| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,630,385 | G→A | S46S (TCC→TCT) | ettA ← | energy‑dependent translational throttle protein EttA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,630,385 | 0 | G | A | 91.7% | 62.0 / ‑3.6 | 25 | S46S (TCC→TCT) | ettA | energy‑dependent translational throttle protein EttA |
| Reads supporting (aligned to +/- strand): ref base G (1/0); major base A (12/10); minor base T (1/1); total (14/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGACGGCCTTGTTCAGCGGCCAGCTTGTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCCTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCAGCCGGTCGATCACCCTCGCAGTAAAAGTAA > NC_000913/4630139‑4630630 | cagccGGCCTTGTTCAGCGGCCAGCTTGGCAAAATCGGCATCCGTATCGGCGTACAGCGCATACCCTTCATCCAGGCGTTTCAGGGCGTTAACCCCTTCAGAACCCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCCTGCGGCAGGTAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACCTTCGATGTCTTTATCAAGGCCCGCCATAATGCGCAGCAGGGTAGACt < 1:56877/247‑1 (MQ=255) ccTTGTTCAGCGGCCAGCTTGTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCAGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCCTGCGGCAGGTAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCcgc > 2:19305/1‑251 (MQ=255) cAGCGGCCAGCTTGTCAAAATCGGCACCCGGATCGGCGTACAGCGCATCCACTTCATCCAGGCGTTTCAGGGCGTTACCCACTTCAGAACCCGCTTCTTAAATGGACTCCCGCACGGTGTGTCCCGGTTTCAGCTGCGGTTCCTGCGGCAGGTAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCCCCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTc < 1:157241/251‑1 (MQ=255) gCCAGCTTGTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCAGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCCTGCGGCAGGTAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGAcc > 1:170305/1‑251 (MQ=255) aagcttttaaaaaTCGGAATCCGGATGGGGGTAAAGCGCATACACTTCATCAGGGCTTTTAAGGGCGTTAACCTCTTAAAAACCCGATTCTTAAATGGACTAACGAACGGTGGGTTCCGGGTTCAGCGGCGGTTCCGGCGGCAGTAAACCAATTTGGATGGCGGGCTGCGGACGCGCTCCACCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCa < 1:118493/242‑1 (MQ=255) aGCTTGTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCAGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCCTGCGGCAGGTAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGAccc > 1:151125/1‑249 (MQ=255) aGCTTGTAAAAATCGGCACCCGGACCGGCGTACAGCGAATACCCTTCACCCGGGGTTTTCGGGGCGTTACCCCCTTCAGAACCCGCTTCTTCAAGGGACTCCCGCAGGGTGTGTTCCGGGTTCAGCGGCGGTTCCTGCGGCAGGTACCCATTCTTGATGTCGGGCGGCGGACGCGCTTCCCCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCAg < 2:70498/251‑1 (MQ=255) aaaaaaTCGGCTCCCGGATCGGCGTACAGCGCATACCCTTCACCCAGGCTTTTCAGGGCGTTACCCCCTTAAGAACCCTCTTCTTCAATGGACCCCCGCAGGGTGTGTCCCGGGTTCGGCGGCGGTTCCTGCGGCAGGAAACCAATCTGGATGTCGGGCGGCGGACGCGCTTCCCTTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCAGGACAcc < 1:26288/249‑1 (MQ=255) aTCGGCGTACAGCGCATACACTTCATCAAGGCGTTTCAGGGAGTTAACCACTTCAGAAACCCCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCCTGCGGCAGGTAACCAATCTTGATGTCTGGCTGCGGGAGCGCTTCCCCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTTGACTTACCCGCGCCGTTCAGACCCAGGACACCCATTTTTGCCCCAggg > 2:181360/1‑250 (MQ=255) gTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCAGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCCTGCGGCAGGTAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAAc > 1:82361/1‑251 (MQ=255) ccTTCATCCAGGCGTTCCAGGGCGTTAACCACTTCAGAAACCGCTTCTTCAATTGCCTCACGCACGGTGTGTCCCGGGTTCAGCGGCGTTTCCGGCGGCAGGTAACCAATCTTGTTGTCTGCCTGCGGACGCCTTTCACCTCCGATGTCTTTACAAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGtt < 1:51042/250‑1 (MQ=255) aTCCAGGCGTTTCAGGGCGTTAACCACTTCAAAACCCCCTTCTTCAAGGGACTCCCGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCCTGCGGCAGGTAACCAACCTTGATGTCTGGCTGCGGACGCTCTTCCCCTCCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCa < 1:181360/251‑1 (MQ=255) aCTCACGCACGGGGTGTTCCGGGTTCAGCTGCGGTTCCTGCGGCAGGTAACCAATCGTGATGTCTGGCTGCGGACGCGCTTCACCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGACGATCAGACCCAGGACACCAATTTTTGACCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACCACTTTGCCGACACGATGCATGGtata > 2:72333/1‑250 (MQ=255) ggTGTGTTCCGGGTTCAGCTGCGGTTCCTGCGGCAGGTAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACCTTCGATGTCTTTATCAATGCCCGCCATAATGGGCAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAAATCAGAGAGATGTTTTTCAAAATATGACGTTTAGGCGGAACAACTTTTCCGACACGATGCATGGTATAAACGaaatc > 1:232917/1‑246 (MQ=255) ggTTCAGCTGCGGTTCCTGCGGCAGGTAACCAATCTTGATGTCTGGCTGCGGCCGCGCTTCACCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCCGAGAGATGGTTTTCAAAATATGACGTTTCGGCGGAAAAACTTTGCCGCCACGATGCCTGGTATAAAAGACTTGAGCCACggttga > 2:217107/1‑245 (MQ=255) ggTTCAGCTGCGGTTCCTGCGGCAGGTAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGCTGCATGGTATAAACGAATTGAGCCAc > 1:269243/1‑244 (MQ=255) tGCGGTTCCTGCGGCAGGTAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCctc > 1:73619/1‑251 (MQ=255) ggTTCCTGGGGCGGTTACCCAATCTTGTTGTCTGGCTGCGGACGCGTTTCACCTTCGATGTTTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTAt < 1:49412/251‑1 (MQ=255) aaTCTTGATGTCTGGCTGCGGACGCGCTTCACCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATGATGAGtt > 2:235056/1‑251 (MQ=255) tCTTGATGTCTGGCTGCGGACGCGCTTCAACTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGtttt > 1:92165/1‑251 (MQ=255) aCGCGCTTCACCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCAGGAAACCAATTTTTGCCCCAGGGACGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCAAGTTGGACTTCGCCTCTATGTTTATCGTGATGATGAGTTTTCAAAGGCGAAGTGTAGCCt > 1:267198/1‑251 (MQ=255) gttgtttttACCAAGGCCCGCCATAATGCGCAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATGATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAAt < 1:231348/245‑1 (MQ=255) cccGCCATAATGCGCAGAAGGGTTGACTGACCCGCGCCGTTCAGACACAGGACACCAATTTTTGCCCCAGGGAAGAAACTTAGATAGATGTTTTTCAAAATTTGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTAGAAACGAATTGAGCCACGTTGGACTTCGCCTTTATGTTTATCGGGATTAGGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCATTTGGTCGATCa < 2:245877/251‑1 (MQ=255) gcgcAGCAGGGTAGACTTACCCGCGCCGTTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATGATGAGTTTTCAAAGGCTAAGTGTAGCCTTTTTCCCCGCCTAATCCCAGTTGGTCGATCACCTTCGCagt < 1:171732/250‑1 (MQ=255) agGGTAGACTTACCCGCGCCGTTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATGATGAGTTTTCAAAGGCGCAGTGTAGCCTTTT‑CCCCGCCTAATCCCAGTTGGTCGTTCACCTTCGCagtaaaagtaa > 1:32281/1‑250 (MQ=255) | CAGACGGCCTTGTTCAGCGGCCAGCTTGTCAAAATCGGCATCCGGATCGGCGTACAGCGCATACACTTCATCCAGGCGTTTCAGGGCGTTAACCACTTCTGAAACCGCTTCTTCAATGGACTCACGCACGGTGTGTTCCGGGTTCAGCTGCGGTTCCTGCGGCAGATAACCAATCTTGATGTCTGGCTGCGGACGCGCTTCACCTTCGATGTCTTTATCAATGCCCGCCATAATGCGCAGCAGGGTGGACTTACCCGCGCCATTCAGACCCAGGACACCAATTTTTGCCCCAGGGAAGAAACTCAGAGAGATGTTTTTCAAAATATGACGTTTCGGCGGAACAACTTTGCCGACACGATGCATGGTATAAACGAATTGAGCCACGTTGGACTTCGCCTCTATGTTTATCGTGATAATGAGTTTTCAAAGGCGAAGTGTAGCCTTTTTCCCCGCCTAATCCCAGCCGGTCGATCACCCTCGCAGTAAAAGTAA > NC_000913/4630139‑4630630 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |