Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 4,288,385 | G→A | V208I (GTT→ATT) | nrfA → | cytochrome c552 nitrite reductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,288,385 | 0 | G | A | 97.1% | 107.8 / NA | 35 | V208I (GTT→ATT) | nrfA | cytochrome c552 nitrite reductase |
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (16/18); minor base C (1/0); total (17/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.86e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCGTCAACAACTTAGG‑TTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAA > NC_000913/4288147‑4288630 | ggattgggcgcgcatgaccaaGAAAGCCGGGGAAGATGGCTCCTTCAACGGTAAAGGGGCGCGCGGGGGTCCGAAAACCGTCAACACCTTAGG‑TGGGGCGGTTTCCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTGCCCGTCCGTAGGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGt < 1:47431/231‑1 (MQ=255) gtgGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCGTCAACAACTTAGG‑TTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGcc > 2:215429/1‑250 (MQ=255) gggggcggcTGATCCAGAAAGACGGGTATGTTGCCTATTCCCAGGGTAAATGGCCGGGCGGGTGTCCGAAAAGCGCTAACAACGTGGG‑TTGTTCCTATTGCTAGAACCCCGCCTCTCCAGAGTTCGCCAAATGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGAGGGAAGCCATTGGTAATCCTTTTGAGAAAGCCGGGCGGTTCGACCAGCAATCGATGATGTGCGGTCAGTGCCAt < 1:244824/243‑1 (MQ=255) gcGGCGAAGTTGTCTACTCCCACGGTAAAGGGGCGCGCGGCGGTCCGAAAAGCGTAAACATCTTGGG‑TTGGGCGGATGGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGc < 2:168491/250‑1 (MQ=255) ggCGACGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCGTCAACAACTTAGG‑TTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGt > 2:119394/1‑219 (MQ=255) ggCGAAGAGGGCTCCTCCCGCGGAAAATGGGCGCGGGGCGGTCCGGAAATCGTCAACAACTTAGG‑TGGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGt < 1:119394/219‑1 (MQ=255) gcgaagaggccatctgccACGGTAAATGGCCGCGCGGCGGTCCGGAAACCG‑GAACAAATTAGGGTTGTGCAGATTGCCGAAGCACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCGCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCaaa < 1:164256/235‑1 (MQ=255) gCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCGTCAACAACTTAGG‑TTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCaa > 1:268067/1‑250 (MQ=255) gaagtgtgCTACTTCCCCGGTAAAGGGGCGCGCGGCGGTCCGGAATTCGCCAACAACTGAGG‑TTGGGCCGTTTGCCATCACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCaaaaa < 2:198094/244‑1 (MQ=255) aaaatgtctattcccacgttaatggggCGCGGGGCGGTCAGAAAATCGTAAACATCTTAGG‑TTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTTCTTCGACGGCAAAAAc < 1:102613/227‑1 (MQ=255) aaGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCGTCAACAACTTAGG‑TTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAAc > 1:216471/1‑251 (MQ=255) ggCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCGTCAACAACTTAGG‑TTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGc > 1:73393/1‑251 (MQ=255) aCTTCCACGGCAAATGGGCGCGCCGCGGTCCGGAACTCGTCAAACACTAAGG‑TTGTGCCGCTTGCCCTAAACCCGACTCTCCAGAGTTCGCCAAAGCCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGCCTCGAGCGATGGAAGCCATTGGTAAAACTTTTGCGAAAGCCGGCCGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATAACTTCGACGGCacaaacaacgaggtt > 2:172465/1‑244 (MQ=255) ccACGGTAAATGGGCGCGCGGCGGTCCGGAAATCGTCAACAACTTACG‑TTGTGCCGATTGCCATAACACCCCCTCTCCAGAGCTCGCCAAAGGCAAACCGGAGTTAACCCTCTCCCGTCCGTACGCGGCTCGCGCGATGGAAGCCATTGGTAAACATTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAAt > 1:108609/1‑251 (MQ=255) ggcggcgGTCCGGAAATCTTCAACACTTTAGG‑TTGTGCCGTTTGCAATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACgg < 1:182555/250‑1 (MQ=255) cGGAAATCGTCAACAACTTAGG‑TTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGCTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACCAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTc > 1:265677/1‑251 (MQ=255) ggAAATCATCAACAACTGAGG‑GTGAGCCGAGTGCTATAACACCGCCTCTCCAGAGCTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCg < 1:89645/251‑1 (MQ=255) gAAATCGTCAACCACTAAGG‑TTGTGCAGGTTGCCATAACACCGCATCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCAATGATTGGCGGTCAGTGCCATGGGGAGTATTACTTCGACGGCAAAAACACAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCg > 2:52722/1‑250 (MQ=255) acaacTTAGG‑TTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATgg > 2:69356/1‑249 (MQ=255) caacTTAGG‑TTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGc > 1:126270/1‑251 (MQ=255) g‑TTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTAc > 2:7082/1‑251 (MQ=255) g‑TTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTAc > 1:124480/1‑251 (MQ=255) ccaaaaaCACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCAGTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGcc < 1:109648/246‑1 (MQ=255) acCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAATCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGATAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATCGCGCAGTATTACGACAAAATTGCCTTCTCTg > 2:209911/1‑250 (MQ=255) ctcCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACt > 1:248522/1‑251 (MQ=255) cGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAATCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTGCTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAAGTGCCTTCTCTGACTGTACTAACTCCCTGt < 1:185276/251‑1 (MQ=255) ggCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAAc < 1:242541/251‑1 (MQ=255) ccGGAGTTAACCCTTTCCCTTACGTATGCGGCTCGCGCGATGGAAGCCATTGTTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACAGCAAAAACAAAGCGTTTAAATTCCCTTGGGATGGCGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTTCCTTCGCTGACTGGACTACCGCCCTGTCTAAAACGCCAAt < 2:114985/251‑1 (MQ=255) ccGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAAt < 1:203377/251‑1 (MQ=255) ccTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAgcgc > 1:256614/1‑251 (MQ=255) cgcgATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGa < 1:55553/251‑1 (MQ=255) tttGAGAAAGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAACGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGCCAGCGGGCATTCACGGTAAAaaca > 2:91955/1‑250 (MQ=255) aaGCCGGACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGGCATTCACGGTAAAAACAACGTGAcc < 1:215429/251‑1 (MQ=255) gACGTTTCGACCAGCAATCGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATc < 2:126270/251‑1 (MQ=255) cGATGATTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGGGATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCaaaa < 1:232056/251‑1 (MQ=255) | GGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCGTCAACAACTTAGG‑TTGTGCCGATTGCCATAACACCGCCTCTCCAGAGTTCGCCAAAGGCAAACCGGAGTTAACCCTTTCCCGTCCGTATGCGGCTCGCGCGATGGAAGCCATTGGTAAACCTTTTGAGAAAGCCGGACGTTTCGACCAGCAATCGATGGTTTGCGGTCAGTGCCATGTGGAGTATTACTTCGACGGCAAAAACAAAGCGGTTAAATTCCCGTGGGATGACGGCATGAAAGTCGAAAATATGGAGCAGTATTACGACAAAATTGCCTTCTCTGACTGGACTAACTCCCTGTCGAAAACGCCAATGCTGAAAGCGCAGCACCCGGAATATGAAACCTGGACAGCGGGCATTCACGGTAAAAACAACGTGACCTGTATCGACTGCCATATGCCAAAA > NC_000913/4288147‑4288630 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |