| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,291,151 | IS5 (–) +4 bp | coding (910‑913/1014 nt) | rssB → | regulator of RpoS |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1291151 = | 0 (0.000) | 27 (1.020) | 25/490 | 0.2 | 100% | coding (910/1014 nt) | rssB | regulator of RpoS |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1291154 | 0 (0.000) | 13 (0.490) | 12/488 | 0.8 | 100% | coding (913/1014 nt) | rssB | regulator of RpoS |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
TGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTTGCCAGAGTTGGGCGCGTTATTGAAGCAGGTAAACCATTTACTTCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAAAAATCTCATTCTGGTTTCTGCGGGTCTGAATGCGACGTTAAATACCGGCGAACACCAGGTGCAAATCAGTAATGGTGTTCCGTTAGGCACTTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAATATGGGGAACCGGTGGTCGACTGCGCTTGATGTTGTCTGCAGAATGAGCAAACGATAACGCGGGCTAAATTTGCATTACCTGCTAATGTCGGCTGGTGGTACTATCGTCGCCATTCGTATAAGTAATTGTCTTAATTATGCTAACTCGCCTCCTTTTCAGAACTTAGCCCCTTCGGGGTGCTGATATAC > NC_000913/1290906‑1291397 | tGTTTAACGGATTATTACAGGAACAGATTGAACACCAAAATCAACGGTTACCAGAGTTGGGCGCGTTATTGAAACAGGTAAACCATTTACTTCGTCAGGCCAATCTGCCGGGGCAGTTTCAGCTATTAGTTGGCTATTATCATCGCGAACTGACAAATCTCTTTCTGAGTTCTGCGGGTCTGTATGCGACGTTAAATACTGGCGAACACCAGGTGCACAACAGTAATGGTGTTCCATTAGGCACtttcggg > 1:118790/1‑247 (MQ=255) agcggataagttcgccggccattaccagccttggtgtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcgctgtcggcgaaggtaaggtgatgactcaggatgaaccctgttctatggctccagatgacaaacattatctcatatcagggacttgttcgcaccttccTTAGGTAACGCtt > 1:129490‑M1/239‑251 (MQ=255) ggATTATTACAGGCACAGCTTGCACACCAAAATCAACGGTTCCCAGAGTTGGGCGCGTTATTGAAGCAGGTAAACCATTTACTTCGTCAGGCCAATCTGCCGGGGAAGTTTACGCTATTAGGTGGCTATTATCATCGCGAACTGAAACATCTCATTCTGGTTTCTGCGGGTCTGAATGCGACGTTAAATACCGGCGAACACCAGGGGCAAATCAGTAATGGTGTTCCGTTAGTCACTTTAGggacggat > 1:84630‑M1/1‑241 (MQ=255) gataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTAttt < 2:168310‑M1/17‑1 (MQ=255) taaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatatcttttctggtctgacggcgcttactgctgaattcactggcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTg < 1:152164‑M1/18‑1 (MQ=255) aaggtcgccggccattaccagccttggtgtaaaacggctcgatgacttccgccatgtgttgccatgtcagaatctgctccatgcgggacaagaaaatctctgttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggcttcagatgacaaacatgatctcatatcaggtacttgttcgctccttccTTAGGTAACGCTTATTTGaa > 1:164310‑M1/232‑251 (MQ=255) attaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCACTTGAGcc < 1:121939‑M1/31‑1 (MQ=255) cacCAAAATCAACGGTTGCCAGAGTTGGGCGCGTTATTGAAGCAGGTAAACAATTTACTTCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAAAAATCTCATTCTGGTTTCTGCGGGTCTGAATGCGACGTTAAATACCGGCGAACACCAGGTGCAAATCAGTAATGGTGTTCCGTTAGGCACTTTAGggaaggtgcgaataagcggggaaattcttctcgg > 1:265358‑M1/1‑217 (MQ=255) gggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCt > 1:119265‑M1/206‑251 (MQ=255) cctattgcgtccgccatgttttgccatggctgaatctgctccatgcgggacaagaaaatctctttgctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagtttatgactcatgatgaaccctgttctatggctccagatgacaaacaagatctcatatcagggacttgttcgcaccttccATAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCaaa > 2:197234‑M1/194‑251 (MQ=255) cgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAat > 1:168310‑M1/193‑251 (MQ=255) atgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAatat > 2:41533‑M1/191‑251 (MQ=255) gttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAATATGGGGAACCggtggt > 1:120475‑M1/177‑251 (MQ=255) catggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAATATGGGGAACCGGTGGTCGACTgc < 1:99671‑M1/82‑1 (MQ=255) cGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAAAAATCTCATTCTGGTTTCTGCGGGTCTGAATGCGACGTTAAATACCGGCGAACACCAGGTGCAAATCAGTAATGGTGTTCCGTTAGGCACTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttg > 1:35200‑M1/1‑157 (MQ=255) cagtccaatcTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTAGCATCGCTAACTTAAAAATCTCAATCTGGTTTCTGCGGGTCTGAATGCGACGTTAAATACCGGCGAACACCAGGTGCAAATCAGTAATGGTGTTCCGTTAGGCACTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagtcgattttttctcccgtaaatgccttgagt < 2:96378‑M1/247‑98 (MQ=255) gCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAAAAATCTCATTCTGGTTTCTGCGGGTCTGAATGCGACGTTAAATACCGGCGAACACCAGGTGCAAATCAGTAATGGTGTTCCGTTAGGCACTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatc > 2:42372‑M1/1‑151 (MQ=255) gacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAATATGGGGAACCGGTGGTCGACTGCGCTTGATGTTGTCTGCAGAATg < 1:55545‑M1/104‑1 (MQ=255) acaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGAGGCCTGGCAATGCCAAATATGGGGAACCGGTGGTCGACTGCGCTTGATGTTGTCTGCAGAATGAGc > 2:121939‑M1/145‑251 (MQ=255) aaTCTGCCGGGGCAGTTTCCGCTATTAGTTAGCTATTATCATCGCGAACTGAAAAATCTCATTCTGGTTTCTGCGGGTCTGAATGCGACGTTAAATACCGGCGAACACCAGGTGCAAATCAGTAATGGTGGTCCGTTAGGCACTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttattcatgtttgagccgattttttctaccgtatatgccttgaatcagaat > 1:220780‑M1/1‑148 (MQ=255) agaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAATATGGGGAACCGGTGGTCGACTGCGCTTGATGTTGTCTGCAGAATGAGCaaa > 1:132389‑M1/142‑251 (MQ=255) gaaaatctcttttctggtatgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgctgaaccctgttctatggctccagatgaaaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAATATGGGGAACCGGTGGTCTACTGAGCTTGATGTTGTCTGCAGAATGAGCAAAc < 1:206446‑M1/111‑1 (MQ=255) gggCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAAAAATCTCATTCTGGTTTCTGCGGGTCTGAATGCGACGTTAAATACCGGCGAACACCAGGTGCAAATCAGTAATGGTGTTCCGTTAGGCACTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagacc < 1:76905‑M1/251‑113 (MQ=255) gCTATTATCATCGCGAACTGAAAAATCTCATTCTGGTTTCTGCGGGTCTGTATGCGACGTTAAATACAGGCGAACACCAGGTGCAAATCAGTAATGGTGTTCCGTTAGGCACTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgt > 2:37144‑M1/1‑117 (MQ=255) ttcactgtcagcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAATATGGGGAACCGGTGGTCGACTGCGCTTGATGTTGTCTGCAGAATGAGCAAACGATAACGCGGGCTAAATTTGCATTACCTGCTAATGTCgg < 1:94689‑M1/150‑1 (MQ=255) tgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagtgacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTgg > 1:249547‑M1/97‑144 (MQ=255) aaaaaTCTCATTCTGGTTTCTGCGGGTCTGAATGCGACGTTAAATACCGGCGAACACCAGGTGCAAAGCAGTAATGGTGTTCCGTTAGGCACTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaagcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgag < 2:133669‑M1/251‑155 (MQ=255) gcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAATATGGGGAACCGGTGGTCGACTGCGCTTGATGTTGTCTGCAGAATGAGCAAACGATAACGCGGGCTAAATTTGCATTACCTGCTAATGTCGGCTGGTGGTAc < 1:189886‑M1/160‑1 (MQ=255) aaggtgatgactcatgatgaaccctgttctatggctccatatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTTGCAATGCCAAATATGGGGAACCGGTGGTCGACTGCGCTTTATGTTTTCTGCAGAATGAGCAAACGATAACTCGTTCTAAATTTGCATTACCTGCTAATGTCGGCTGGTGGTACTAtcgtc > 1:255791‑M1/84‑250 (MQ=255) atgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAATATGGGGAACCGGTGGTCGACTGCGCTTGATGTTGTCTGCAGAATGAGCAAACGATAACGCGGGCTAAATTTGCATTACCTGCTAATGTCGGCTGGTGGTACTATCGTCGCCATTc < 1:243733‑M1/174‑1 (MQ=255) catgataaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAATATGGGGAACCGGTGGTCGACTGCGCTTGATGTTGTCTGCAGAATGAGCAAACGATAACGCGGGCTAAATTTGCATTACCTGCTAATGTCGGCTGGTGGTACTATCGTCGCCATTCGtata < 2:164773‑M1/179‑1 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAATATGGGGAACCGGTGGTCGACTGCGCTTGATGTTGTCTGCAGAATGAGCAAACGATAACGCGGGCTAAATTTGCATTACCTGCTAATGTCGGCTGGTGGTACTATCGTCGCCATTCGTATAAg > 2:55545‑M1/71‑251 (MQ=255) gTCTGAATGCGACGTTAAATACCGGCGAACACCAGGTGCAAATCAGTAATGGTGTTCCGTTAGGCACTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttg < 1:199057‑M1/251‑180 (MQ=255) gttctatggctccagatgacaaacatgatctcatatcagggacttgtacgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAATATGGGGAACCGGTGGTCGACTGCGCTTGATGTTGTCTGCAGAATGAGCAAACGATAACGCGGGCTAAATTTGCATTACCTGCTAATGTCGGCTGGTGGTACTATCGTCGCCATTCGTATAAGGAATTTTCTTa > 1:84840‑M1/59‑250 (MQ=255) aaTACCGGCGAACACCAGGTGCAAATCAGTAATGGTGTTCCGTTAGGCACTTTAGggaaggtgcgaataagcggggacattcttctcggctgactcagtcatttcctttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggt > 1:110426‑M1/1‑55 (MQ=255) tatcatatcagggacttgttcccaccttccTTAGGTAACGCTTATTTGCATCAACTGCGCCAGCGCTGCGCTGCCTGGCACTGCCAAATATGGGGAACCGGTGATCGACTGCGCTTGATGTTGTCTGCAGAATGAGCAAACGATAAAGCGGGCTAAATTTGCATTACCTGCTAATGTCGGTTTGTGGTACTATCGTCGCCATTCGTCTAAGTAATTGTCTTAATTATGCTAACTCGCCTCcttttctgaat < 2:205832‑M1/221‑6 (MQ=255) catatcagggacttgttcgcaccttccTTAGGTAACGCTTATGTGAATCAATTGAGCCAGCGATGCGATGCCTGGTAATGCCAAATAGGGGGAGCCGGTGGTCGACTGCGCTTGATGTTGTCTGCAGAAAGAGCAAACGAGAACGCGTGCTAAATTTGCATTACCTGCTAATGGCGGCTGGTGGTACTATCCTCGCCGTTCGTATAAGTTATTGTCTTAATTATGCTAACTCGCCTCCTTTTCAGAACTTa > 2:164429‑M1/28‑251 (MQ=255) atcagggacttgttcgcaccttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCGTGCAATGCCAAATATGGGGAACCGGTGGTCGACTGCGCTTGATGTTGTCTGCAGAATGAGCAAACGATAACGCGGGCTAAATTTGCAGGACCTGCTAATGTCGGCTGGTGGTACTATCGTCGCCAGTCGTATAAGTAATTGTCTTAAGTATGCTAACGCGCCTCcttttcagatcgtagcc > 2:162256‑M1/25‑243 (MQ=255) aTGGTGTTCCGTGAGGCACTTGAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatggttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtagcatttggtccgcccgaaacaggtttgccagcgtgaataacatcgccatttggtt < 2:110426‑M1/251‑228 (MQ=255) tCCGTTAGGCACTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatttttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgccagttggttatcgtt < 2:265358‑M1/250‑234 (MQ=255) ttccTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAATATGGGGAACCGGTGGTCGACTGCGCTTGATGTTGTCTGCAGAATGAGCAAACGATAACGCGGGCTAAATTTGCATTACCTGCTAATGTCGGCTGGTGGTACTATCGTCGCCATTCGTATAAGTAATTGTCTTAATTATGCTAACTCGCCTCCTTTTCAGAACTTAGCCCCTTCGGGGTGCTGATATAc < 1:189754‑M1/247‑1 (MQ=255) | TGTTTAACGGATTATTACAGGAACAGCTTGCACACCAAAATCAACGGTTGCCAGAGTTGGGCGCGTTATTGAAGCAGGTAAACCATTTACTTCGTCAGGCCAATCTGCCGGGGCAGTTTCCGCTATTAGTTGGCTATTATCATCGCGAACTGAAAAATCTCATTCTGGTTTCTGCGGGTCTGAATGCGACGTTAAATACCGGCGAACACCAGGTGCAAATCAGTAATGGTGTTCCGTTAGGCACTTTAGGTAACGCTTATTTGAATCAATTGAGCCAGCGATGCGATGCCTGGCAATGCCAAATATGGGGAACCGGTGGTCGACTGCGCTTGATGTTGTCTGCAGAATGAGCAAACGATAACGCGGGCTAAATTTGCATTACCTGCTAATGTCGGCTGGTGGTACTATCGTCGCCATTCGTATAAGTAATTGTCTTAATTATGCTAACTCGCCTCCTTTTCAGAACTTAGCCCCTTCGGGGTGCTGATATAC > NC_000913/1290906‑1291397 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |