| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,966,530 | 2 bp→TT | coding (114‑115/1260 nt) | rho → | transcription termination factor Rho |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,966,530 | 0 | C | T | 98.5% | 215.5 / ‑6.0 | 68 | I38I (ATC→ATT) | rho | transcription termination factor Rho |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (34/33); total (34/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
| * | NC_000913 | 3,966,531 | 0 | C | T | 98.5% | 211.0 / NA | 68 | L39L (CTG→TTG) | rho | transcription termination factor Rho |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (34/33); minor base G (0/1); total (34/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGCGTACTCTCCTGTGACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACG > NC_000913/3966287‑3966768 || tGCGTACTCTCCTGTGACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAagc > 1:18544/1‑251 (MQ=255) tACTCTCCTGTGACCAGTCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCATGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCACGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAagcagac > 2:357569/1‑249 (MQ=255) aCTCTCCTGTGACCAGGCAGCGAAAAGACATGATTCGATGACCGGAAACAGGAATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGTGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATTGGGCTGGAAAACCTGGCTCGTATTCGTAAGCAGGACATTA‑TTTTTGCCATCTTGAagcagccc < 2:465076/251‑3 (MQ=255) aCTCGCCTGTGACCAGGCAGCGAAAAGACATGAGTCGATGACCGGAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTGAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACTCCGTTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAATCTGTCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCAc < 1:413955/251‑1 (MQ=255) tgtgACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTAACCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCCGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCaa > 2:247007/1‑248 (MQ=255) agtgACCAGGCAGCGAAACGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGACAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCCTTTTGACGCAGCACGCaa > 2:13710/2‑248 (MQ=255) gACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGt < 1:430462/250‑1 (MQ=255) ggCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGa > 1:128460/1‑250 (MQ=255) aGACAGGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTg < 2:382521/251‑1 (MQ=255) cGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGt > 2:98505/1‑251 (MQ=255) cGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGt < 2:581171/251‑1 (MQ=255) tGACCGTAAACAGGCATGGATGATCCTGCCATACCATTAACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGGGATGGCGT‑ACt > 1:522818/1‑251 (MQ=255) cAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCACAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTg > 1:267654/1‑251 (MQ=255) cATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGCTATTGCAgg > 2:181809/1‑251 (MQ=255) ggATGATCCTGCAATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGACGG‑ACTGGAGATATTGCAgggtg > 2:406854/1‑248 (MQ=255) gatgatCCTGCCATACCATTCACACCATTAAGTTCGAGATTTACCCCACGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGCGTGGCGAAGATATCTTTGGTGCTGGCGT‑ACTGGAGATATTGCAggaggg > 2:136827/1‑248 (MQ=255) tgatCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGGTATTGCAggctggat > 2:352278/1‑251 (MQ=255) gatCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAggatggat < 1:171348/250‑1 (MQ=255) gatCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGAtt < 1:595562/251‑1 (MQ=255) atCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGGttt > 2:132111/1‑251 (MQ=255) cccTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCGTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGAGATCTTTGGTGATGGCGT‑ACGGGAGATATTGCAGGATGGATTTg < 2:373902/250‑1 (MQ=255) ccTGCCATACCATTCACAACATTAAGTTCGAGATT‑ACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGGTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCAAGCAAAGAGGGGCGAAGATATTTTTGGTGATGGGGT‑ACTGGGGATAtttgagggatggtttggt > 2:162502/1‑235 (MQ=255) cTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGGGGCGAAGATATCTTTGGTGATGGCGT‑AATGGAGATATTGCAGGATGGATTTGGt > 1:499388/1‑251 (MQ=255) cATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTtcc < 1:98505/251‑1 (MQ=255) aCCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑TCTGGAGATATTGCAGGATGGATTTGGTTtcctcc < 2:486584/251‑1 (MQ=255) aCCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTtcctc < 1:421252/250‑1 (MQ=255) aGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCTAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTc < 2:18544/251‑1 (MQ=255) cGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTa < 1:19776/250‑1 (MQ=255) gaTTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTc < 1:346556/251‑1 (MQ=255) aTTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCg > 1:368737/1‑251 (MQ=255) ccccAAGTTTAAGAACTCACACCACTATGAATCTTACCGACTTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑CCTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGt > 2:461472/1‑251 (MQ=255) cAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCt > 1:229849/1‑251 (MQ=255) gTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCtgat < 1:455706/251‑1 (MQ=255) gTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCtgat > 2:503250/1‑251 (MQ=255) aaGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGAc < 2:214023/250‑1 (MQ=255) aaGAACTCACACCACTATGAAGCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCTAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGTAGATATTGCAGGATGGTTTGGGTTTCCTCCGTTCC‑GGAGACAGCTCCTACCTCGCCGGTCCTGATGAc < 1:38434/250‑1 (MQ=255) aGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGAGGGATTTTGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGCTGACAt > 1:132792/1‑251 (MQ=255) cacaCCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGt > 1:337453/1‑251 (MQ=255) cacaCCACGATGAATCTGACCGAATTAAAGAATACGCCGGTGTCTGAACTGATCACTCTCGGCTAAAATATGTGGCTGGAAAACCTGTCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTGGAAGCAGCACTCAAAGAGTGGCGAAGATATCTGTGGTGATGGCTT‑ATGGGAGATATGGTAGGATGGAGTTGGATTCCTCCGTACT‑GCAAACATCTCCTGCCTCTGCGGTCCTGACGACTTCTAc < 2:620857/249‑1 (MQ=255) caccacTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGttt < 2:270834/251‑1 (MQ=255) cTATGCATCTTACCGAATTCAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGAAATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGt > 2:620606/1‑155 (MQ=255) cTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGAGCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACAGTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGt < 1:620606/155‑1 (MQ=255) gAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGcc > 1:537786/1‑251 (MQ=255) cTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAAt > 2:129354/1‑251 (MQ=255) aCCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATcc < 1:503250/250‑1 (MQ=255) aaTTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGt > 1:118584/1‑251 (MQ=255) tAAAGAATACGCCGGTTTATGGGCTGATCACTCTCGGCGAAAATATGGGGCCGGAAAACCTGGCTCGTATGCGTAAGCAGGAAATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGAGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCAGTTCC‑GCAGACAGCTCCTACCTCGCCGGCCCTGATGACATTCACGTTTCACCTAGCCAAACCAGCCGTTTc > 2:56632/1‑251 (MQ=255) aCGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGGATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGTTCCTGATGACATCTACTTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCg < 2:442706/251‑1 (MQ=255) gctggTTTCGGAGCTGATCACTCGCGGTGAAAAAATTGGGTTGGAAAACCTGGCTCGTATGCGTAAGCAGG‑CATTAATTTTTGCGATTGTGAGGCAGCAGGCAAAGAGTGGGAAAGATATCTTTGGTG‑TGGGTTGACTGGACATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACCCCTCCTACCCCCCCGTTCCTGATGCCAGCTACAGTTCCCCTATCCCAGTCCGCCGTTTCAACCTCCGCa < 2:406212/248‑1 (MQ=255) gCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑AATGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGAAAGCTCATACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGc > 2:497875/1‑250 (MQ=255) gAGCTGATAACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCCGCACGCACAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGACCTGATGACATCTACGTTTCCCCTAGCCCAATCCGCCGTTTCAACCTCCGCACTGGAGATAc > 1:582350/1‑251 (MQ=255) ggctgatacctctCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATAcc < 2:175873/242‑1 (MQ=255) gATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAtct < 1:129354/251‑1 (MQ=255) cctcccGGCGAAAATATGGGGCTGGAAAACCTGGCGCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTgg < 2:128460/246‑1 (MQ=255) cGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTc < 1:450925/251‑1 (MQ=255) agAAAATATGGGGCTGGAAAACCGGGCCCGTATGCGTAATCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑TCTGGAGATATTGCAGGATGGATTTGGTGTCCTCCGTTCC‑CCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCGACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAGCTCTGGTAAGATTc < 2:403617/250‑1 (MQ=255) gAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTcg > 1:323417/1‑251 (MQ=255) aaaaTATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCCCCGGTCCTGATGACCTCTCTGTTTCCCCTAGCCACATCCGCCGTTTCAACCTCCGCCCTGGTGCTACCATCTCTgagaaggttcgc > 2:107813/1‑240 (MQ=255) aaaaTATGGGGATGGAACACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGAAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGGTTCCTCCGTTAC‑GCAGACAGCTCCTACCTCGCCGGTCCAGATGACATATACGTTTCCCCTAACCAAATCCGCCGTTTCAACCTACGCACTGGTGTTACCATCTCTGGTAAGATTcgc > 1:207367/1‑251 (MQ=255) aaTATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGCCATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACTTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTcgccc < 2:348615/251‑1 (MQ=255) ggAAAACCTGGCTCGTATGCTTAAGCAGGAAATTA‑TTTTTTCATTTTTGAAGCAGCACGAAAAGATTGGAGAAGATATTTTTGTTGATGGCGT‑ACTGGAGATATGGCAGGAGGGTTTTGGTTCCCCCCTTTCC‑GCAGCCAGCTCCTCCCTCGCCGGTCCTGATGCCATCTACTTTTCCCTTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCAGCTCTGGTAAGATTCGCCCGCCGAaagaa < 1:57054/250‑1 (MQ=255) aaCCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTg > 1:519352/1‑250 (MQ=255) aaCCGGGCCCGTATGTGTAAGCAGGAAATTT‑TTTTTGCCTTTTGGAAGCAGCACGAAAAGAGGGGCGAAATTATTTTTGGTGATGGCTT‑CCGGGAGATATGGCGGGATGGATTTGTTTTCCTCCTTTCC‑CCAACCAGCTCCTCCCTCGCCGGTCCTGATGACATCTACGTTCCCCCTAGCAAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGa < 2:212891/251‑1 (MQ=255) gTATGCGTAAGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGGGGAGAAGATATCTTGGGTGATGGCGT‑ACTGGAGATATTGTAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATGCGCCCGCCGAAAGAAGGTGAACGCTAtttt < 1:162502/251‑1 (MQ=255) cGTAAGCAGGCCTTTT‑TTTTTGCCATTTTGAAGAAGCACGCAAAGAGTGGCAAAGATATCTTTGGTGATGGCTT‑CCTGGAGATATTGCATGTTGGTTTTGTTTCCCTCCTTCCC‑GCAGACACCTCCTCCCTCGCCGGTCCGGATGACATCTCCGTTTCCCCTAGCAAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCgct < 1:352278/251‑1 (MQ=255) aGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGctgctg > 2:564927/1‑251 (MQ=255) aGCAGGACATTA‑TTTTTGCCATTTTGAAGCAGCACGAAAAGAGTGGCGAAGATATTTTTGGGGAGGGCGT‑ACTGGAGATATTGCAGGATGGTTTTGGTTTCC‑CCGTTCCCGCAGACAGCTCCTACCCCGCCGGTCCTGATGACATCTACGTTCCCCCTAGCCAAATCCGCCGTTTCACCCCCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGctgctg < 1:279258/251‑1 (MQ=255) a‑ttTTTGCCATTTTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTaccg > 1:207487/1‑247 (MQ=255) || TGCGTACTCTCCTGTGACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACACCACTATGAATCTTACCGAATTAAAGAATACGCCGGTTTCTGAGCTGATCACTCTCGGCGAAAATATGGGGCTGGAAAACCTGGCTCGTATGCGTAAGCAGGACATTA‑TTTTTGCCATCCTGAAGCAGCACGCAAAGAGTGGCGAAGATATCTTTGGTGATGGCGT‑ACTGGAGATATTGCAGGATGGATTTGGTTTCCTCCGTTCC‑GCAGACAGCTCCTACCTCGCCGGTCCTGATGACATCTACGTTTCCCCTAGCCAAATCCGCCGTTTCAACCTCCGCACTGGTGATACCATCTCTGGTAAGATTCGCCCGCCGAAAGAAGGTGAACGCTATTTTGCGCTGCTGAAAGTTAACG > NC_000913/3966287‑3966768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |