New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 275149	NA (NA)	40 (0.680)	37/492	0.6	100%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	577188 =	0 (0.000)					intergenic (‑363/‑210)	nmpC/essD	putative outer membrane porin NmpC/putative phage lysis protein

CTCTATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGGCTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGTGGGGTTATGAAATCCATGGATAAGTTAACAACGGGTGTCGC  >  NC_000913/576948‑577432                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                     ccagcggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGttt                                                                                                                                                                                                                                             <  1:338625‑M2/10‑1 (MQ=255)     gggataaggtcgccggccatttccagccttggggtaaaccggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcagcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcaggtacttgttcgcaccttccTTAGTGGTTtacgta                                                                                                                                                                                                                                        <  2:435927‑M2/15‑1 (MQ=255)       gataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcagatcagggacttgttcgcaccttccTTAGTGGTTtacgtacg                                                                                                                                                                                                                                      <  1:454366‑M2/17‑1 (MQ=255)          aaggtcgccggacattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTaa                                                                                                                                                                                                                                   <  1:26856‑M2/20‑1 (MQ=255)           aggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTaaa                                                                                                                                                                                                                                  <  1:119049‑M2/21‑1 (MQ=255)                 ccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTg                                                                                                                                                                                                                            <  1:352888‑M2/27‑1 (MQ=255)                    gccattaccagccttggggtaaaacggctcgatgacttccaccatcttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGtt                                                                                                                                                                                                                         >  1:256126‑M2/222‑251 (MQ=255)                       attaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATg                                                                                                                                                                                                                      <  1:355037‑M2/33‑1 (MQ=255)                       attaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATGGGTTATg                                                                                                                                                                                                                      <  1:197834‑M2/33‑1 (MQ=255)                          accagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgacggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgccccttccTTAGTGGTTTACGTACGTAAAAAATTgg                                                                                                                                                                                                                           >  2:571616‑M2/216‑243 (MQ=255)                          accagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTgg                                                                                                                                                                                                                           <  1:571616‑M2/28‑1 (MQ=255)                          accagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTg                                                                                                                                                                                                                   <  1:427410‑M2/36‑1 (MQ=255)                                                 cgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagtttatgactcatgatgaaccctgttctatggctccagattacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTGTTTACGGACGTAAAAAATTGGTTATGCGGTTAAGAGTGGTTTCTTCGTca                                                                                                                                                                                              <  2:107756‑M2/57‑1 (MQ=255)                                                            accatgttttaccatagcagaatctgctccatgcatgacaagaaaatctcttttctggtctgacggcgcttactgctgcattcactgtcggcgaaggtaagtggatgactcatgatgaaccctgttctctggcaccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCAACCAGCTTAAAcc                                                                                                                                                                                 >  1:496155‑M2/182‑251 (MQ=255)                                                                  ttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGt                                                                                                                                                                           >  1:26287‑M2/176‑251 (MQ=255)                                                                      gccatggcataatctgcaccatgcgggacaataaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaaggtgatgactcatgatgaaccctgtgctatggctccagatgacaaacatgatctcatatcagggacttggtcgcaccttccTTAGTGGTGTACGTACGTAAAAAATTGGTTATGCTTTTAAGAGTGGTTTCTTCGTCACACAGCTTAAACACGccgtaga                                                                                                                                                                        <  1:399968‑M2/79‑4 (MQ=255)                                                                       ccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAATCCCGCCGTCGAGc                                                                                                                                                                      <  2:105780‑M2/81‑1 (MQ=255)                                                                       ccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGc                                                                                                                                                                      <  1:14936‑M2/81‑1 (MQ=255)                                                                         atggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTACACCCGCCGTCGAGCgg                                                                                                                                                                    >  1:108564‑M2/169‑251 (MQ=255)                                                                               gaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGGTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGttttt                                                                                                                                                              <  2:281280‑M2/89‑1 (MQ=255)                                                                                                             ctgttcaggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctattgctccagatggcaaacatgatctcatatcagggacttgttcgctccttccTTAGTGGTTTACGTACGTAAAAAATTGGTGATGCTGTTAAGAGTGGTTACTTCGTCACACATCTTAAACCCGCCGGCGGGCGGGTGTTTCCATTTGTTGAGTCACGATAATAGCTGa                                                                                                                                  <  2:80134‑M2/117‑1 (MQ=255)                                                                                                                 tctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAAccc                                                                                                                            >  1:442893‑M2/129‑251 (MQ=255)                                                                                                                    ggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccGTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCa                                                                                                                           <  2:26287‑M2/124‑1 (MQ=255)                                                                                                                     gtatgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATa                                                                                                                        <  2:167067‑M2/127‑1 (MQ=255)                                                                                                                      tctgacggagcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccggatgacaaacatgatatcatatcagggccttgttcgcacattccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCTTTTTTTGAGTCTCGATATTAGCTGATACCCCAATAc                                                                                                                       >  2:509853‑M2/124‑251 (MQ=255)                                                                                                                          acggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTg                                                                                                                    >  2:12213‑M2/120‑250 (MQ=255)                                                                                                                            ggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGt                                                                                                                 >  2:64468‑M2/118‑251 (MQ=255)                                                                                                                               gcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttacTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTAt                                                                                                              >  1:171144‑M2/115‑251 (MQ=255)                                                                                                                                   actgctgaattcactgtcggcgaaggtaagttgatgaatcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCAc                                                                                                          >  2:469561‑M2/111‑251 (MQ=255)                                                                                                                                     tgctgaattcactgtcggcgaaggtaagttgatgactcatgatgcaccttgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTAATTCGTCACACAGCTTAAACCCGACGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGGTATTAGCTGATAACCCAATCCCTGAGTAATTCACTg                                                                                                        >  2:396241‑M2/109‑251 (MQ=255)                                                                                                                                               actgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTc                                                                                              >  1:10824‑M2/99‑251 (MQ=255)                                                                                                                                                       cgaaggtacgttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGt                                                                                      >  1:470183‑M2/91‑251 (MQ=255)                                                                                                                                                                             gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTa                                                                <  1:64468‑M2/183‑1 (MQ=255)                                                                                                                                                                                          ctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTc                                                   >  1:479471‑M2/56‑251 (MQ=255)                                                                                                                                                                                                  ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGt                                           <  1:1194‑M2/204‑1 (MQ=255)                                                                                                                                                                                                     gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGCCTCCGAGTCTGTTACGTTTCGTAGTATTCTCTCAATTTACACCCGCTTTGTCTGCGAGGTggg                                        >  2:200134‑M2/45‑251 (MQ=255)                                                                                                                                                                                                        gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGTGGGGtt                                     >  1:425717‑M2/42‑251 (MQ=255)                                                                                                                                                                                                                             gggacttgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGTGGGGTTATGAAATCCATGGATAAGtt                 >  2:467167‑M2/21‑250 (MQ=255)                                                                                                                                                                                                                                   tgttcgcaccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGTGGGGTTATGAAATCCATGGATAAGTTaacaac           <  1:280960‑M2/236‑1 (MQ=255)                                                                                                                                                                                                                                           ccttccTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATGACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGTGGGGTTATGAAATCCATGGATAAGTTAACAACGGGTgtcac  >  1:215983‑M2/7‑249 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                     CTCTATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGGCTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGTGGTTACTTCGTCACACAGCTTAAACCCGCCGTCGAGCGGGTTTTTCCATTTTTTGAGTCTCGATATTAGCTGATAACCCAATACCTGAGTTATTCACTGACTCCGAGTCTGTTACGTTTCGTAGTATTCCCTCAATTTACACCCGCTTTGTCTGCGAGGTGGGGTTATGAAATCCATGGATAAGTTAACAACGGGTGTCGC  >  NC_000913/576948‑577432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.