| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,161,403 | G→A | A50V (GCC→GTC) | fhuE ← | ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,161,403 | 0 | G | A | 92.9% | 33.7 / NA | 14 | A50V (GCC→GTC) | fhuE | ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (6/7); minor base C (1/0); total (7/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATAGTTATCGATCTGGAATCCGCGGGAATAATAAAGAGCACGATCGGAATCCGCCTGACTTTTGCTGATCCCCAGCGTGTTTTCCATCACTTCGCCCAGCGTTTGTAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGGCTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTGACGGTTTGGTGATGGCTTGATATTGATTATCCCTGTTAAATTGTGTTGAAAGCATTTGAAATCTCTTGGTTTATGTTGTCGTCAGGCTCATGCCGGAGGAGGGTGATGAGCGATTATATTTAGTGTGCGAATAATTTTGTTTGTAA > NC_000913/1161162‑1161642 | ataGTTATCGAGCGGGAATCCGCGGGAATAATAAAGAGCACGATCGGAATCCGCCTGACTTTTGCTGATCCCCAGCGTGTTTTCCATCGCTTCGCCCAGCGTTTGTAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGACTGAACCCt < 2:55333/251‑1 (MQ=255) gAATCCGCCTGACTTTTGCTGATCCCCAGCGTGTTTTCCATCACTTCGCCCAGCGTTTGTAACTGATGATCTTCCATCCGCTGCTGGCTCACAATAGTGAACGACTGAGGAATATCACGTTGAGCCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGCGCTGTGCCTGCACCCTCAACAATCACCGTTTCTTCAGTGGCTGGGGCCGCCAAAGCGGc > 1:266671/1‑248 (MQ=255) ttttGCTGATCCCAAGCGTGTTTTCCATCACTTCGCCCAGCGTTTGTAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGACTGAACCCTCAACAATCACCGTTTCTTCCGTGGCTGGTGGAGCAAAAGCGGCAGAAGGTaaatgtgcc > 2:57968/1‑244 (MQ=255) gtgtTTTCCATCACTTCGCCCAGCGTTTGTAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGACTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCa > 1:180816/1‑219 (MQ=255) gtgtTTTCCATCACTTCGCCCAGCGTTTGTAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGACTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCa < 2:180816/219‑1 (MQ=255) cGTTTGTAACTGCTGATCTTCCAGCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGACTGAACCCTCAACAATCTCCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTGACGGTTTGGTGATgg < 1:183001/251‑1 (MQ=255) gctgGCTTACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGACTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCTGCAAGTATTGACGGTTTGGTGATGGCTTGATATTGATTATCCCTGTTAAAtt < 1:127296/249‑1 (MQ=255) gAGTCATCTTCCGTTTGGTACCAGCATAGGTAGACTTTACGCTGTAATCATTTTCTCTATCATCTGGAGCTGTGACTGAACCCTCAACAATCATCGTTTCTGCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGCGCCAGTGCTATGCAACCGGTAAGTAGTGACTGTGTGGTTATGGCTTGATATTGATTATTCCTGTTAAATTGTGTTGAAAGAATTTGAAATCTCTTGGTTTATGTTgtcgtc < 1:260004/251‑1 (MQ=255) tttGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGACTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCCAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTGACGGTTTGGAGATGGATTGATATTGAATATCCCTGTTAAATTGTGTTGAAAGCAGTTGAAATCTCTTGGTTTATGTTGTCGTCAGGCTAAAGCCgg > 1:118660/1‑251 (MQ=255) tACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGACTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTGACGGTTTGGTGATGGCTTGGTATTGATTATCCCTGTTAAATTGTGTTGAAAGCATTTTAAATCTCTTGGTTTATGTTGTCGTCAGGATCATGCCggagg > 2:181781/1‑249 (MQ=255) ggTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGACTGAACCCTCAACAATCGCCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTGACGGTTTGGTGATGGCTTGATATTGATTATCCCTGTTAAATTGTGTTGAAAGCATTTGAAATCTCTTGGTTTATGTTGTCGTCAGGCTCATGCCGGAGGAGGGTGATGAGc < 1:35756/251‑1 (MQ=255) tGTAATCATTTTCGCCATCATCTGGAGCTGTGACTGAACCCTCAACACCCACCGTTTCTTCAGTGCCTGGTGCAGCAAACGCGCCAGCAGGTAATAGTGCCAGTGCTATGCAACCGGAAAGTAGTCACGGTTTGGTGCTAGCTTGATATTGATTATCCCTGTTAAATTGTGTTGAAAGCATTTGAAATCTCTTGGTTTATGTTTTCGTCCGGCTCATGCCGGAGGAGGGTGATGAGCGATTATATTTAgtg > 1:132883/1‑251 (MQ=255) aTTTTCGCCAGCATCTGGAGCTGTGACTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTGACGGTTTGGTGATGGCTTGATATTGATTATCCCTGTGAAATTGTGTTGAAAGCAGTTGAAATCTCTTGGTTTATTTTGTCGTCAGGCTCATTCCGGAGGATGGTGATGAGCGATGATAGTTAGTGTGCGaat < 2:266671/251‑1 (MQ=255) tGGAGCTGTGACTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTGACGGTTTGGTGATGGCTTGATATTGATTATCCCTGTTAAATTGTGTTGAAAGCATTTGAAATCTCTTGGTTTATGTTGTCGTCAGGCTCATGCCGGAGGAGGGTGATGAGCGATTATATTTAGTGTGCGAATAATTTTGTTTGTaa > 1:203553/1‑250 (MQ=255) | ATAGTTATCGATCTGGAATCCGCGGGAATAATAAAGAGCACGATCGGAATCCGCCTGACTTTTGCTGATCCCCAGCGTGTTTTCCATCACTTCGCCCAGCGTTTGTAACTGCTGATCTTCCATCCGCTGCTGGCTAACAATAGTGACCGACTGAGGAATATCACGTTGAGTCATCTGCATTTTGGTACCCGCAGAGGTAGACGTTACGCTGTAATCATTTTCGCCATCATCTGGAGCTGTGGCTGAACCCTCAACAATCACCGTTTCTTCAGTGGCTGGTGCAGCAAAAGCGGCAGAAGGTAATAGTGCCAGTGCTATGCAACCGGCAAGTAGTGACGGTTTGGTGATGGCTTGATATTGATTATCCCTGTTAAATTGTGTTGAAAGCATTTGAAATCTCTTGGTTTATGTTGTCGTCAGGCTCATGCCGGAGGAGGGTGATGAGCGATTATATTTAGTGTGCGAATAATTTTGTTTGTAA > NC_000913/1161162‑1161642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |