| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,131,341 | Δ128 bp | IS5‑mediated | yghQ ← | putative transport protein YghQ |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3130384–3131345 | 3131468 | 124–1085 | 2 [1] | [0] 29 | [insH9]–[yghQ] | [insH9],[yghQ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 29 (1.100) | 29/488 | 0.1 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3131469 = | 0 (0.000) | coding (940/1068 nt) | yghQ | putative transport protein YghQ | |||||
TAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAAC‑AGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT > NC_000913/2288694‑2289153 | tAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAACCAGCTGGATATTTTTTTTCAGGACAACACCATCAACTGTCTCACCATACTCCAC‑AGTTGATGCCAATGCTATGGGTGGATATCAGGAAGGGGCGAATAAGCGGGGAAAtt > 1:140153/1‑251 (MQ=255) gAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAATATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATATACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAAC‑AGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATtcttct < 2:212773/249‑1 (MQ=255) gAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGGTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGGCACATAAATCAGCTGGATAACTTTTTCCAGGACAACAACATCAACAGCCTCACCATACTCAACCAGT‑GATGCCAATGGTTTGGGGGACAATTAGGCAGGCGCGAATAAGCGGGGAAAATCTtctcc > 1:64384/1‑250 (MQ=255) cattcattTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGAGTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCATC‑AGTTGATTCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattt < 1:172746/251‑1 (MQ=255) cattTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTGACACCAAATTCTTTTATATGCTGGTCTCCGCCAGGATTGATGTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTGTTCCAGGACAACGCCATCAACTGGCTCACCATACTCAAC‑AGTTGATGCCAATGCTATGGGGGAATATAAGGAAGTTTCGAATAAGCGGGGAAATTCTTCCCGGCTGACTCAGtcatttcatt < 2:118344/251‑1 (MQ=255) ccTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCCGGACAACACCATCAACTGTCTCACCATACTCAAC‑AGTTGATGCCAATGCTATGGGGGAATATAAGGAAGGGGCGAATAAGCGGGGGAATTCTTCTCGGCTGACTCAGTCATTTTCTTTCTTCATGTTTGATCCggt > 2:148871/1‑249 (MQ=255) cAGTATTATTACTTACACCAGATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAAC‑AGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAACGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGGTTTTTTCTCCCGt > 1:51652/1‑250 (MQ=255) attaCTTACAACAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAAC‑AGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt < 1:35816/251‑1 (MQ=255) gtgctcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATACACCAGCTTGATATCTTTGACCAGGACAACCCCATCAACTGTCTCACCATGCGCAAC‑AGTTGATGCCAATTCTTTTGGTGAATACAACGAAGGTGTGAATAAGCTGGGAAAGTCTTCGCTGCTGACTCAGTCATTGCATTTCTTCATGGTTGAGCCGAGTTTTTCTCCCGTAAATGCCTTGACTCAGCCTTTGTAGTCCGTttctt < 2:107751/246‑1 (MQ=255) cGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAAC‑AGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCa < 2:51652/250‑1 (MQ=255) attGGCGGTCCCATAAACCAGCTGGAGATCTTTTTCCAGGACAATACCATCAACTGTCTCACCAGACGCAAC‑AGTTGATGCCAATGTTAGGTGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCTATTTTTGCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGACATTTAAGGCGTTATCTCCAGttgtt < 2:153782/250‑4 (MQ=18) aTAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAAC‑AGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGAtctctc > 1:81594/1‑251 (MQ=255) cAGCTGGATATCTTTTTCCAGGACAACGCCATCAACTGTCTCACCATACTCAAC‑AGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGGTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTg < 1:23843/251‑1 (MQ=255) acacCATCAACTGTCTCACCATACTCAAC‑AGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGAAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTCTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAAc < 1:43305/251‑1 (MQ=255) tcACCATACTCAAC‑AGTTGATGCCAATGCTCTGAGAGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCAATTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAAATCTCTCCCACTGACGTATCATTTGGTCCGCCAGAAACCGGTTGGCAAGCGTg > 1:228469/1‑251 (MQ=14) ccATAATCAAC‑AGTTGATGCCAATGCTATGGGTCAATATAAGGCAGGTGCGCATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAAt > 2:37002/1‑251 (MQ=255) aCTCAAC‑AGTTGATGCCAATGCTATGTGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGACATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAAc < 1:37002/250‑1 (MQ=255) cTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGtttt > 1:90037/1‑251 (MQ=35) | TAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAAC‑AGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT > NC_000913/2288694‑2289153 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |