                                                                                     <  1:399786/251‑1 (MQ=255)
                                                               gATTAACTCGCGCACCGGTTCGGTGGTGATGAAGCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCGCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATgcg                                                                                                                                                                                 <  2:259034/250‑1 (MQ=255)
                                                                         cgcACCGGTGCGGGGGTGATGAATCGCGAAGTGACCCTAGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTGCGCTGCAAAGCGTACGTTCCAGCTCCAGCCTCAATAACGGGGTGCGCGCGCTCAATGCTCTGGGCGCTAc                                                                                                                                                                      <  1:188998/251‑1 (MQ=255)
                                                                           cACCGGTTCGGTGGTGCTGACTCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCTCTGCCCAGCGGGCGTTTCAGCGCCCGGATCAATAAACGGGGGGCCGCGCTCCAATCGCTGGGCGCTACGc                                                                                                                                                                    >  1:511974/1‑251 (MQ=255)
                                                                            cccGGTTCGGTGGTGAGGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCATCCAGATACACCGTTTGGTGGTGGACATACTGTGGTGACTCCACAAACGCAGATCGATTTACGTCAGAGCGTCGGTTCGCTGCAAAGCGTACGTTCCATGGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGcc                                                                                                                                                                   <  1:392409/250‑1 (MQ=255)
                                                                            aCCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGcc                                                                                                                                                                   <  1:55760/251‑1 (MQ=255)
                                                                            aCCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCCCTGCAAAGAGGACGTTCCAGCGCCAGCCTCCATAAAGTGGTGCGCGCGCTCAAAGCGCAGGGCGCTACGcc                                                                                                                                                                   >  1:302490/1‑251 (MQ=255)
                                                                              cGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAACGTACGTTCCCGCGCCCGCCCCACAAACGAGGTgcgcgcgcccacagcgccgggggcgacgcccg                                                                                                                                                                   >  2:55549/1‑227 (MQ=255)
                                                                                    ggtggtGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGATGCCAAGAGGTCGGTTCCGCGCCCGCCCCCATAACGTGGGGGCCGCGCCCAATTCGCCGGGCGCTAccccccggggtc                                                                                                                                                           >  2:487502/1‑240 (MQ=255)
                                                                                           atgaATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTc                                                                                                                                                    <  2:65972/251‑1 (MQ=255)
                                                                                             gaATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCCAAGCGGACCTTCCAGCGCCCGCCCCCATAAAGTGGGGCGCGGGCTCCATGCGCTGGGCGCTACGCCGGTGGGTCTGATGTccc                                                                                                                                                  >  1:194520/1‑250 (MQ=255)
                                                                                             gaATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCa                                                                                                                                                  <  2:447371/251‑1 (MQ=255)
                                                                                                     aaGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGcaa                                                                                                                                         <  1:424369/251‑1 (MQ=255)
                                                                                                      aGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGcaat                                                                                                                                        <  1:326180/251‑1 (MQ=255)
                                                                                                          aCCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGGTCGCTGCAAAGCGGACGGTTCAACGCCAGCCTCAATAACGTGGTGGGCGCGCGCAAAGCGCCGGGGGCGACGCCGGGGGATCTGagatgcatcatgccatcac                                                                                                                                      >  2:466081/1‑232 (MQ=255)
                                                                                                                gACAGCTGCGCGGTAGCGCAGGGGAAACTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGGGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAg                                                                                                                              <  1:522759/251‑1 (MQ=255)
                                                                                                                    gCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCg                                                                                                                          <  2:388577/251‑1 (MQ=255)
                                                                                                                    gCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCg                                                                                                                          <  1:536445/251‑1 (MQ=255)
                                                                                                                     cTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATCCACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCTAAGCGTACGTTCCAGCGACAGCCACAATAACGTGGGGCGCGCGCTCCAAGAGATCGGCGCGACGCCGACGGTACTGATGTCCATACTTCAAACAACGCAAAGGGCgg                                                                                                                         >  1:579950/1‑251 (MQ=255)
                                                                                                                     cTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCCGCGCCAGCCTCCATAACGTGGTGCGCGCGCCCCAAGCGCTGGGCGCTACGCCGGTGGGTCTGATGTCCCTACTTCAATCCATGCCAAGAGCgg                                                                                                                         >  1:44957/1‑251 (MQ=255)
