New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4542690	19 (0.320)	10 (0.180)	8/474	2.9	29.3%	intergenic (+57/‑425)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
	?	NC_000913	= 4542986	30 (0.530)					intergenic (+353/‑129)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit

TTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATT  >  NC_000913/4542448‑4542929                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                ttAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGCAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact                                                                                                                                                                                                                                         >  1:572678‑M1/1‑243 (MQ=255)  tAAGGCATGCTTGCGGTTATGAATAGGCGGAGGGTGGTGCAGATACTCGTTACGTTCGGGGTTATCTCGGGCATCGGAATATTCGCCATACTGGGCGTTATACCGCCAGTAATACTGCTCGTTGTGCCGGATTATGGGAAAGAAATAATCTCATAGACGAAAAATTAGAAAGAGAAGAGGTTTGATTTAACTTATTGATAATCAAGTT‑AAAAAAACAAATAAATACAAGAAAATTGGGGCCAttttgactc                                                                                                                                                                                                                                        >  2:587457‑M1/1‑242 (MQ=255)             tGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACAGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCctaaat                                                                                                                                                                                                                              >  1:451748/1‑250 (MQ=255)                 gTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatc                                                                                                                                                                                                                         <  1:458153‑M1/251‑25 (MQ=255)                   tATGAATTGGCGGAGGGGGGTGAAGATACTCGTTTAATCCAGTTTTACCCCGGGCAACGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACGTATTGATAATAAAGTTAAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatc                                                                                                                                                                                                                         <  2:504930‑M1/250‑25 (MQ=255)                                              acacttttatttcAGGATTCTCTCGGGCATCGAAATATGCGCCATACTGTGCTTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgacttatagaggcaagcatcgcggacaaactttttcagtttatttgttg                                                                                                                                                                                            <  2:476278‑M1/246‑54 (MQ=255)                                                             gATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaaac                                                                                                                                                                              >  1:263802/1‑249 (MQ=255)                                                                 aTCTCGGGCATCAAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCa                                                                                                                                                                          <  1:342489/250‑1 (MQ=255)                                                                                atatTCGCTATACGTTTCGTTATACCGCAAGTAATGCTGTTCGTTTTGCTGGAGTATGGGAAAGAAATAATCTCATAAACGAAAATTTAAAAAGAGAAGAGGTTTGAGTTAACGTATTGATAATAAAGTT‑AAAAAAACAAAGAAATACAAGACAATGGGGGCCAttttgacgcatagaggaaagcatcgcggacaaactttttcagtttatttgtttgcttaatattctattgttagctttatttatagat                                                                                                                                                          <  1:333405‑M1/251‑88 (MQ=255)                                                                                     cGCCATACTGTGCTTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTAGTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgttta                                                                                                                                                     <  1:537536‑M1/251‑93 (MQ=255)                                                                                     cGCCATACTGTGCGATATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAACTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGATTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttctttatagatgttt                                                                                                                                                      >  2:537536‑M1/1‑159 (MQ=255)                                                                                         aTACTGTGCATTATACCTCCAGTAATGCTGCTCGTTTTGCAGGATTATGGGAAAGACATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAattat                                                                                                                                                 >  2:425056/1‑251 (MQ=255)                                                                                           tcggtgctttaagccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTTATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTTGGGCCAAACTGTCCATATCATAAATAAGTTACGGATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCGAACGGTTTGATATGTAAattatt                                                                                                                                                <  2:572288/237‑1 (MQ=255)                                                                                           aCTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                                                                                                                               >  2:21914/1‑251 (MQ=255)                                                                                                    tataCCTCCAATAATGCTGCTAATTTTGCCGGATTATGGGAAATAAATAATCTCATAAACAAAAAAATAAAAAGAGAAGAGGTTTGATTTAACTTATTGAAAATAAAGTT‑AAAAAAACAAATAAATCAAATACAATTGGGACCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTTTAAAACTAAAAAAAGCATCTAACTGTTTGATATGTAAATAATTTCTATTGTa                                                                                                                                       <  2:327274/250‑1 (MQ=255)                                                                                                               tAATGCTGCTCGTTTTGCCGGATTATGGGACAGATATACTCCCATAAACGAAATCTTAAAAGGCGAAGAGGATTGCTTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcac                                                                                                                           >  2:246115/1‑251 (MQ=255)                                                                                                                aaTGATGCACGTTTTGTAGGTTTATGGTAGAGAATTAATCTTATATACATAAAATTAAAAAGAGAAGAGTTTTGATTTATCTTATTGATAATAAAGTT‑AAAAAAACAAATAAACACAAGATATTTTGTGTCAAAATTTACATATCAAAAATAAATTGCGTATTTTGTCTCAATTATAAAAATATTAATTAACGACAAAAAGTATCTAAGTGTTTGCTATTCAAATTATTCCTATTGTTAATTAGTTTcaca                                                                                                                          <  2:378711/251‑1 (MQ=255)                                                                                                                   gctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCa                                                                                                                       <  1:249220/251‑1 (MQ=255)                                                                                                                     tgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAcc                                                                                                                     >  2:145847/1‑251 (MQ=255)                                                                                                                                                     atCTCATAAACGAAAAATTAAAACGAGAAGAGGTTTGCTTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgaataatagaggaaagcatcgcggacaaattttttcagtttatttgttggcttaatattctattgttatctttatttatagctgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgcgtcgagccacagaaacgtt                                                                                       >  2:585140‑M1/1‑95 (MQ=255)                                                                                                                                                             aaCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCAATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGc                                                                              >  2:557468/1‑250 (MQ=255)                                                                                                                                                                  aaaaTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTc                                                                        >  1:183859/1‑251 (MQ=255)                                                                                                                                                                     aTTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTc                                                                     <  1:185697/251‑1 (MQ=255)                                                                                                                                                                                  gagGGTTGCTTTACCTTATTGATAATAAAGTT‑AATCACCCAAATAAATACACGACAATTGGGGCCAAACTGTCCATATCATAAATACGTTACGTATTTTTTCTCAAGCATAAAAATATTCAAAAACGACAAAAAGCATCTAACTGTTTGCTATGTAAATTATTTCTATTGTAAATTAATTTAAAATCACCTCCGCTATATGTACAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTTTTCTCTcc                                                         >  2:253097/1‑250 (MQ=255)                                                                                                                                                                                                            aaaGTT‑AAAAAAACAAAAAAATACAAGACAATTTGGTCCAAACAGTCCATATCATAAATAAGTTACGTATTGTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCAACTAACTGTTTGATATGTAAATTATTTCGATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACTTTTCTGTTGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCCCCTCATGCAATATAAAcct                              <  2:464840/251‑3 (MQ=255)                                                                                                                                                                                                              aGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCt                            >  1:298156/1‑251 (MQ=255)                                                                                                                                                                                                                tt‑AAAAAAACAAATAAAAACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggcttaatattctattgttatctttatttatagatgtttatattgcatgaggtggtttttggagagaagaatgaggaagatgcgtcgagccacagaaacgttagctttacatatagcggaggtgatgtgaaattaatttacaatagaaataatttacatagc                           <  2:434472‑M1/250‑215 (MQ=255)                                                                                                                                                                                                                                     aaGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTAGAAATAAAGATAACAATAGaa      <  1:494924/251‑1 (MQ=255)                                                                                                                                                                                                                                          aaTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATAtt  >  2:324852/1‑250 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                TTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTT‑AAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGTTTCTGTGGCTCGACGCATCTTCCTCATTCTTCTCTCCAAAAACCACCTCATGCAATATAAACATCTATAAATAAAGATAACAATAGAATATT  >  NC_000913/4542448‑4542929

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.