New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1979270	NA (NA)	35 (1.330)	34/490	0.1	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	= 4569764	0 (0.000)					intergenic (‑1037/+398)	ytiE/yjiR	protein YtiE/fused putative DNA‑binding transcriptional regulator/putative aminotransferase YjiR

AGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTGGTAGTATTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATATATAAAAGGGGAGCAGCGCATTCTTCGATTGTTGTTGCAGAATGGGGCGGATCCTGAATGGATACAAAAGATTACCGGACTTTCGGCAGAGCAAATGCAGGCATTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAA  >  NC_000913/4569516‑4570002                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                               agTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTGGTAGTATTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAgg                                                                                                                                                                                                                                              >  1:82259‑M2/1‑249 (MQ=255)        cTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTGGTAGTATTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgct                                                                                                                                                                                                                                       <  1:4519‑M2/251‑10 (MQ=255)             ggAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGCGCTTATCGATCAACTGGTAGTATTACTGCTTACAGCGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGCGCGAATCATGACGATTGCAGCGAGAATTCATAATGATGGCTAggtgatgctgcca                                                                                                                                                                                                                                   <  1:108033‑M2/250‑14 (MQ=255)               aGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTGGTAGTATTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaact                                                                                                                                                                                                                                >  2:57579‑M2/1‑235 (MQ=255)                                  tCGCCAGCGAGATCTGATGGGGCTTATCGATCAACTGGTAGTATGTCTTGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTGTATCAGTGAACTTACCCGTCGAATACCACAACACAGGGAGCGAATAAGGACGATTGCTGAGGGAATTCATAATGATGGATAggttatgctgtcaactgactgacttagcgtatga                                                                                                                                                                                                              >  2:237243‑M2/1‑216 (MQ=255)                                                tGATGGGGCTTATCGATCCACTGGTAGTATTACTGGTTCCAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt                                                                                                                                                                                               <  2:190247‑M2/251‑50 (MQ=255)                                                 gATGGGGCTTATCGATCAACTGGTAGTATTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgttttt                                                                                                                                                                                                    >  2:96221‑M2/1‑201 (MQ=255)                                                          tATCGATCAACTGGTAGTATTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagt                                                                                                                                                                                       >  2:92960‑M2/1‑192 (MQ=255)                                                                  aaCTGGTAGTATTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGACTAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtt                                                                                                                                                                             <  2:68340‑M2/251‑68 (MQ=255)                                                                                  ggTTACAGGGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAAATACATTTTACTGGCTGGCAATGAAGCGCGTTTTAATGTGTTTATCAGTGAGCTTACCCGTCGAATGCCACAACACAGGGTGCTAATAATGACGATTTCAGATCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcatctgtccc                                                                                                                                                              >  1:236078‑M2/1‑168 (MQ=255)                                                                                   gTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc                                                                                                                                                            <  1:59362‑M2/251‑85 (MQ=255)                                                                                        agagTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggagatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt                                                                                                                                                       <  2:81616‑M2/251‑90 (MQ=255)                                                                                                cTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctact                                                                                                                                               <  1:180576‑M2/251‑98 (MQ=255)                                                                                                         gCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctagcagctgtccctcctgttcagctactgacggggtg                                                                                                                                      >  2:101465‑M2/1‑145 (MQ=255)                                                                                                            aGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtg                                                                                                                                   <  2:263032‑M2/251‑110 (MQ=255)                                                                                                                 aCTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcatctactgacggggtggtgcgtaa                                                                                                                              >  1:191728‑M2/1‑137 (MQ=255)                                                                                                                   tGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacg                                                                                                                            <  1:88731‑M2/251‑117 (MQ=255)                                                                                                                    gcgcTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacg                                                                                                                            >  1:197980‑M2/1‑134 (MQ=255)                                                                                                                     cgcTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccattggcttctgtttctatcagctgtccctcctgttctgctactgacggggtggtgcgtaacggc                                                                                                                          >  1:151697‑M2/1‑133 (MQ=255)                                                                                                                          ttAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTCTCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttaatgtatgatggtgtttttgaggtgctccagtggcttctgtttctatccgctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaa                                                                                                                       <  1:226155‑M2/249‑122 (MQ=255)                                                                                                                                                   aTGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctc                                                                                            >  1:114550‑M2/1‑103 (MQ=255)                                                                                                                                                            gTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcac                                                                                   <  1:145834‑M2/251‑158 (MQ=255)                                                                                                                                                                    gAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaa                                                                           >  2:88731‑M2/1‑86 (MQ=255)                                                                                                                                                                    gAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgta                                                                            <  1:235923‑M2/250‑165 (MQ=255)                                                                                                                                                                      gTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaa                                                                         >  1:33320‑M2/1‑84 (MQ=255)                                                                                                                                                                        ttATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaac                                                                        >  2:59362‑M2/1‑82 (MQ=255)                                                                                                                                                                                 aaCTTACCCGTCGAATGCCACAACTCAGGGCGCGAGTAATGACGATTGCAGAGCGAATTCATAATGATGGATAggggatgctgccaacttactaatttagtgaatgatggtgtatttgagatgctccagtggcttctgtttatatcagctgtcgctcctgttcagctactgacggggtggtgcgtaacggcaacagcaccgctggacctaagcgcgatctctgctctcaatgacgtaaaacatggcaaatg                                                              <  2:2588‑M2/251‑179 (MQ=255)                                                                                                                                                                                              aaTGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttac                                                  <  1:66683‑M2/250‑191 (MQ=255)                                                                                                                                                                                                       acacAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctc                                        >  1:69466‑M2/1‑51 (MQ=255)                                                                                                                                                                                                         acaGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctca                                       <  2:78992‑M2/250‑202 (MQ=255)                                                                                                                                                                                                                      aatGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctttttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacgtacaccgcttctcaacccggtacgcac                          >  2:91097‑M2/1‑36 (MQ=255)                                                                                                                                                                                                                      aatGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcac                          >  1:43153‑M2/1‑36 (MQ=255)                                                                                                                                                                                                                        tGACGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcacc                         <  2:156850‑M2/249‑216 (MQ=255)                                                                                                                                                                                                                        ggaCGATTGCAGAGCGAATTCATAATGATGGATAggtgatgctgccaacttactgatttagtgtatgatggggtttgtgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccag                       >  2:180576‑M2/2‑34 (MQ=255)                                                                                                                                                                                                                                              tAATGATGGATAggtgatgctgccaacttcctgatttagtgtacgatggcgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccatg  <  1:227503‑M2/250‑239 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                               AGTCGCCCTGTTGGAGTTGATCCAAAAGCATATTCGCCAGCGCGATCTGATGGGGCTTATCGATCAACTGGTAGTATTACTGGTTACAGAGTGTGCTAATGACAGCCAGATAACTGCGCTGTTAAATTACATTTTACTGACTGGCGATGAAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATATATAAAAGGGGAGCAGCGCATTCTTCGATTGTTGTTGCAGAATGGGGCGGATCCTGAATGGATACAAAAGATTACCGGACTTTCGGCAGAGCAAATGCAGGCATTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAA  >  NC_000913/4569516‑4570002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.