                                                                                                                           ggTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTc                                                                                                                  <  2:480198/251‑1 (MQ=255)
                                                                                                                            gTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCt                                                                                                                 <  1:269576/251‑1 (MQ=255)
                                                                                                                              aGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATTTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCGGAATAACGTGGTGCGCGCGCGCAATGCGCGGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAACGCAAAGGGCGGGATGTCTGc                                                                                                               <  2:200009/251‑1 (MQ=255)
                                                                                                                              aGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATTCTGCAATCAATGCAAAGTGCGGGATGTCTGc                                                                                                               <  1:147583/251‑1 (MQ=255)
                                                                                                                               gcgcAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGGTCTCTGCCAAGCGTAAGTTCCAAAGCCAACCCCACTAACGTTGTGGGCGCGCCCACTGCGCCGGGCGCAACCCCCAGGGATCTTATGTACATACTGCCAACCAATCAAAGTGggggggttctgcg                                                                                                               >  1:18035/1‑242 (MQ=255)
                                                                                                                                 gcAGGGGAATCTCTCAGCAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTGGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTATGTTCCAGCGCCAGCCTCAATAACGTGTTGCGCGCGCTCAATGCGCTGGGCGTTTCGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCggg                                                                                                            <  1:332021/251‑1 (MQ=255)
                                                                                                                                   aGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGGTCGCCCCAAAACGTCCGTTCCTGCGCCCGCCCCAAAAACGTGGGGCGCCCGCCCAATGCGCTTGGCGCCTCGCCGGAGGAGCTGGTGTCCATTCTGCAATCACTGCaaaaggcgggggggctgcgggcg                                                                                                           >  2:174697/1‑231 (MQ=255)
                                                                                                                                              tcAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGGTCGCTTCAAAGCGTACGTTCCAGCCCCCGCCTCACTAACTTGGTGCGCGCGCTCCAAGCGCTTGGCGCCCCGCCCATGGAGCTGATGTCACTACTGCAACCACTGCAAAGAGAGGGATGGCTGCGGGcccaaacgggact                                                                                               >  2:226305/1‑239 (MQ=255)
                                                                                                                                                   aaCAGTTATTCGTCAGGCCAATGTCAGCCAGCCAGATACACCGGTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATGTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCGGCGGGCAAAACGGGAAatcatc                                                                                           <  2:91045/250‑1 (MQ=255)
                                                                                                                                                   aaCAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCt                                                                                          <  1:139678/251‑1 (MQ=255)
                                                                                                                                                    aCAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATCCACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCtg                                                                                         <  2:449598/251‑1 (MQ=255)
                                                                                                                                                          aaTCGTCAGGCCAATGTCAGCCAGCCAGAGACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTgatgat                                                                                    <  1:541932/250‑1 (MQ=255)
                                                                                                                                                             cGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGATCAg                                                                                 <  1:351858/250‑1 (MQ=255)
                                                                                                                                                              gTCAGGCCACTGTCAGCCAGCCTGATACAACGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCACTGCAAAGCGAACGTTCCAGCGCCCGCCTCCAAAACGTGGTGGGCGCGCTCAAAGCCCCGGGGGCTTAGCCCGTGGGGCTTATGTCCATACTGCACTCAAAGGCAAGTGCGGGCTGGTTTCGGGCAAAAATGGGAatacttttatgggcagcg                                                                               >  1:476798/1‑235 (MQ=255)
                                                                                                                                                                cAGGCCAATGTCAGCCAGCCAGCTCCACCGTTTGGTGGTGGACAGTCTGTGGTTACTCCACAAACGCAGATCTATTTGCGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCATCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGGGCGGGATGTCTGCGGGCAAAACTGGAAATCACCTGATGATCAGcta                                                                              <  2:498813/250‑3 (MQ=255)
                                                                                                                                                                cAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGATCAGCGa                                                                              <  1:386873/250‑1 (MQ=255)
                                                                                                                                                                     cAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAACGGACGTTCCAGCGCCACCCCCCATAACAGTGAGCGCGCGCCCAAAGCGCTGGGCGCGTCGCCGCTGGATATGGTGTCCCTACTGACATCAATGAAAAGTGCGGGGGGGTTGCGGGCCTAACTGGAACACACCGGATTATCAGCGACAGcc                                                                         >  2:397316/1‑249 (MQ=255)
                                                                                                                                                                           cagccagcCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGAGTTACGTCAGAGCGGCTGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAAGAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGGTCATCGACAGTAAactact                                                                  <  2:490695/251‑1 (MQ=255)
                                                                                                                                                                              ccagccagATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGGTTCCTTCCAAACGGCCGTTCCAAAGCCCACCTCAAAAACGTGGGGCCCGCGCCCACATCGCCCGGCGCCCCGCCGATGGATCAGATGGCCCTACTGCAATAAATTGACAGGGCGGGGTGTATCAGGGCAAAAATTGAAATCATCTGTTGATCAGGGACAGaaaaacaatggc                                                               >  2:34257/1‑243 (MQ=255)
                                                                                                                                                                                    agATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGATCAGCGACAGCAAACTACTGGCAAGTGc                                                         <  1:553897/251‑1 (MQ=255)
                                                                                                                                                                                        acacCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGATCAGCGACAGCAAACTACTGGCAAGTGCGGcc                                                     <  1:175110/251‑1 (MQ=255)
                                                                                                                                                                                            cGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCCGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGGTCCCGCGCCCGCCCCAATAACGTGGTGCGCGCGCCCCAAGCGCTGGGCGCTAAGCCGATGGGGATGATGTCCATACTGCAATCAAAGCAAAGGGCGGGGAGGCTGCGGGCAAAACTGGAAATAATCTGATGAGCAGCGAACGCAAACTACCTGCAAGTGCgggccggg                                                 >  2:535728/1‑245 (MQ=255)
                                                                                                                                                                                                       ggACAGACTGTGGTTACTCCAAAAACGCAGATCGATTTACGGCAGAGCGGCGGTTCGCTGCAAAGCGTACGTGCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGGGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGATCAGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGAGGCGCAATc                                       <  2:532194/250‑1 (MQ=255)
                                                                                                                                                                                                              cTGTGGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCAGACTGCAATCAATGCAAAGTGCGGGATGGCTGCGGGCAAAACTGGAAATCATCTGATGATCAGCGACAGCAAACTACTTGCAAGTGCgg                                                       <  2:198036/227‑1 (MQ=255)
                                                                                                                                                                                                               tgtgGTTACTCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTTGCTGCAAAAAGGACAGTCCAGCGCCCGCCCCAATAACGAGGTGGGCGCGCCCAATGCGCCGGGCGCCACGCCCGTGGATCTTGTGTCCATACTTCAATCAATTCAAAGTGCGGGGGTGCTGCGGGCAAAACTGGAAATCAACTGTTGGACAGCGACAGCAAAATCCCGGCAAGAGCGGCCTGGGGTGGGCAATCACTccaacg                              >  2:151917/1‑246 (MQ=255)
                                                                                                                                                                                                                        tCCACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGGACGTTCCAGCGCCAGCCTCAATAAAGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGATCAGCGACAGCAAAATACTGGCAAGGGCGGCCTGGGGTGCGCAATCACTCCACGAACTAAAggg                     >  1:180632/1‑250 (MQ=255)
                                                                                                                                                                                                                        cccACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGATCAGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGATCTAAAGGc                     <  2:281192/250‑1 (MQ=255)
                                                                                                                                                                                                                         ccACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGATCAGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGc                     <  2:302490/250‑1 (MQ=255)
                                                                                                                                                                                                                         ccACAAACGCAGATCGATTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTAATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGATCAGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAgg                      <  1:249520/249‑1 (MQ=255)
                                                                                                                                                                                                                              aaCGCAGATCGAGTTACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGACGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGATCAGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGc               <  1:391563/251‑1 (MQ=255)
                                                                                                                                                                                                                                        gagttACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGGTCCAGCGCCAGCCTCAATAACGTGGGGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCAGACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGAGCAGCGACAGCAAACTACTGGCAAGTGCGGCCGGGGATGCTCAATCACTCAACGAACTAAATGTCAAAGCGGGCGAAGAt     <  2:359487/248‑1 (MQ=255)
                                                                                                                                                                                                                                            tACGTCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGATCAGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCcg  <  2:441163/250‑1 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                             
CCGCTTCCTTGCCGATATTCAGAATATGCAGGTTAATGTCACCCCGCAGGACGCTAAAGTAGTGATTAACTCGCGCACCGGTTCGGTGGTGATGAATCGCGAAGTGACCCTCGACAGCTGCGCGGTAGCGCAGGGGAATCTCTCAGTAACAGTTAATCGTCAGGCCAATGTCAGCCAGCCAGATACACCGTTTGGTGGTGGACAGACTGTGGTTACTCCACAAACGCAGATCGATTTACGCCAGAGCGGCGGTTCGCTGCAAAGCGTACGTTCCAGCGCCAGCCTCAATAACGTGGTGCGCGCGCTCAATGCGCTGGGCGCTACGCCGATGGATCTGATGTCCATACTGCAATCAATGCAAAGTGCGGGATGTCTGCGGGCAAAACTGGAAATCATCTGATGATCAGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCG  >  NC_000913/1136972‑1137457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: