Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 154,182 C→T L415L (CTG→CTA htrE ← putative fimbrial usher protein HtrE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913154,1820CT100.0% 58.2 / NA 21L415L (CTG→CTAhtrEputative fimbrial usher protein HtrE
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (10/11);  total (10/11)

CGCATGGATTTCGGTTCAAGATCTTGTTCGGGATGTTTCACTTCATCAATTAGAGTTAGTGCATCATTAAGACCAAGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTCAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCAT  >  NC_000913/153937‑154414
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                        
cgcttagATTTCGGTTGAAGATCTTGATCTAGATGGTTCACTTCATCAATTCGAGTTAGTGCATCATTAAGACCAAGGTACTTCTGTGTCGAAAAGCGATAGGCCGGGATATTCAGTGAATTTCTTGTTTCTTAGAATAACTTGTTCCGGGAAACACGATAACTTTGCCCATGGTATGTTTTATCATCCGGGATACGAACATTGGCATGAGTCACATCGATAAATAATGCACCAACTGAAGTATTTAGAcc                                                                                                                                                                                                                                     >  2:188895/7‑251 (MQ=255)
         ttCGGTTCAAGATCTTGTTCGGGATGTTTCACTTCATCAATTAGAGTTAGTGCATCATTAAGACCAAGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTa                                                                                                                                                                                                                             >  1:108026/1‑250 (MQ=255)
             gTTCAAGATCTTGTTCGGGATGTTTCACTTCATCAATTAGAGTTAGTGCATCATTAAGACCAAGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACaaa                                                                                                                                                                                                                        <  2:86053/251‑1 (MQ=255)
              ttCAAGATCTTGTTCGGGATGTTTCACTTCATCAATTAGAGTTAGTGCATCATTAAGACCACGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAAc                                                                                                                                                                                                                       >  2:250228/1‑251 (MQ=255)
                  aGATCTTGTTCGGGATGTTACACTTCATAAATTAGAGTTAGTGCATCATTAAGACCAAGGTAATACTGTGTCGCATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTTTTCCAGGAAACACGATAACTTTGCCCATGGTATGTTTTATCATACGTGATACGAACATTAGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAACCCAGc                                                                                                                                                                                                                   >  1:38130/1‑251 (MQ=255)
                               gATGTTTCACTTCATCAATTAGAGTTAGTGCATCATTAAGACCAAGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGttatta                                                                                                                                                                                                      <  1:84231/251‑1 (MQ=255)
                                          tcatcaATTAGAGTTAGTGCATCATTAAGACCAAGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCt                                                                                                                                                                                            <  1:160174/250‑1 (MQ=255)
                                                                          aaGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCa                                                                                                                                                           <  1:204593/251‑1 (MQ=255)
                                                                                                  aTAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGaa                                                                                                                                   <  1:216713/251‑1 (MQ=255)
                                                                                                                     gAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCTCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAATACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATGCCGGTATAACCCGTCAGATAGTTATTCAGGCGGTAGTAGTAGCGTGCTTGAAATAAATTAGGCGCATCCTg                                                                                                                <  2:111802/251‑1 (MQ=255)
                                                                                                                                  cttcGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCtttt                                                                                                   >  2:183058/1‑251 (MQ=255)
                                                                                                                                    tcGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCttt                                                                                                    <  1:3402/248‑1 (MQ=255)
                                                                                                                                                                    ttGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGCGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACAGCCGCTAATATCCCAACGTCCa                                                                  >  2:243609/1‑250 (MQ=255)
                                                                                                                                                                            ggTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAAGGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCACCCTGAATATCATCTTTTAAGCCCTGACCGCCGCTAATATCCCAACGTCCAACGCCAgg                                                          <  1:250228/250‑1 (MQ=255)
                                                                                                                                                                                           ccGGGATACGAACATGGAAATGATTACAATCAAAAAAAAATGCACCAACTGAAGAATTTAGCCCAAGCCCTAACAAACCAGTGGTATATTTATTATCGTTTATCTGATTACTGATATACCCCGTCAAATAGTTTTTCAGGCCGTAGTAGTATCTGTTTTAAAAAAAATGGGGCTAACCCTAATTACCATCGTTAAGGCCCGGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGaaca                                          <  2:235919/251‑1 (MQ=255)
                                                                                                                                                                                                aTACGAACATTGGAATGAGTCACATCGTAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACgg                                      >  1:202478/1‑250 (MQ=255)
                                                                                                                                                                                                    gAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCCTCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATg                                   >  1:123507/1‑249 (MQ=255)
                                                                                                                                                                                                       cATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGaa                               >  1:30221/1‑250 (MQ=255)
                                                                                                                                                                                                        aTTGGAATGAGTCACATCGAAAGAAAAGGCACCAACTGAAGTATTTAGACCAAGACCAAACAAACCAGCGGTATATTTATTATCGGTTATCTGAATACCGGAATAACCCGTCAGATAGTTATTCAGGCCGTAGGATTAGCTTGCTTGAAATAAATTATGCTCATCCTGAATATCATCTTTTAAGCCCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAg                             <  1:183058/251‑1 (MQ=255)
                                                                                                                                                                                                                           aaaagaaaATGCCCCAACTGATGTTTTTAGACCAAGACCTAACAAACCAGGGGTAAATTTATTATCGGTTATTGGAATCCCGTTATAACCCGTCAGATATTTATTCAGGCCGGATTAGTAGCTTGCTTAAAATAAATTAGCCTCTTCCTGAATATCAGTTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCt           <  2:108026/250‑1 (MQ=255)
                                                                                                                                                                                                                                    tGCACCAACTGAAGTATTTAGACCAAGACCTAACAAACCAGCGGCCTAGTTATAATCGGATATCTGAATACCGGTATAACCAGTCAGATAGCTCTTCAGACCGTAGTCGAAGATTGCTTGATATAAATTAGGATCATCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCACCGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGCAAGGTTGCGAGAATGTCCGCTTTGAGCCAt  >  1:18982/1‑251 (MQ=255)
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                        
CGCATGGATTTCGGTTCAAGATCTTGTTCGGGATGTTTCACTTCATCAATTAGAGTTAGTGCATCATTAAGACCAAGGTAATTCTGTGTCGAATAGCGATAGGCCGCGATATTCAGTGAAGTACTTGTTTCTTCGAATAACTTGTTCCAGGAAACACGATAACTTTGCCCCTGGTATGTTTTATCATCCGGGATACGAACATTGGAATGAGTCACATCGAAAGAAAATGCACCAACTGAAGTATTCAGACCAAGACCTAACAAACCAGCGGTATAGTTATTATCGGTTATCTGAATACCGGTATAACCCGTCAGATAGTTATTCAGGCCGTAGTAGTAGCTTGCTTGAAATAAATTAGGCTCATCCTGAATATCATCTTTTAAGACCTGACCGCCGCTAATATCCCAACGTCCAACGCCAGGGCGTAACATTTGAACAACGGATGAGAAAGGTTGCGAGAATGTCCGCTTTGAGCCAT  >  NC_000913/153937‑154414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: